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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027806
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 55 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.673s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0230969.1
n.a. Uncharacterized protein TCM_037603 [Theobroma cacao] gi|508783120|gb|EOY30376.1| chr0 119723764 119724219 -
2 domain predictions
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Lj0g3v0254679.1
n.a. Uncharacterized protein TCM_037329 [Theobroma cacao] gi|508782705|gb|EOY29961.1| chr0 132226463 132232946 -
2 domain predictions
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Lj1g3v2372260.1
n.a. Uncharacterized protein TCM_037329 [Theobroma cacao] gi|508782705|gb|EOY29961.1| chr1 27748016 27750473 +
2 domain predictions
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Lj1g3v3834070.1
n.a. PIF-like transposase [Daucus carota] gi|82570160|gb|ABB83644.1| chr1 43547648 43549605 +
2 domain predictions
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Lj1g3v3975890.1
n.a. Trp repressor/replication initiator [Medicago truncatula] gi|124359622|gb|ABN06006.1| chr1 47071107 47071734 +
2 domain predictions
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Lj1g3v4446900.1
n.a. Uncharacterized protein TCM_004298 [Theobroma cacao] gi|508702785|gb|EOX94681.1| chr1 51959394 51961965 -
2 domain predictions
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Lj2g3v0533480.1
n.a. CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 2 [Theobroma cacao] gi|508700881|gb|EOX92777.1| chr2 7137402 7139988 -
2 domain predictions
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Lj3g3v1907630.1
n.a. OSJNBa0079C19.15 [Oryza sativa Japonica Group] gi|57834109|emb|CAE04774.3| chr3 24543780 24547191 +
2 domain predictions
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Lj3g3v3165180.1
n.a. Trp repressor/replication initiator [Medicago truncatula] gi|124359622|gb|ABN06006.1| chr3 39165793 39168067 +
2 domain predictions
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Lj4g3v0575050.1
n.a. PIF / Ping-Pong transposase [Arabidopsis thaliana] gi|18402129|ref|NP_566626.1| chr4 9074419 9076487 -
2 domain predictions
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Lj4g3v0619970.1
n.a. PIF / Ping-Pong family of plant transposases [Theobroma cacao] gi|508706394|gb|EOX98290.1| chr4 9382586 9384527 +
2 domain predictions
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Lj4g3v1957760.1
n.a. Os04g0644200 [Oryza sativa Japonica Group] gi|297603451|ref|NP_001054056.2| chr4 27281897 27284357 +
2 domain predictions
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Lj4g3v2172960.1
n.a. Uncharacterized protein TCM_037603 [Theobroma cacao] gi|508783120|gb|EOY30376.1| chr4 29995490 29997235 +
2 domain predictions
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Lj5g3v2264220.1
n.a. PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana] gi|15233248|ref|NP_191095.1| chr5 33098286 33101242 -
2 domain predictions
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Lj6g3v1211840.1
n.a. Uncharacterized protein TCM_042422 [Theobroma cacao] gi|508725756|gb|EOY17653.1| chr6 15074050 15075002 -
2 domain predictions
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LotjaGi1g1v0057500_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061FY73|A0A061FY73_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0057500_LC LjG1.1_chr1 8050649 8052306 -
2 domain predictions
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LotjaGi1g1v0236100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0236100_LC LjG1.1_chr1 56067432 56068509 +
2 domain predictions
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LotjaGi1g1v0313100.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
2 domain predictions
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LotjaGi1g1v0313100.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
2 domain predictions
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LotjaGi1g1v0377500_LC.2
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0377500_LC LjG1.1_chr1 85720455 85720968 +
2 domain predictions
 –
LotjaGi1g1v0443500_LC.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|F8WL75|F8WL75_CITUN Putative uncharacterized protein ORF08; Found in the gene: LotjaGi1g1v0443500_LC LjG1.1_chr1 94069538 94072347 +
2 domain predictions
 –
LotjaGi1g1v0443500_LC.2
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|F8WL75|F8WL75_CITUN Putative uncharacterized protein ORF08; Found in the gene: LotjaGi1g1v0443500_LC LjG1.1_chr1 94069538 94074661 +
2 domain predictions
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LotjaGi1g1v0704500_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0704500_LC LjG1.1_chr1 127269907 127271078 -
2 domain predictions
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LotjaGi1g1v0704600_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0704600_LC LjG1.1_chr1 127274177 127275384 +
2 domain predictions
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LotjaGi1g1v0716300.1
n.a. nuclease; TAIR: AT3G63270.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A151RU46|A0A151RU46_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0716300 LjG1.1_chr1 128468670 128479491 +
2 domain predictions
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LotjaGi2g1v0102100_LC.1
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|P23393|T112_STRAL Putative transposase for insertion sequence element IS112; TrEMBL-Plants: tr|A0A0B2SJL0|A0A0B2SJL0_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0102100_LC LjG1.1_chr2 34035853 34036641 +
2 domain predictions
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LotjaGi2g1v0128700_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0128700_LC LjG1.1_chr2 47074396 47075479 +
2 domain predictions
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LotjaGi2g1v0165700_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
2 domain predictions
 –
LotjaGi2g1v0165700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
2 domain predictions
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LotjaGi2g1v0165700_LC.3
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57582141 -
2 domain predictions
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LotjaGi2g1v0167000.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9VI01|A0A0L9VI01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167000 LjG1.1_chr2 57728230 57731349 -
2 domain predictions
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LotjaGi2g1v0167000.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9VI01|A0A0L9VI01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167000 LjG1.1_chr2 57728946 57731051 -
2 domain predictions
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LotjaGi2g1v0195900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A0B2SA54|A0A0B2SA54_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0195900_LC LjG1.1_chr2 63002585 63007188 -
2 domain predictions
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LotjaGi2g1v0279400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0279400_LC LjG1.1_chr2 75092369 75092880 +
2 domain predictions
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LotjaGi2g1v0369500.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2RMS4|A0A0B2RMS4_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0369500 LjG1.1_chr2 86681453 86683824 +
2 domain predictions
 –
LotjaGi3g1v0236500_LC.1
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi3g1v0236500_LC LjG1.1_chr3 37914209 37921260 -
2 domain predictions
 –
LotjaGi3g1v0236500_LC.2
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi3g1v0236500_LC LjG1.1_chr3 37918737 37919325 -
2 domain predictions
 –
LotjaGi3g1v0317400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|A0PNM3|RSKA_MYCUA Anti-sigma-K factor RskA; TrEMBL-Plants: tr|A0A151TVN1|A0A151TVN1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0317400_LC LjG1.1_chr3 67161762 67162983 -
2 domain predictions
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LotjaGi3g1v0427200_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi3g1v0427200_LC LjG1.1_chr3 83831768 83832377 -
2 domain predictions
 –
LotjaGi4g1v0050400.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi4g1v0050400 LjG1.1_chr4 6103517 6106875 +
2 domain predictions
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LotjaGi4g1v0071300.1
n.a. PIF / Ping-Pong family of plant transposase; TAIR: AT3G19120.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9U2I0|A0A0L9U2I0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0071300 LjG1.1_chr4 9052672 9053993 -
2 domain predictions
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LotjaGi4g1v0075400.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0L9VBN6|A0A0L9VBN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075400 LjG1.1_chr4 9662686 9664465 +
2 domain predictions
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LotjaGi4g1v0111100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|E9Q414|APOB_MOUSE Apolipoprotein B-100; TrEMBL-Plants: tr|A0A151TVF9|A0A151TVF9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0111100_LC LjG1.1_chr4 15866980 15867767 -
2 domain predictions
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LotjaGi4g1v0280700.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT1G72275.1 LOW protein: nuclease-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A1J7HDU9|A0A1J7HDU9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0280700 LjG1.1_chr4 65175853 65180053 +
2 domain predictions
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LotjaGi4g1v0311700.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9UYE2|A0A0L9UYE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0311700 LjG1.1_chr4 68805405 68807209 +
2 domain predictions
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LotjaGi5g1v0038400_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2QNQ5|A0A0B2QNQ5_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi5g1v0038400_LC LjG1.1_chr5 6409723 6413419 +
2 domain predictions
 –
LotjaGi5g1v0048100.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9V0U2|A0A0L9V0U2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0048100 LjG1.1_chr5 8070613 8072259 -
2 domain predictions
 –
LotjaGi5g1v0048100.2
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9V0U2|A0A0L9V0U2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0048100 LjG1.1_chr5 8070613 8072259 -
2 domain predictions
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LotjaGi5g1v0182700_LC.1
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi5g1v0182700_LC LjG1.1_chr5 46531929 46534130 +
2 domain predictions
 –
LotjaGi5g1v0356400.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I3RZV8|I3RZV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0356400 LjG1.1_chr5 67133244 67137625 -
2 domain predictions
 –