Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0165300 |
| Transcript ID | LotjaGi2g1v0165300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 6B; TAIR: AT3G05000.1 Transport protein particle (TRAPP) component; Swiss-Prot: sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B; TrEMBL-Plants: tr|I1JRI0|I1JRI0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0165300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57499046..57502978) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAGCAATGCTGTGAAACCGGACCGACCGGGAACCGGTCATGTCACAGGGTGAGTTGTCATGCGGATCAGAAATGCAA GAGATTAGAGAAAAGACGGTTTGATTTGAACGGTTTAATGAAAATCTGGTTACTCCAACCGATTTGGTTAAACAAGACCA AAATTTTGAACCGGTGCCTCAACCGGTTGAATAACCGGTTCAGTTTGGGATAGGCAAAACTAATCTCAAATATTGCAGTG ACTTTCTCCGAGTCCCTGTTGGGCATCACTCTATCACAACTAGCCGCTCACCTCAGCCCATTCCACCGCGTCGCACTCAC ACAGCCACCGTCTGATTCTCCACTCGCCGCCACAAGTGTCGCATCCCGCTCACCGGCACACTCTCTCAGCAGCCATCCCC TCCGCGTTCCGCCACCCCCGTCCGTCGCAGATCCGTATCCCACCGGCCACCGCATCGCCAATCAGAGCATCAGGTACCAT CGCATCACATCCCCCTCTTCTTCATCTTCTGAAGCTTCTTCCCAGTTCTGATTCTTCAATTTTCATTCCATAGCCTTCGC GCGAAAACGAGAGAGAGAGCGAGAATGGTGAGGGAAGTGTCAGAGAGTTGCGTGGATAGCTTGTTGACGGAGATGGTTTC GTGCTATTGCAATCGATTCTACGCCAACAAGCCTGAACTCGCTGCTCGCAGGATCGAGGCCATTGGATACCAGGTCGGTC ACCAGCTTTCTGAAAGGTTTGTTTCCAAACCCTAATCTCTTCTCTTCTTCTGCATTTCCGCACTTTCTTCATCGAGATCT GCACTGCAACACACACGATCATAGTAAATTACACATAGTTTGTGGAATTATACAAATATGCCCCAAAACCAAAAGTCTTG TGCTTTATTGATTGATAAACACTAAGCATCACTCTGTGATTCTCATTATTTTCTGGTATGCTGCTCAATTTGCACTGTTT CTATATTTAATTCTACATAATGGCTCTCTGTAGTGAAATGTCGTGAAATTTCGATGCATTGGTTAAAATGTGGTTAAAAG TAGTGGTATTTCGCTTTTGCTGTTTTAGGCTCCCACTTAATGTGGTGTGTTTTAACACTTATTTTCAGGTATACCATGGA GCGGCCTCGGTTCAGTGATCATCTAGAGGCTATCAAGTTCATCTGTAAGGATTTTTGGTCTGAGGTCTTTAAGAAGCAAG TAGACAACTTGAAGACAAATCATAGGGTGAGTTTAGAGTTGAACTTAATTGGTTGGATGGTATGTGTTTTTATATTGCTT TTTGTTTTTTGATTGGGATGATCATGTTGTTTGGTTCTTTTGTTGCAGGGTACCTTTGTATTACAAGATAATAAATTTCC CTGGCTTTCACGGATGTCAGTTGATCCATCTGCTGAGAATGTTAGTTCCGTTGAGGATAATACTTCACCTACACCTGAAA GCAAGGCAGCACAAGCAATGAGCATGCATCTTTATTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATT CCCTGTGCAGTTTCTGCTGATATATCAAACCTTCCAGCATGTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTTACACACACACATGTGCATGCACACATATATAAGACATGTCTTTTTATGGACAGATAAAGTTCATTGTCATTATGAAT GTTTTGTGGATGAACAAATGATCTTTCGAAGTTACATAATGATTATCTCACATTACATGTGAGAAGCATGATTTGAATAA TCTGCCCTGTTTAGAAAAGATTAATTGGGTTCTATTATAGTTGATAGCTATTGGCTTGCAGTGTCAAGTTTAAGAGTTCG AGAGCATCATTACTTTTCTTTTTAAAGTATCATTGTTAGATTTGATTATAGTTTTGTTGATCAAATTTGTGTTGGATGTA ATTGTGTTTGGATGTGTATTTGTGTTTTTAATCACGTTCAAACTTCAAACTTGTGCTTTTGCAAATAGACGAATCACCAT TGACTAAGTAGATACAAATAAAACCAACAAAGTGCAGTCTAGTGCGTAACATTCCACATTGTGGGGGTATGGGAGGATTG TGTTTAGCCTTACTCCCATGGGTGGAGACCGGAGAGGCTCACGATGTTTTTTCTGTCTGTGATTAGAAAACAGCAGCCTG ACCGATGCAACAAGGCTCACCTTTCAGCTACATATAAAACCTGGGTATCTTTTTTGTAATGCTTTAGTTTATTAGGTTCC TGATCAATGATAATCATGCACTAAGTTCTTCAAGTTGTGATCTCTGTAATCTGTATCTCGATTAAAATTATTATAAAGGC GCTGATCGTAAAGTGAAATACTTTGACTATAACATAACATCCCCTGGATAATTGATTCAATATAGGAAGTTTAATTTATT CATTTATTGAGAGTTTATGTCAATCTCTAGTTTTGTTAATCCATGTTGTAATTTTAGGACAATTCAAACCACATTATTTG TCCTCTCACTCATAGAGCATATACATTAACCAGCTGTGTTTCGTAGACCCTGAACAAGATTTCAATTTTGTGCTTGTGGC TTTTCTATCTTGGGGTAATAATACTGATTTAGCTTGATCAGAATTTTCAACATAATTTATATCTGGAATGCGTGTTGCTG TCATTGTCATTACTTGTTATAGCCAAGCGTACAACAAGTCAACAACTGAATGGTTCTCAGTAGGTTGGGTTGGCTATGTA GATCATGTGACACCGTCTTGCCTTGTCATATACTCATATATAAGTCTAAAGATGGGCCATGTAGATCATGTTACTTGTTA AGTCTAAAGATGGGCCTTATCTTAATTGTGGGACTTGGTAGTTTTTGTTGTTCTTCCTGTACCTCTTAACTTTTTTACTG TCTCCCACCTCCTTCATTTGGCCAACCCTCCTTAGTAGTGCTTCATTATAGTCTAGCATGTTCTTCTCTATTTAATTATG ACAAATTATTATCATTGCCTCATTCTAATTCCTTCATTTTGAGTTAACTATGCATCTTTATGTCTGATGTAAAGTAGTAA ACTAATGCGTAATTGGTGTATGTTTATGAAACTTTCCTTGTTTGCACGGTTTGCTCTGAACAGTCTTCTTTTTTACATCA TTGAGCAGGTTCATTTGTGGTGCGCATAAAAGCTTGATGAGTTCATTTGCATTACTGGCGGGAGGGAAGGCCTTCACATT GTTTGAAATAATGCTTTAATGTCTTCAAGCTCTTTTGTCATCAATTTACTGGACCGGGGAATATTTCCTTACTATATTTA AGCTATCAAATGTCTTGGTTGTATAGGAAGGGCTCCTGGGGAAGTGTTTTGATAAGTGAGGACTTGGTTCCTTCGGATAC AGATTCTAGGGAGATTAAGAGAGTATGGTGCGTAGTTCCCAAACTGTGGTGTAGGGTGGAAAGATTTTTGGGAATTTCAG TCCTTGTAATGTTATCACTCTTGTATTGAATGAATGCTAACTTTATATTTTAAAACTTTTGTTCCTTATTTGATTACCAA TTTGCTTGAGCAGGCTCCTTTATAAGACGAGCTTAAATTTATCCACTAGAAGTATTTGATTATGTCTTGACAAGAAAAAA AGAAGACATGATATTGGAGTATTAATATTTGATCTGGTTTATATTCTGCTTCATTCCATAGCAACCTTTTCTCCTTCCTC AAGGATTTTAGACTTTGTTGATTATGAAGCTTGTATGCATCAGAATTGGACCCATGAGTCGAGTCTTATAAGGTAAAAAA GGCATGGTAAAACTTTATTTCCAATCCCTTGAAGGGTTTGTTATTGGGCATCAATGTTTATGCCATTTGGATGTTGCTTT CATGGTTTCAGGGTTTGATAAAGGGCTTTGTGATCTAAGTAGGAAGGAGAAGAAGCAAAAGGCACGAGTGAATGAATCCA TTAATTTTTTTTT
CDS sequence (LotjaGi2g1v0165300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGGGAAGTGTCAGAGAGTTGCGTGGATAGCTTGTTGACGGAGATGGTTTCGTGCTATTGCAATCGATTCTACGC CAACAAGCCTGAACTCGCTGCTCGCAGGATCGAGGCCATTGGATACCAGGTCGGTCACCAGCTTTCTGAAAGGTATACCA TGGAGCGGCCTCGGTTCAGTGATCATCTAGAGGCTATCAAGTTCATCTGTAAGGATTTTTGGTCTGAGGTCTTTAAGAAG CAAGTAGACAACTTGAAGACAAATCATAGGGGTACCTTTGTATTACAAGATAATAAATTTCCCTGGCTTTCACGGATGTC AGTTGATCCATCTGCTGAGAATGTTAGTTCCGTTGAGGATAATACTTCACCTACACCTGAAAGCAAGGCAGCACAAGCAA TGAGCATGCATCTTTATTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCCTGTGCAGTTTCTGCT GATATATCAAACCTTCCAGCATGTTCATTTGTGGTGCGCATAAAAGCTTGA
Protein sequence (LotjaGi2g1v0165300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVREVSESCVDSLLTEMVSCYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSEVFKK QVDNLKTNHRGTFVLQDNKFPWLSRMSVDPSAENVSSVEDNTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSA DISNLPACSFVVRIKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 176 | 174 | 8.2E-60 | – | |
| SUPERFAMILY | 3 | 175 | 173 | 6.28E-43 | ||
| PANTHER | 4 | 175 | 172 | 1.9E-69 | – | |
| PANTHER | 4 | 175 | 172 | 1.9E-69 | ||
| CDD | 6 | 175 | 170 | 4.69924E-82 | ||
| Pfam | 11 | 174 | 164 | 7.4E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of GTPase activity | Any process that modulates the rate of GTP hydrolysis by a GTPase. | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of LotjaGi2g1v0165300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…