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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0162600 |
| Transcript ID | LotjaGi2g1v0162600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein; TAIR: AT1G64810.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic; TrEMBL-Plants: tr|I1MQ97|I1MQ97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0162600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56879779..56883769) extracted from Lotus japonicus Gifu genome v1.2.
GTCACTCTAAATTGGTGAAAAATCCCAAAGTTAGAGTCTACTCAATACTCATGCTGGCTCCGTTCCATTGAATCTCATTC TCATTCTATCCGAACAAATGTTGAAGACATGAAGCTATAATTGCAGCAGAGAGAAACAAACACAGAATTAGCATTTGTGC TACTCTGAGTAGACTCTTAATCCCTCCTCACAAAAAACCTAAACCCTAAATTCCCTTTTCTCTGTCCTCGATCTTTCTCT CTGTCATTTGATTCTGATGTCACCGCTGTGAGTTACAGGAGCAAACAACATTAAAGTTCGTTTCTTTACCATCTTCCTCT TTCACAGGATACTCCAACAAACATGGGGCTGCCACTAGTTTCTTCTGCACTATTGGATTTCCCTCATAACCGTTAGTTAC TTCTTTTTCTCTCAATTTCATTCTGTATATTCTTTGGCCATGTTACTTGTTTTGATATTAATTTGTTATTTATTTGTTTG CAGGTGTTTTCCCCTGCATGGAGTTTATGGGGTCTCACCTATCTGCTTCTAAGTCATATGCTCCTGCTTTGAAGGTTTTA TATTATATGCTTTTATCCTGCATATTTTGTACTTAATATTGTAGATATTTCCTTCCAAAATCTTCTAGGTTCATTGAATT TCCTGAACTGAAATTGGATTTAACTCTTTTGAGGTGAGGGATTCTTTTTTTGCTTTAGAGGGTAAAGGGAAGTGTAATAG CAATTGGTTTTTAGTTGAGAATGTAACAGTATACATGCATGCTTATCTTTTTTTTTTTTTTATAGCAAATCACGGAGTTG TTTAAATCAAAACAATTAGGTTTTTTAATGAAATGTAGTGGCACCTCAATTTACCCTCTAAAGTGAATCCCCGCTCTGGA GAAATTAAAATAAATCCATTAAATTTTCGTCATACAAACCTAGTGGAAGCAATTACCAGCTGAAATAAAAGTTCAGCATA AAATTATAATTACTGATATTTGTCTACCAATGATGTTGATATTGGCTCACTTTCCTTATGTGTGTGATTGGATGAGGATT TCAATCTTAGTGTCTTATAGACTAGGGTAATCTCGAGAGTACATATTTGATTTCATTGTTCATCTCAGGTACTATAGACT GTTGAGATGTTACAAGAGCAGTGGCTGCACCTTGAATGGTTTTTATACACGACCCTTGTTTCCTGTTCCTACAGATTAGG ATGTCCTAGAAGTTTTTCCTGTTCCTAAATCCAATTTGTTATGTTTCCTCAAGCGGGCATCCAGAAACATCTATTTGAGA TGTACTAACTTTGACGCAACTTGAGTTGTAATACTCCTCTTATCTATGTGTAAAAGCTATTTTTCTTCTTACAATGCCTT CTAGTTATGCATTTATAATTAGTCCTCTGCTCATATTGATAATTGAATCCTTCTGGTAATTGAATTTGTTTTTAGTTCCA AATCTGAGTTGTAGCAAATCCTTCTGGCTGAACCTTCATCAAAATACGATTCATTTCTGATATAGTGATTCTAATGACTG ATTTTCCTTCCATGGCTGCCTGACTTAAGTATTGCCATGTAGATTTATATCATGGCAGCTACTGGTTTGTGACTTTGTAG TTGACATTGACAAGATTAGATTATTTATTGTTGGTGCATGAATTGAATGTATTGTATCATTATAAATATTGGTCGTTGAC ACCGGTTAGAGAGATTGAGATGTTCAATTAAACTTGGTACATAGGAATAGAGTCAGAGAGGGAAAAAAAAGAATCATAAG TTACTTATCAATTCTCAAAATTTATGGAATGTTATTTTCTTGAAGTGTTTTTGCTTTCTCAGTAGTGATTGTAAGCTTGC TTCTACTGATTAACTACAGAAATCATTGTGGAGGATTCAGGATTGTTAGCCTTTGTCTGAAACTGAAGAAAGTAATATAA GCCTTGCAAATATAATATTGTCCTTTGTTTTATCTTCTGAAGCAACCTTGTTGGAACTTACATTTTAGTTTTTGTTGCAG TTTAATTGTCAACATTTTCACAAGGTCGGATCAACATTGCCTGGAGTTATACTTTGTGCTAATCGGAAGTTCAGAGGTGA TGAAGCTGTGTGGAAACGAGAACAGTTAACCCAAAATGTTGATTTTCCACCAAAGTTCCCTAAGAAAAAGAAAAAACCAT ACCCAATACCCTTTAAGGAAATCAAACATGCTGCAAGGACTGACTGGAAACTTGCACACATGGGAATAGAGAAGCCTCTT GAACCTCCGAAGAATGGATTGCTTGTTCCAGACCTAGTTCCTGTTGCCTATGGAGTATTTGATGCTTGGAAGCTTTTGAT TAAAGGTCTTTCCCAGCTCTTGCATGTCATTCCTGCACATGGCTGTAGGTAGATTATATCGTGCTTATCTTCTAGTTTTT TTGTGAATGTTGCATTTGTTTTCTTTTGTTTTATTGCTGGCGTAGGAGTTAAGTTTTATCCAATTCAATTCCTGCAGTGA ATGCTCAGAAGTTCATGTGGCTCCAATTGGTCACTGCATTCTGGATTGTGAAGGTCCTACCAGTTCACAGCGTCATAGCT CTCATGCATGGGTCAAGGGTTCCATCAACGATATACTTGTCCCAATTGAGTCCTATCATCTCTTTGACCCCTTTGGTAGG CGCATTAAGCATCAAACACGGTTTGAGTATGACCGGATCCCAGCTGTTGTTGAGTTATGCATTCAAGCCGGGGTAGATAT CCCAGAGTACCCTTCACGCCGAAGGACCAATCCAGTACGAATTTTAGGGAGGAAAATACTTGACAGAGGCGGACATATAG AGGAACCTAAACCATGGCGCTCAGCGGAGTCCTCTTCACTCCTTGACTTCGATACTTACAGGGTTTGTGAGCGGTTTCCG CGTCCATCATTGGCAGACTTACCTAAAATTGCTGAAGAAACACTTTATGCATATGAAACTGTTCGAAAGGGTGTCAGGAA GTTGATGAAGAAGTACACCGTGAAAGCATGCGGTTATTGCTCGGAAGTTCACGTCGGACCATGGGGCCACAACGCTAAGC TTTGTGGAGCATTCAAGCACCAGTGGCGGGATGGGAAGCACGGTTGGCAGGACGCGACTGTGGATGAAGTTTTTCCTCCA AATTATGTGTGGCATGTTAGGGACCCGAGTGGACCTCCCTTGAGGAGTTCACTGAAGAGATATTATGGTAAGACTCCAGC TGTGGTAGAAGTGTGCATGCAAGCTGGTGCGAAGATCTCTGATGAGTACAAGCCCATGATGAGGCTTGACATTGTAATCC CGGATAGTGATGAGACAAGAATGATTATTTGATGAAATGTCACAAAATGCAGGATGTCTTCTACATGCATAATCTTTAAT ATGAGAAATGCACACAATGGCTGTCAGAAGGGGAGGCCTTGAATACAATCTTCAACTACAAGACATCTGTGAGTCCTTGA CTTGATGCTAGCTTGTCATGTATATAAGCAAATAGCAAAACAAGTAGGTTATATCACTAAATTTTGGTGTGTCAATTTGT CTGTATAATGATGTCATAAACTAGTGAAAAGTTCTGTGGGAAGATCAGTGCATGTGTCAATTGATTGTATGTTACAATTA CAAATACAATATAGTCAAATGGTTGCATAATCTTCTCCGCCTTGGTGCTTGTTTGGAACCGCGTCTGGAATGTTGTAAAC GACTAAACATGATCCAGTTGAAGCTTTAAGTTGTAGCTTCTATCTAAACATTCAGTGGAGTGTGTGTACGACTCATAAGT CCAGGTCGCTGCTTATGGCTCCCTTTTTGCCTTGTTGGGGTTAGAAATTTGGAAGGGGTTTTCTCCCTGCGAGGAAGATA GCAACCCTTCAATCATTAGCAGGATTTGTAAAGACATGTGGTACTCAAAGATCTTCTTGGTAGGGCTAAATAATTAATCC AACAGGAAGAGAGAATTTCCTAAGATATACAACTTCATGATGTAGCATGCTTTAAGTGGGTTGGTATTAGG
CDS sequence (LotjaGi2g1v0162600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTGCCACTAGTTTCTTCTGCACTATTGGATTTCCCTCATAACCGTGTTTTCCCCTGCATGGAGTTTATGGGGTC TCACCTATCTGCTTCTAAGTCATATGCTCCTGCTTTGAAGTTTAATTGTCAACATTTTCACAAGGTCGGATCAACATTGC CTGGAGTTATACTTTGTGCTAATCGGAAGTTCAGAGGTGATGAAGCTGTGTGGAAACGAGAACAGTTAACCCAAAATGTT GATTTTCCACCAAAGTTCCCTAAGAAAAAGAAAAAACCATACCCAATACCCTTTAAGGAAATCAAACATGCTGCAAGGAC TGACTGGAAACTTGCACACATGGGAATAGAGAAGCCTCTTGAACCTCCGAAGAATGGATTGCTTGTTCCAGACCTAGTTC CTGTTGCCTATGGAGTATTTGATGCTTGGAAGCTTTTGATTAAAGGTCTTTCCCAGCTCTTGCATGTCATTCCTGCACAT GGCTGTAGTGAATGCTCAGAAGTTCATGTGGCTCCAATTGGTCACTGCATTCTGGATTGTGAAGGTCCTACCAGTTCACA GCGTCATAGCTCTCATGCATGGGTCAAGGGTTCCATCAACGATATACTTGTCCCAATTGAGTCCTATCATCTCTTTGACC CCTTTGGTAGGCGCATTAAGCATCAAACACGGTTTGAGTATGACCGGATCCCAGCTGTTGTTGAGTTATGCATTCAAGCC GGGGTAGATATCCCAGAGTACCCTTCACGCCGAAGGACCAATCCAGTACGAATTTTAGGGAGGAAAATACTTGACAGAGG CGGACATATAGAGGAACCTAAACCATGGCGCTCAGCGGAGTCCTCTTCACTCCTTGACTTCGATACTTACAGGGTTTGTG AGCGGTTTCCGCGTCCATCATTGGCAGACTTACCTAAAATTGCTGAAGAAACACTTTATGCATATGAAACTGTTCGAAAG GGTGTCAGGAAGTTGATGAAGAAGTACACCGTGAAAGCATGCGGTTATTGCTCGGAAGTTCACGTCGGACCATGGGGCCA CAACGCTAAGCTTTGTGGAGCATTCAAGCACCAGTGGCGGGATGGGAAGCACGGTTGGCAGGACGCGACTGTGGATGAAG TTTTTCCTCCAAATTATGTGTGGCATGTTAGGGACCCGAGTGGACCTCCCTTGAGGAGTTCACTGAAGAGATATTATGGT AAGACTCCAGCTGTGGTAGAAGTGTGCATGCAAGCTGGTGCGAAGATCTCTGATGAGTACAAGCCCATGATGAGGCTTGA CATTGTAATCCCGGATAGTGATGAGACAAGAATGATTATTTGA
Protein sequence (LotjaGi2g1v0162600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLPLVSSALLDFPHNRVFPCMEFMGSHLSASKSYAPALKFNCQHFHKVGSTLPGVILCANRKFRGDEAVWKREQLTQNV DFPPKFPKKKKKPYPIPFKEIKHAARTDWKLAHMGIEKPLEPPKNGLLVPDLVPVAYGVFDAWKLLIKGLSQLLHVIPAH GCSECSEVHVAPIGHCILDCEGPTSSQRHSSHAWVKGSINDILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELCIQA GVDIPEYPSRRRTNPVRILGRKILDRGGHIEEPKPWRSAESSSLLDFDTYRVCERFPRPSLADLPKIAEETLYAYETVRK GVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPSGPPLRSSLKRYYG KTPAVVEVCMQAGAKISDEYKPMMRLDIVIPDSDETRMII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 439 | 424 | 1.5E-231 | – | |
| PANTHER | 16 | 439 | 424 | 1.5E-231 | – | |
| Pfam | 68 | 265 | 198 | 1.3E-97 | ||
| ProSiteProfiles | 161 | 246 | 86 | 28.163 | ||
| Pfam | 303 | 418 | 116 | 9.9E-25 | ||
| ProSiteProfiles | 333 | 418 | 86 | 28.911 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0162600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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