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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0162500 |
| Transcript ID | LotjaGi2g1v0162500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cadmium-induced protein AS8, putative; TAIR: AT4G10330.1 glycine-rich protein; Swiss-Prot: sp|Q9NSB2|KRT84_HUMAN Keratin, type II cuticular Hb4; TrEMBL-Plants: tr|A0A151SIW7|A0A151SIW7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0162500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56831552..56834073) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAACGGTGAGGAGAAGGGTTTGCTGTGGAAGCTTCCGGAGTTGAAGTCCAGAGATCTCGGCAAGGTGGGTCCCGC CTTCGGTTTCGGTGCCGGCTGTGGCCTCGGCTTCGGTATTGGCCTTCTTGGAGGTACAGCACCCACTCAACTTCCACTTT TCCTTTTCTTCTCTCTTTTGATTTGTTGGTTGAGTAAAAAATGTGAATGCTTTAGAAGAATTATTAACTCATGGATGTTT GTTTTCAATTTCATTGTAAAGTTTGTTGAAATTATACCCTAAGCTTCACTTGCTTGAATATGGCATGGTTTCTTACTTAT TTGATAGTTTTTTCACATTGAGGTGTGAAAAAATCATAATATTTTTTTTGGAAAATTATGCTAATTTTGTATGAAAATGA TGAGGAAATGAAGAAAAGTCCTGGTATATAATGAACCCTTCTTCACTGTAGAAAGAAAATTAAAACTATTAGATTGTAAT TATAAACCTGTGTGTGTCACTGAAGTTCATATTTACTGATTGAAAGAAATAGAAATGTCAAAATCCATTAGGTTGTGGGT GGCCAGTGGCTTGTATTGTGTATGATGCAAGATTTTATCTTTTAGTTGTTGACTAGAATGTACAGAGAGGACTTCTTGGA GAGAGAGGTCTGAGTGATGAAGAGAGAACAAGGAAGAGTTACACTGGAATTGTAGTTTTGTTTCTGGGGGTCCTGGTATC AAGTTCTGAAAGAGAGTTATCACTTTTTAAAATTCATACCAGGACAAATAAATTGTTATGAGTTATGGATGAATGTAAGA AAGTATTCTCCCAATTGTTCAAGTTTCACAATATTATTGTTTGTTTTTCTATCTTTTAGGTTTTTATGCCCTTCTATTTG TGCTTAATGCTATTCCTTTTTTATTCATTTTATTTTGGGTCTCTAGGGCCTATAGATGATTGAATACCGAACTGTAAAGC AGTGCAGATAATTGGTAAACCACAGTTCGGAAAATCTTTCTTAAAGTCCTTTTTGCATAGTAATCAATGTTAAATCTTTC TGAGAAATTTTTTGCAGCATTTGTTTTGGTGCTTGATAATTGATATGAGGGGGGCAGGGATGTACTACACACTCTGAACT TATGGTCTAAATCAGCAGTTACAACCATGACAAGGAATTCTACAATTGAAAAGAAAAAATATTTTGTTGAAATCCTTATT CTACTCAATGCCTCATAACCAATGTTTTAAACTATTGACAAATGGTAGATCATTCCTTTATGTAATTGGTGAAGTTATAT CTAAAATAGTTTAACAGTAAGATGTAGTGTGCCTTTTCAGCTTCTTGTTTGATTTATGGCTGTAGGCCTGTTGCTCAAGA CCTTCTCTAATGCAGCTGCTATTAAGTTTGAGCATATTTTTTGTGTTGATTTATGCATAATAAAATCTTAAGCAAAATAC TTTTCTGACTCCAGGAGTAGGTATAGGCCCGGGAATTCCTGGCTTCCAAGTTGGTTTCGGGGTTGGTGCCGGCTGTGGTG TTGGTCTGGGATTTGGCTATGGTGTAGGAAAAGGAATTGCACAAGATGAGAACAGGAGGTACTCTAATGTTGGAAATCCT TTTCGTGGTTCTGGAAAGATTATTGCTGAGTAAGTAAATTGCGTAATTGTCCTTAGTTTTATGCCTTTCTTAATGTAAAT AATAAATATGCTCATTTGGTTGACTTTATGTTATTTCATTTCATTTTGTTATTCTGATAATTGTTCTGTCGACCTTTCTG TTCTCCATGCTGATACTTCTACTCTTATTGCTAAAATAGAGGAAAGTCCTGTATTTTAATTTTCTCAGTTGTTCCTATGT AAATCCAACAGAGAAATGTGAATGGAAACAAATAGATAAGTCACATTGGAAAGAGAAAAAAAAATACTGACAAGACTTTG GTGTATAATAAAATTATGCTTTTTGCATATTTGGAAACCTTCATGTCTAAGACGGTAAAGTCCACCTACATAGAGAGTGT GGCTAACACGAGACCCTTGAAGCAAGCTTTGGTGAATTTTTTAATAAGACTATCAGATTGAGGCTTTAAGCCACCACTTT TCAATAAGAATCTCGGTAATATGAAAATTGTGCAAAATTGCTTCTTAAAGAGTATGAATTCTTAATCTTGTAGCTTGTAC ATGATTGAACATTCTGCTTCCTTAAAAAATTCTTGTTGGGTAGATCCTATGAATCTGCAATAGCATTCCACCACGTATGC AAATAAATAAAAGGATAACAATCTGCAATGGTGTGGATATAACGGGCTCTATTCGTAAATCTTCAGATATACTATAGCTA CAAAGATTTTATTGTGTGAAAGTTTGTTATATCTAAAAATGTTCTGTGGCTGGTTTCTAATTTTATCTCATTTTTAATAT AATATGCATATTCTGTCTGTTATTTCAGGGATGATATTACTGCACTTGTGGATGAAATTGTCATTAATACTAAAAAGCTC ATCAAGGAGACATCAAAAGAAATTGAGAAATGGAGAAGATGA
CDS sequence (LotjaGi2g1v0162500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAACGGTGAGGAGAAGGGTTTGCTGTGGAAGCTTCCGGAGTTGAAGTCCAGAGATCTCGGCAAGGTGGGTCCCGC CTTCGGTTTCGGTGCCGGCTGTGGCCTCGGCTTCGGTATTGGCCTTCTTGGAGGAGTAGGTATAGGCCCGGGAATTCCTG GCTTCCAAGTTGGTTTCGGGGTTGGTGCCGGCTGTGGTGTTGGTCTGGGATTTGGCTATGGTGTAGGAAAAGGAATTGCA CAAGATGAGAACAGGAGGTACTCTAATGTTGGAAATCCTTTTCGTGGTTCTGGAAAGATTATTGCTGAGGATGATATTAC TGCACTTGTGGATGAAATTGTCATTAATACTAAAAAGCTCATCAAGGAGACATCAAAAGAAATTGAGAAATGGAGAAGAT GA
Protein sequence (LotjaGi2g1v0162500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNGEEKGLLWKLPELKSRDLGKVGPAFGFGAGCGLGFGIGLLGGVGIGPGIPGFQVGFGVGAGCGVGLGFGYGVGKGIA QDENRRYSNVGNPFRGSGKIIAEDDITALVDEIVINTKKLIKETSKEIEKWRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| ProSiteProfiles | 1 | 34 | 34 | 5.0 | – | |
| PANTHER | 3 | 133 | 131 | 2.1E-59 | – | |
| PANTHER | 3 | 133 | 131 | 2.1E-59 | – | |
| Phobius | 27 | 48 | 22 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 49 | 53 | 5 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 54 | 76 | 23 | - | – | |
| Phobius | 77 | 133 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0162500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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