Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0166400
Transcript ID	LotjaGi2g1v0166400.1
Lotus japonicus genome version	Gifu v1.2
Description	4,5-dioxygenase-like protein; TAIR: AT4G15093.1 catalytic LigB subunit of aromatic ring-opening dioxygenase family; Swiss-Prot: sp\|Q70FG7\|DODA_BETVU 4,5-DOPA dioxygenase extradiol; TrEMBL-Plants: tr\|I3SFC8\|I3SFC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0166400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:57683822..57687586) extracted from Lotus japonicus Gifu genome v1.2.

GACTGCTTCAAATATAATTTTTGGCATGTGTGTGACAGCTTAAAAAATAATTAGTTTAGTTAAAAAAATCATTTTCTATT GATTTTCCTTTTCCTTTCCATTTTTCATCACTCGCGTGTCTCATCCGCCATTTTCTCTTCCATCATTCAGAATCTCTATA TATACCCCCACTGAAAATTCTAGCTGTTTTAGATTATTGTTGTGTTGTTTGTGTTACCAAAGGTGGTGGACCTGGTGGTT GTCTGGTTGAGGTAGAAGAAGATTAGTTTGGTTATGGCGTTAAAGGACACGTTTTACATATCCCATGGATCACCCACTTT GTCCATAGACGAGTCCCTTGTGGCTAGGAAGTTCCTCCAATCGTGGAAGAAGGAGGTGTTTCCGCCGAGACCCACTTCCA TTCTTGTCATCTCCGGCCATTGGGACACCGCTGTCCCCACCGTTAACGTTGTTGATTCCACCAACGACACCATCTATGAC TTCTATGGCTTCCCCAAACCCATGTACCAGGTTGGTTTACCATAAACCGCTGCCTCTAAATTTAGATTTAACTATATTCA TTCATCATATTGTTCTTTGTTTGAAGTTGGTAGAGAAAAACCATCATTGTCAAAAGGGTAGGTGAGAAGTTTCAATTATT TTCCTAGGAAGGATATTGTGTGATAGAAACTATGTCATAAGGGTAGGTGAGAAATTGCAAATATTTCTCGAGGAAGGATA TTTTGATAGAAGCTTCTTAGAAGAGCATTATCACTTAATACCCACGTTGACATTTTTTATATTAAAATTCATGTGAGACT GGTCACTAAATTAAAATGTAAGACTATTTTTAGTGGACCACCTAACCGCATTAGTAAAAATTGACTGTTTGAATTTTAGG TTGAGAGTTCAGTTTTTAGGAACCACAACCTTATGGAGATATTTGGCCATATCACATCCGGATCAAAATTGCGAAAAGCA ATTCAAATATTCAACACACCAAAATAATACTTTTTTTTGGTCTTGATAGAGTTTTATTAACGGTTAAACTAAAATTTTAA AAGAACTTCAATTAATTATTTAACTTAAAGGATATTGCTGGACGCAAGAAAGTCATGAATCAATTACATGGCTAGTTGTC CGGGAGGTCATCTCTCTTTCAATTGACTTTTTTTGAAGAAAAAGTAAACTACAAATAGCATTACTCAAAAACTCTACTTT ACTTTAGTATGAAGTAATTATACAGTTAGGTGAGGAGAAATTGTTAACTAACTAGGCTTAAGGCTTAAGTCATTGATAAT TATTAATTTAAAATAATATTTCTCAATAGAAATGTTTTTTTTTTTTTTAATTTTAGTTGTGGGCAAATTAGAATTTTGAT TTATGTGAGTGTAGCAAAACATAGCTGTTGGGAGAATTTTATTGATCCACCAACTCAACTTGAATAACCTAGGGTTAAAT AGTATCTCTTAATTGTAAAAAAATTTGACAATGTGAATTTTCACTTCTTAACCATTGATTTAATTTATTTATGTCTTTAA TTATTAAACACAAAAAAATCAGTGAGATCAAGTTTCTATTACAATTGAGAGGATCTTTTTCCACCAACAGTGATATCATG ATGTATATTAAATATATGCTTTCACTTTTAAATTCTCCCTGTACCATTCCTTCTCTGAGGATTTCCCCTGCAATTTTCTG TGAACCTTGAGCAGTGCTACAAAAGTTTTTAGGAACACTTGGTATGCACAGGATTTTCATGAGTAGTTTGAAAGCAAAGT TCTGTATCCAAACACAATTTTTAACTATCCCTGCAATTTTCACACACAATTCACTGCAAAAAGTGAACAAACTCTTCTTA TGGACGAAGTTGAAAACAAGTTCAATTTGTTGTTAGAGATTTTAGCTTGAAAGCAGAGTTTTGTATCTTTGTAGGAAAAT CCTATGCAAACTAATTGTCCAGGAAGAATGTTTGTGCCACCACTTCATACTTTATTTTCTATTAACAGTATGTCATATTA GGGGGCACAAAATATAAATGTGTTATTACCTTCTTTTTGTCCTCCAAAAATTGTAGTGCTATTGCACTTTATCCATAGCC CTTATAACTCATATTTTGCTTGTTCCTTGAGGATTTTCAAAATATTTTCCTGTTAACTGTTTGGCTGTGTTATACATGCA TAGATAGATTTGGAATGGCAAAAATTGAACTTTCAAGACATCACATGTGTAGTCCATCTCTGGTAAACTTGATATAATCC ACAAGTCCACATGTATGACCACAGTTAGGACCTGATATGCTGCAAATTAAAGAGCACGTATTGGAGTTTTTTAGTGGTTT TTAGTAGATAAACTCCAATAAGCTCAGATAAGTCTGTATCCAAACGACGCTTCTTACTCCGAACAATTGCATACCTATGT ATACAATTATGTTTTAAGTTTCAATTGGTATTCTAGATGAATACTTTACTTATCATTTGGCATGCCTTAGATTATCCATG TTTGATGCTCTTATATATATACATTCATCTAGAGCCATCTCTTACATGCTCCCTTTATACTAGCTTAAATATCCAGCACC TGGAGCTCCTCATTTGGCAAAGAGGGTGAAGGAGCTACTGAAAGAAGGTGGTTTCAGCCGCGTCGATGAAGATAAAAAAC GCGGCCTCGACCACGGTGCTTGGGTTCCACTCCTTTTGATGTATCCAGAAGCTGACATCCCAGTTTGTCAGCTATCTGTT CAATCTAACCTGGATGGGACTCATCATTATAACATAGGAAAGGCACTGGCCCCTCTTAAAGATGAAGGTGTACTTATAGT GGGTTCTGGAAGTGCAGTTCACAACTTGAGAGCACTCGAGCGCCACGCCACTGTTGCGGCGCCCTGGGCTGTAGAGTTTG ATAATTGGCTGAAAGAAGCTCTTCTTGAAGGAAGGTAATTGATGTTCAAATTTGCTTAATGCATGGTTAATCTCGTTAAG TCTGTTAACTGTGAGGATCTAAGTCGATCAGCTTCTCTTTTCTTATAATCAATTCTTGAAAACCAGAAGCTACTCACAGA AGCTTCTTCCCAGAATTGATTCTAGCTATATAGTATACAAAGAATTGTCGAAAGATTCCCAATAACATGCATTTACTGAG ATACCTTATGATATGACACTAGAAAACTAGCAATTGAATGCTGTAGAGATAGGCTTTTCATGGATTATATTGGTTGTGAA ATTTTCAATTGCTTTTGTAGATATGAAGATGTGAATCACTATGAACAAAAAGCACCACATGCAAAAAAGGCTCATCCTTG GCCGGATCACTTTTACCCACTGCATGTTGCTATTGGTGCTGCTGGTGAAAATTCAAAGGCCAAACTCATCCATAGCAGCA TTGACTTGGGAAGTCTCTCTTATGCCTCTTACCAGTTTACATCAGATGTCATCTAACTTAATGCATAATACCTGTTGTTC AGCTGCATGTACTCTAAGCACAGTTACTTAATATGCATCATCTATGATTTGAAGTGTTGATGGGAAATTTAGACTTATGT CCCTGTGTTGTACTGTGAAGAATTAATGCGCACAATAAAGAAACTGTTCTTATTTGAGGACTTTCCTTCTTCTTGAGATG TTGGATGGTCCATTCTTATTCTTAGAACCTGTTTGGATGAAAATCAAATACTAGTACTTATTGAAAGTTATTTATTGCTT AGATAAGCTCCAATAGATCTATTATTCAAACGGGTTATTATTGTTATTATTATTATTTCGTTTTAGCAATTGCTTAACAA TTTCA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0166400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTTAAAGGACACGTTTTACATATCCCATGGATCACCCACTTTGTCCATAGACGAGTCCCTTGTGGCTAGGAAGTT CCTCCAATCGTGGAAGAAGGAGGTGTTTCCGCCGAGACCCACTTCCATTCTTGTCATCTCCGGCCATTGGGACACCGCTG TCCCCACCGTTAACGTTGTTGATTCCACCAACGACACCATCTATGACTTCTATGGCTTCCCCAAACCCATGTACCAGCTT AAATATCCAGCACCTGGAGCTCCTCATTTGGCAAAGAGGGTGAAGGAGCTACTGAAAGAAGGTGGTTTCAGCCGCGTCGA TGAAGATAAAAAACGCGGCCTCGACCACGGTGCTTGGGTTCCACTCCTTTTGATGTATCCAGAAGCTGACATCCCAGTTT GTCAGCTATCTGTTCAATCTAACCTGGATGGGACTCATCATTATAACATAGGAAAGGCACTGGCCCCTCTTAAAGATGAA GGTGTACTTATAGTGGGTTCTGGAAGTGCAGTTCACAACTTGAGAGCACTCGAGCGCCACGCCACTGTTGCGGCGCCCTG GGCTGTAGAGTTTGATAATTGGCTGAAAGAAGCTCTTCTTGAAGGAAGATATGAAGATGTGAATCACTATGAACAAAAAG CACCACATGCAAAAAAGGCTCATCCTTGGCCGGATCACTTTTACCCACTGCATGTTGCTATTGGTGCTGCTGGTGAAAAT TCAAAGGCCAAACTCATCCATAGCAGCATTGACTTGGGAAGTCTCTCTTATGCCTCTTACCAGTTTACATCAGATGTCAT CTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0166400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVDSTNDTIYDFYGFPKPMYQL KYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWVPLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDE GVLIVGSGSAVHNLRALERHATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN SKAKLIHSSIDLGSLSYASYQFTSDVI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PIRSF	PIRSF006157 View details on PIRSF006157 Search for proteins/transripts with this domain View external data on PIRSF006157	1	264	264	3.5E-99	IPR014436 Show description in modal box View details on IPR014436 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.830.10 View details on G3DSA:3.40.830.10 Search for proteins/transripts with this domain View external data on G3DSA:3.40.830.10	2	263	262	7.5E-94	–
PANTHER	PTHR30096:SF13 View details on PTHR30096:SF13 Search for proteins/transripts with this domain View external data on PTHR30096:SF13	4	264	261	1.5E-148	–
PANTHER	PTHR30096 View details on PTHR30096 Search for proteins/transripts with this domain View external data on PTHR30096	4	264	261	1.5E-148	–
SUPERFAMILY	SSF53213 View details on SSF53213 Search for proteins/transripts with this domain View external data on SSF53213	6	262	257	2.75E-92	–
Pfam	PF02900 View details on PF02900 Search for proteins/transripts with this domain View external data on PF02900	6	262	257	6.4E-59	IPR004183 Show description in modal box View details on IPR004183 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd07363 View details on cd07363 Search for proteins/transripts with this domain View external data on cd07363	6	262	257	7.02143E-128	IPR014436 Show description in modal box View details on IPR014436 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006725 View details of GO:0006725 AmiGO InterPro QuickGO	Biological process	Cellular aromatic compound metabolic process	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.	Subterm of View details of GO:0044237
GO:0008198 View details of GO:0008198 AmiGO InterPro QuickGO	Molecular function	Ferrous iron binding	Interacting selectively and non-covalently with ferrous iron, Fe(II).	Subterm of View details of GO:0005506
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914
GO:0016491 View details of GO:0016491 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.	Subterm of View details of GO:0003824
GO:0016701 View details of GO:0016701 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor.	Subterm of View details of GO:0016491
GO:0055114 View details of GO:0055114 AmiGO InterPro QuickGO	Biological process	Oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.	Subterm of View details of GO:0008152

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0166400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi2g1v0166400.1