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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0160400 |
| Transcript ID | LotjaGi2g1v0160400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT4G25360.1 TRICHOME BIREFRINGENCE-LIKE 18; Swiss-Prot: sp|Q8VYS5|TBL18_ARATH Protein trichome birefringence-like 18; TrEMBL-Plants: tr|I1NIC1|I1NIC1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56299458..56305210) extracted from Lotus japonicus Gifu genome v1.2.
TAGTCATTTATTTTCAAAGTCAACTTATTTCTTCCTCAAATTCTCTCAATTTTCCAAATTAATTCAAGAAAACTGTGACC TGAAGCTTGGGAATGCAAAGCGTGCACACAAGAATCTCATTCACTCACCATCTCTTTCAACGTGAACCTCTCACCCTTCC ACAACCATAGGACAAACCTGCATGATTTCATTGATGTTCCTTGTCACCCCTTTGCACTACAAATCACTGGTTCCAATTCC TGTCTTGATTCAGATTCTGGAATGAGAGCTTGCTAGTTCTCTCACAGGTTTCTGCCCCTTTTCCCCAATTGGTTTCTGCT ACTTCACTTTTCTGCTACTTCAATTTTGTGGGTAAAAAAATGTGTTTTTCCTGGTGGGGTTTGAGTTTTGAAGCTAAAGT TTGATCCTTTATGATTTCTTAGTTTGTTGTAACATGTTAATTGGCTGCAAGAGCAAGTTTTCAAGTGTGAGCCTTTTTGC TCCACTGTTGCATCTTTCAGCTCATTTTCACTTCATTCATTTAGTTTGGATTCATTTTTTCATTTTTTAATTATTTTTTT ATCTATTGTTGTAGATGATGGGGTGGTATTATTCATTGGTGGAAGTTGTGTTGTACTAAGCTGTGCCTGTGGGTATTTTC TATCTTTAGGAAAGTCTTCAACTCTTTATGATTCAGGGTTTAGTTTAAAGCTAGGTGGATTGAATGAGAGACATGACTTG GGGGGCTGCACTCAAAGGTTCCCCCAAAGTTTATTCCCATTCAAGACCTATCTCTTGGATTGTGGTTTCAGTAGGAGTAC TAGCAGTGTTCTTCTTGACTTTTGCTTGCTGGACTATGGTGTCATACCCTATTGGTTCAACCCTTCATGGATATTTCTAT GGTTCAGAGAGTTCAGAAAATTCTTATATATCAGTTTCTCTGATCAATGAAACTTCTACCGATCTTACCGCGAATGTAAG TTTAGATCTTGCAGCTAGTAAAGCATCCCCTGATCTGCAACCTTCCAAAGTTTCCAATGGTGTGTCAAATGATAGCGAGA TAGATCACACTCATACTGAATCAAGATCACAAGTACCCTACAGTGAAACTGCCTCACCAATTATTCCAGAATCCAAGGAG GTGGATGCCCTAGTAAATTCTGTTGTGGCGACTTCTAATTCGCAAGATCCTGTGACCTCATTTGGAAACAGCACAAATGT GATTAACAGTAGCTTGCCTGCTCACTCCGATTCACCAATTGATTTGGCTTCAGCTGCACCTACTCCAGTCGCTGGATCCA ATTCTTCCAGTGTGACGGATAATAATGGAATGGAGGATCCAAATATAGTAGCTTCTATGAATAAGTCCAACACTCTATTT ACAGCATCAAAAGGTATCTTTCTGTCTCCTTCAGATTCATTAACAGCAGCCATTCATGCATCATCTGACAAGTGAAATAA TGAATCATATGCTGTCTCTGTTAATTCAGGTTGCATTTGCTGTTATCTTGCAGGCTTTCAGAAACTTGTTTTCGACTTAT AATTTTACTGACCATTTGTAATTTATATGGGGACCTCATAGTCTTTTTAATGGAAAAAGCACTTTTATTTCGAATATATT CACTTCTGAAAACTTTTACTGTATTTTTTTCAACTTTAGAAAAAAATTAAAATTTTGAAGATAATCACATTTTTTTTAAT ATTTTGAGAAACTACAGTGAGCAGTTTTTGGAAAAAAGCAGAAATCATAACTGCCTTTTAAAATAAAGATTTTTTTAAAT AATTGTAACCAAATGAAAAATAACCTCTTTTACATAAAATCTCTAAAAAATAAGTCACTCTTTTACACAGTCATGAAAAA CAAACAGGCCCATGATCATTATGTAACATTATTTATTTTTGGTTTTCTTTATGTTATTCTCTTTTGAATGCAATTGAGCC AAAATGTCATGAGTTGTTTCATTTTATCAGTTTTACTTTGTTAAGCATTTTTTAATATGCTCAAGCTCAACATATGCCTT TGTATCTTGTTAGTTAAGAATTTCACATAGACAGTAGATTTATGAACTTCTATTTCAAATGATTTGCTTTGGAATTAGTG TATAACTGTATATCTTCTCAGTTTGTTGACTGGTGTTTTTCATTGTTATGTAGACTGTGATCTGTACCATGGAAATTGGA TCTATGATCCATTAGGACCATTATACACAAACAACTCATGCCCTGTGCTGACACAAACGCAGAACTGCTTGGGTAATGGG AGGCCTGATAAGGATTATGAGAACTGGCGATGGAAACCCCTTCAGTGTGACCTTCCACGATTTGATCCCAGCAAGTTTTT AGAGCTAATGAGAGGAAAGACATTGGCTTTCATTGGTGATTCAGTGGCTCGGAACCAGATGGAGTCAATGCTGTGTATTC TTTGGCAGGTTATTTTCATTATCCCTTACTGATCTGATTTGCAGGACAAATAGAATGATTTCAAGATGGAATAAAAAATT TAAATATCTTCCCATGATTCCTATGCTGTTTAAAATTGTGATTTTGAATTTTCTTAAAGCGGACATAGGCATACATGATA GTTGATACATACAACATAATCAAGTATTCCAATTATGATTGAGGTTATCCATATGGGTGCTAAGATACGTAAACGTTGAA ATCATAGATAGTTCACTTGACAAATGAAGGACACTGATGCTCAATCCCCAGGAAATTGCTTTCCACCTTGCAAGAGCTTG GTGTAATGACTTTTTGTAGAAATAAATGGGATAGCTGCCAATATTTCTTGAATGGATGTGAGGATGTAGTTTACAGTGTA TACTTATTACATATTATTGTCCTTTTTGGCATTGTCTACACAAATAAGTTAACTCTCTTGTTGTTAGGTATGCTTAAGTT ATGAAGAAACATTCTGGTTTCAGTTGTATGAAATCCTAGCTTAAATTTGAAACTTCTACGGAACTCATCTTAGTACTTAT TAGTTATTAACTGCTATACGGCTAAACCTCCAGGAAGGTTACTCCTTTAATGCATCTTGGAGCCTTGATTTAGTTATTAA TTGTTGATATCTTCAAGTGAGATCAAATATGTTGATTGCAGCATTGACCAAGTTGGAATGTCAAATTATCTTATAAAAAG GCATTTTTAGGCTCTAGGTCAGGATTGATCTTCATGTATATAATATATATGGACTGACACACACAAAATGAATGTATGTA TATGTGTGTGTGCGCCCACTTCCTTTTTTCAAGTGAGATGCTTATCTGCAAAATACGATCTTTCAGGTAGAAGAACCCAT GAATCAGGGAACTCGTAACATGCAGCGATATTATTTTAAGTCTGCATCTGTAACGGTTATACGGATATGGTCGTCATGGC TTGTCAAACACAATACTGAACCATTTAACTTTGCCTCATCTGGTGTGGAGAAGATCTATCTTGATGCCCCTGATGAGAGG TTGATGGAGTTGATCTCAACATTTGATGTGCTTGTTCTTTCTTCTGGCCATTGGTTTGCTAAGCAGTCTGTATATATTTT GAACAACGAGATTGTGGGAGGACAACTGTGGTGGCCGGACAAGTCTCGGCACATGAAGATCAACAATGTTGAAGCATTTG GTATTTCTGTGGAAACAGTTTTCACTGCTCTTGTTACACATCCAAATTATACAGGGCTCACAATTTTGCGCTCTTATTCC CCGGATCACTACGAGGGTGGGGCCTGGAACACAGGTGGATCATGCACTGGAAAAGTTAAGCCTCTTGCCCCCGGTGAGTT GGTGGAAAATAAGCATACCGATGCGATGCATGAGCAACAGGTAGCAGGTTTTAATCGAGCGATAAAAAAGACAACAAATA GATCAAAAATGAGACTGATGGATATTACTGAAGCCTTTCAGTACCGGGTTGATGGTCATCCTGGCCCATACAGGAGCCCT GACCCGAACAAGATTACAACACGCGGCCCAAATGGAAGGCCACCGCCACAGGATTGCTTGCATTGGTGCATGCCAGGCCC TGTAGATACCTGGAATCAAATTGTGTTTGAAATCATTAAGAGAGAATATGAAGGTGACAGGGCAGCATGAGATCTATTTT TTTTCCTTGACAGCCAAGCTACATTCACCTTCTGCACTCAGGAGGGTGACTTTTGCAGAAATGTGCCTGTCTGAAGAGGG GTAAAACTGGTCAGTTTTTTTCACATAGATGATTAGATGTATAGTATAGAGAAGTTTTGATTTTTTAGAAGATTAGCATG GTAAGCTGCTAGCTTATTCTGCAAGTTTCACGATTATCAGTACTCCTGAAGATGCTAAATCTGTTCATGAGTTAGAGCAG TTGTATTTTCAATATGAATCCATATCTCTTTTCATATATGACCTTACATTGTTCGGATTTGTTTCTCTAAATTGAGTTGC TGTTCTTGTTTTTTTAACTTAGTTGTAGTGATTGTTTGTTACAACATCATTGCTGGCTATAGAAAGCACGCAATTTAAGT TTATCAATCTCAAGGATAAAGTTAAAAAATAGATTCTAGTAGAAAGATACATTTAACAACTTGTATTCTCCTCCCCCATT TTTCTCGACATTAGCAATTGTAGTTTGTATCTTTTTTATCCCATTTATTTTTGCTTTCTTGAACTACTTAGATTATGTTT GAATATCTGTTGGAACCGTCACTATGCACTTCAAGATTAAAAAGTAAACGAAAATATACTTACTTATTTGAATATTATCT ACTACTGTTAAGTCTCTGGGTCAGAATTCTTGTGGCACTGTCTTACAGCTTCTTTTTTAAAATAACCATAGATTCTTTTT GCTGCTGACACTCAGTGAACATGCTTGCTTTAAATCTTTCTGTTATTATCCTTTATGATCCCTGTACTTTGCAATTGCAT CTCTTTGTTCAACTATATCTGTGGGGCAGTAGGGGGTATTGCATATTATCACATTATAGCATATAGATGTACCAAGCTGT CAAATACTGTACGAGCTTTACTTGTCTATTGTGTTTGTGAGCAGAAATGAAGATGGGAAGTTCGATTGGCTGTTTGGTAT AAGATGCATTTGGGATTTTGAAGCCAAAGTTTGGAAATTGGAGTGCCACCATTCTAGTAGAATGGGAATTCAAGATCTCC AAATTCATGGTATCTGATGTATATTTTGAGTAGTTTTCTACTGTCACGCCAAGGAGATGTTAGTTCATAAATACTGTAGT ATGTAGTCCGGGAATATGTCACTTGAACATGTAACCAAGAGGGATGCATAGTAAACGCCCCCCCAGGTTCACTCTTTTTA AACTCTTAGTAACATGAGGATTATGGTTATGTTTCACTTAGTATACTACATGGGGCATGTACTGAATTTTATGAGGAATG AAGGAAGTCTGTTTTTACTTTTTATTGCACTTGTTTTGTGTTTCCTCTTCATAGCATGACTAGCTTTGTGTAGATGATTG AAACCAAGTTTCATTGCTGGTGGATACCGGATACAGTACATATTGAGAGGAGAAATTGGGAGGTAGGTAGGTATCTGTAA TTTGGTTGAAGTGATGTTTTTTTTTAATATAAACTGATTAATTAAATGAAAGACGAAATAACTCCAATACAAGCGCTAAA AGTGACTATGGTTTAACTTATGCTACTGTATCCTATCCTATACTATATACTATTTCCGAAATAAAAAAGTGGCAACTCCA ACAAGTGTTATTCGCTCATTCTATGTCTTTCTTCATAAGCTTTCCCTCTCGTACTATAATTAGTAGGTAGATG
CDS sequence (LotjaGi2g1v0160400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGACATGACTTGGGGGGCTGCACTCAAAGGTTCCCCCAAAGTTTATTCCCATTCAAGACCTATCTCTTGGATTGT GGTTTCAGTAGGAGTACTAGCAGTGTTCTTCTTGACTTTTGCTTGCTGGACTATGGTGTCATACCCTATTGGTTCAACCC TTCATGGATATTTCTATGGTTCAGAGAGTTCAGAAAATTCTTATATATCAGTTTCTCTGATCAATGAAACTTCTACCGAT CTTACCGCGAATGTAAGTTTAGATCTTGCAGCTAGTAAAGCATCCCCTGATCTGCAACCTTCCAAAGTTTCCAATGGTGT GTCAAATGATAGCGAGATAGATCACACTCATACTGAATCAAGATCACAAGTACCCTACAGTGAAACTGCCTCACCAATTA TTCCAGAATCCAAGGAGGTGGATGCCCTAGTAAATTCTGTTGTGGCGACTTCTAATTCGCAAGATCCTGTGACCTCATTT GGAAACAGCACAAATGTGATTAACAGTAGCTTGCCTGCTCACTCCGATTCACCAATTGATTTGGCTTCAGCTGCACCTAC TCCAGTCGCTGGATCCAATTCTTCCAGTGTGACGGATAATAATGGAATGGAGGATCCAAATATAGTAGCTTCTATGAATA AGTCCAACACTCTATTTACAGCATCAAAAGACTGTGATCTGTACCATGGAAATTGGATCTATGATCCATTAGGACCATTA TACACAAACAACTCATGCCCTGTGCTGACACAAACGCAGAACTGCTTGGGTAATGGGAGGCCTGATAAGGATTATGAGAA CTGGCGATGGAAACCCCTTCAGTGTGACCTTCCACGATTTGATCCCAGCAAGTTTTTAGAGCTAATGAGAGGAAAGACAT TGGCTTTCATTGGTGATTCAGTGGCTCGGAACCAGATGGAGTCAATGCTGTGTATTCTTTGGCAGGTAGAAGAACCCATG AATCAGGGAACTCGTAACATGCAGCGATATTATTTTAAGTCTGCATCTGTAACGGTTATACGGATATGGTCGTCATGGCT TGTCAAACACAATACTGAACCATTTAACTTTGCCTCATCTGGTGTGGAGAAGATCTATCTTGATGCCCCTGATGAGAGGT TGATGGAGTTGATCTCAACATTTGATGTGCTTGTTCTTTCTTCTGGCCATTGGTTTGCTAAGCAGTCTGTATATATTTTG AACAACGAGATTGTGGGAGGACAACTGTGGTGGCCGGACAAGTCTCGGCACATGAAGATCAACAATGTTGAAGCATTTGG TATTTCTGTGGAAACAGTTTTCACTGCTCTTGTTACACATCCAAATTATACAGGGCTCACAATTTTGCGCTCTTATTCCC CGGATCACTACGAGGGTGGGGCCTGGAACACAGGTGGATCATGCACTGGAAAAGTTAAGCCTCTTGCCCCCGGTGAGTTG GTGGAAAATAAGCATACCGATGCGATGCATGAGCAACAGGTAGCAGGTTTTAATCGAGCGATAAAAAAGACAACAAATAG ATCAAAAATGAGACTGATGGATATTACTGAAGCCTTTCAGTACCGGGTTGATGGTCATCCTGGCCCATACAGGAGCCCTG ACCCGAACAAGATTACAACACGCGGCCCAAATGGAAGGCCACCGCCACAGGATTGCTTGCATTGGTGCATGCCAGGCCCT GTAGATACCTGGAATCAAATTGTGTTTGAAATCATTAAGAGAGAATATGAAGGTGACAGGGCAGCATGA
Protein sequence (LotjaGi2g1v0160400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDMTWGAALKGSPKVYSHSRPISWIVVSVGVLAVFFLTFACWTMVSYPIGSTLHGYFYGSESSENSYISVSLINETSTD LTANVSLDLAASKASPDLQPSKVSNGVSNDSEIDHTHTESRSQVPYSETASPIIPESKEVDALVNSVVATSNSQDPVTSF GNSTNVINSSLPAHSDSPIDLASAAPTPVAGSNSSSVTDNNGMEDPNIVASMNKSNTLFTASKDCDLYHGNWIYDPLGPL YTNNSCPVLTQTQNCLGNGRPDKDYENWRWKPLQCDLPRFDPSKFLELMRGKTLAFIGDSVARNQMESMLCILWQVEEPM NQGTRNMQRYYFKSASVTVIRIWSSWLVKHNTEPFNFASSGVEKIYLDAPDERLMELISTFDVLVLSSGHWFAKQSVYIL NNEIVGGQLWWPDKSRHMKINNVEAFGISVETVFTALVTHPNYTGLTILRSYSPDHYEGGAWNTGGSCTGKVKPLAPGEL VENKHTDAMHEQQVAGFNRAIKKTTNRSKMRLMDITEAFQYRVDGHPGPYRSPDPNKITTRGPNGRPPPQDCLHWCMPGP VDTWNQIVFEIIKREYEGDRAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 14 | 576 | 563 | 4.4E-223 | ||
| PANTHER | 14 | 576 | 563 | 4.4E-223 | – | |
| Phobius | 23 | 46 | 24 | - | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 47 | 582 | 536 | - | – | |
| MobiDBLite | 95 | 128 | 34 | - | – | |
| MobiDBLite | 97 | 111 | 15 | - | – | |
| MobiDBLite | 178 | 205 | 28 | - | – | |
| MobiDBLite | 187 | 205 | 19 | - | – | |
| Pfam | 224 | 276 | 53 | 7.1E-21 | ||
| Pfam | 277 | 570 | 294 | 4.2E-78 | ||
| MobiDBLite | 523 | 547 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0160400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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