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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167000 |
| Transcript ID | LotjaGi2g1v0167000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9VI01|A0A0L9VI01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57728230..57731349) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTCACTTCTTCCCTCTATTGACTGACGAGGTTAGGGTTTCACGACATTGTGCGACACGGTACGATGTTTCTCTTCCT TGTTCCTTTCTCAGAATTTCTTGCCATTTCCATGTATAACAATTTTGATTATTCGCTTTTCACACTGTGGCTCATTTTTT TAATAGTGTATTATTAATTTTCTATTTATTATTTTTTTTGGGATTCTGGGGTGTTAAATTTCTGCGTATTGTATGTTATG CTGTGTTTGGCATTGAGAATTTTAAACCTGAGTAGCATGAAATTGATTTGCAGTGGCAATGGCTTATGTGGATGATGATG ATGCTTCTACGGACTCTGGAGATGATGTGAACATGTTGTTGGATGGACACAAGCGTCAGGCGGGTGTGCCGTCGGGTTCT AATGGTGGCCGGAAGCGAGGAAGGAAAGCTACTGGCAGTGCTATAGTGGATGCTATGATGGAGATTGCGGCTGCTTCGAA GATGAGGGCTAGCGCGATTGTGAAGAATGAGGACAGATTCTCCATAAACAAGTGCATCAAAGTGTTGGATGAGATGCAAG GTGTTGATGAACAGATTTACTTTCTTGCTTTGGATTTGTTTGAGGATCACCCCAATGCCCGTGAGGTTTTCATCTCTATT AAGGGTGAAAAAAGATTGCCATGGTTGCAGGGCAAATGTGGTGTTTCCTCTAGTTGAATTGTTTGAGAAAACTGTCCTGT TTTTTGTGAAAGTGGATCCTTACTTTTGTACAGTTATGTAGACTGTAAGATGCAAGGGAACATATAAGTCACTATTATTA ATTTGATCTTGTGCTTAATGCTGATGTTACTCCGAGTTCATCCTTTTCGAGTTGAGTGCAAACACAGTACTTTGTTTTCG AACTAATTTTTTACTTGTTTTATGCATGATTGGAATGCTTTCTTGATCTATTGACTAGATATATTAGAAATATGTATTCT CTTGCACTTTTCGTATCTTTGAAGTTTATCTTTACAGATACACCAATCAGCTTGGATGACATTGACTTAGAATTGGATGA GATGGAACTAGTTGCCGCTGCTGCTGGATACTATTACTATAGCTGTCTAACTAAACAGCCTTCCCGCAGGAAATGTGAAT TTATGGCAGAAGTGCTGAATGGGCATGATGACTTTTTTCGGGAAATGTTGCGTATGGACAAGCATGTATTTCACAAGTTG TGTGACATTCTCCGTCAAAGAACCCTGTTACGTGATACTCCTGGGGTAATGATAGAGGAGCAGTTAGCAATATTTTTAAA CATCATTGGCCATAACGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCCGGTGAAACCATTAGCCGACATTTTA ATAATGTACTGAAGGCTGTTAAATCACTGTCACGTGAAGTTTTACAACCTCCTCAGCCCACAACACCTCCAGAAATTCTC AACAGCGCTAGATATTACCCATATTTCAAGGTTCCAACTTTGAGCTCTTTCTCCCTTGCCATTTTCTATTCCGTTGAAAT GTCTCCTGTGTTTTACTACTTGTGTGTGCTAGTTTATTGACAGTTCCTCTCCCCCCTCTATACTTTCAGGATTGTATAGG AGTAATTGATGGTATGCAAATTCCTGCACATGTTCCCGCCAAAGATCACTCTCGATTTCGCAATAAGAAAGGTATCCTAG CTCAAAATGTGCTGGCAGCTTGCACATTTGACCTGCAGTTTATATTTGTTTATCCTGGTTGGGAAGGCTCAGTCAGTGAA TCACGTGTGTTAAGGGCAGTCCTTGATGACCCAGATCAGAATTTCCCCCAAATACCTCAAGGTTTGTTACTTGGTAGTAG TATATCTGTAGTTTTGGGTTTACTATCTGCCCATGTTGCACATTACATTAGTGATAACTGATAACTTATTCCCTTTGGAT TTATTTTATAGGAAAGTATTACCTTGTTGACATGGGATACTTCAATACCGAAGGTTTTATTACTCCTTTTCAAGGTGTTC GGTACCAGCGTCATGAGTATAGAGGTGCTAATCAATTCCCCAGAAATGCAAAGGAGCTGTTTAATCACAGGCATTATTTT CTGAGGGGTGCTATCCTGAGGTCATTTACTGTGTTGAAAGCTAGATTCCCCATCCTTATACCTGCTCCTCAATATTCCTT TCAGATTCAGCGCGACATAGTCATAGCTGCATGTGTTTTGCATAATATTATTCGCCGTGAAGATAGAAATGACTGGTTAT TCAATAGCCTTGGGGGGACACCAGTGGACGAACTTACAGTTCTTGATGAACTTCCTGATGTTCAGTTGCTTTCTTCAATG CAAGAACAACTTGCATTCTCGTTACGGGATTCAATTGCTTCAGCTATGTGGGATGACTTCTTAAATAAATGGGATGAGTG GTGATTATTTGCTTGAAATATTTCATGATACTTTTGTGACTCAATATGGGGGCGGCCTTTTGCAAATGGGCGTGTAGGCT CTGATGGAACTGATGGCCACCTTAATTTGATGTATAGGTCACTGTCCATTATTATTGTTAGTAACATGAAATTTTGTGTA GTCTCTGCTTATATTTGTCAAATATTTACATTGAAATGGAATTGTGAATGCTGCTTTGAGTTAGATAAAGATATTGCTGT GACTGTACATTTTACAGAAGCCTAATTGTTGCTAGTTTTAGTACTTCAATATTATCTTCATCATTCAGTTAGAGGAGGTT TGATTCAACATGAAACTACAGTTTATACTTTATAGTGAACCCATAAATTTAATTCTCCCAAACGTTACAGGGGTCATCAA ATTAGTAGTAGCTTATCAAAAAAAAATTCAAATTAGTAGTAAAAAAATAATTGATCTTTAAATTTCCATTTTGAGAATTT AAAGCGCCAACACATTCTTAATTGCTATTCACCCCTGCCTGCTGATTTAATTTGAGTGTTTCTATGGTGATCCAACATGA TAGGCAGAATGACCTTGAACTAGTGGAAGAGTCCCAAATTGTGATCAATGCAGAAGAAAGTAAGCACTCCTTTGACAGAG GAAGAGGTAGTTCCAATACCAAGGTGCAAGCTTAATGCAGCAAAGCTGGGGATACAATTGATGTGTGCTATAGGAACACG
CDS sequence (LotjaGi2g1v0167000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATGTGGATGATGATGATGCTTCTACGGACTCTGGAGATGATGTGAACATGTTGTTGGATGGACACAAGCGTCA GGCGGGTGTGCCGTCGGGTTCTAATGGTGGCCGGAAGCGAGGAAGGAAAGCTACTGGCAGTGCTATAGTGGATGCTATGA TGGAGATTGCGGCTGCTTCGAAGATGAGGGCTAGCGCGATTGTGAAGAATGAGGACAGATTCTCCATAAACAAGTGCATC AAAGTGTTGGATGAGATGCAAGATACACCAATCAGCTTGGATGACATTGACTTAGAATTGGATGAGATGGAACTAGTTGC CGCTGCTGCTGGATACTATTACTATAGCTGTCTAACTAAACAGCCTTCCCGCAGGAAATGTGAATTTATGGCAGAAGTGC TGAATGGGCATGATGACTTTTTTCGGGAAATGTTGCGTATGGACAAGCATGTATTTCACAAGTTGTGTGACATTCTCCGT CAAAGAACCCTGTTACGTGATACTCCTGGGGTAATGATAGAGGAGCAGTTAGCAATATTTTTAAACATCATTGGCCATAA CGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCCGGTGAAACCATTAGCCGACATTTTAATAATGTACTGAAGG CTGTTAAATCACTGTCACGTGAAGTTTTACAACCTCCTCAGCCCACAACACCTCCAGAAATTCTCAACAGCGCTAGATAT TACCCATATTTCAAGGATTGTATAGGAGTAATTGATGGTATGCAAATTCCTGCACATGTTCCCGCCAAAGATCACTCTCG ATTTCGCAATAAGAAAGGTATCCTAGCTCAAAATGTGCTGGCAGCTTGCACATTTGACCTGCAGTTTATATTTGTTTATC CTGGTTGGGAAGGCTCAGTCAGTGAATCACGTGTGTTAAGGGCAGTCCTTGATGACCCAGATCAGAATTTCCCCCAAATA CCTCAAGGAAAGTATTACCTTGTTGACATGGGATACTTCAATACCGAAGGTTTTATTACTCCTTTTCAAGGTGTTCGGTA CCAGCGTCATGAGTATAGAGGTGCTAATCAATTCCCCAGAAATGCAAAGGAGCTGTTTAATCACAGGCATTATTTTCTGA GGGGTGCTATCCTGAGGTCATTTACTGTGTTGAAAGCTAGATTCCCCATCCTTATACCTGCTCCTCAATATTCCTTTCAG ATTCAGCGCGACATAGTCATAGCTGCATGTGTTTTGCATAATATTATTCGCCGTGAAGATAGAAATGACTGGTTATTCAA TAGCCTTGGGGGGACACCAGTGGACGAACTTACAGTTCTTGATGAACTTCCTGATGTTCAGTTGCTTTCTTCAATGCAAG AACAACTTGCATTCTCGTTACGGGATTCAATTGCTTCAGCTATGTGGGATGACTTCTTAAATAAATGGGATGAGTGGTGA
Protein sequence (LotjaGi2g1v0167000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYVDDDDASTDSGDDVNMLLDGHKRQAGVPSGSNGGRKRGRKATGSAIVDAMMEIAAASKMRASAIVKNEDRFSINKCI KVLDEMQDTPISLDDIDLELDEMELVAAAAGYYYYSCLTKQPSRRKCEFMAEVLNGHDDFFREMLRMDKHVFHKLCDILR QRTLLRDTPGVMIEEQLAIFLNIIGHNERNRVIQERFQHSGETISRHFNNVLKAVKSLSREVLQPPQPTTPPEILNSARY YPYFKDCIGVIDGMQIPAHVPAKDHSRFRNKKGILAQNVLAACTFDLQFIFVYPGWEGSVSESRVLRAVLDDPDQNFPQI PQGKYYLVDMGYFNTEGFITPFQGVRYQRHEYRGANQFPRNAKELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQ IQRDIVIAACVLHNIIRREDRNDWLFNSLGGTPVDELTVLDELPDVQLLSSMQEQLAFSLRDSIASAMWDDFLNKWDEW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 129 | 439 | 311 | 1.2E-101 | – | |
| PANTHER | 129 | 439 | 311 | 1.2E-101 | – | |
| Pfam | 251 | 414 | 164 | 1.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0167000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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