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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22930
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 87 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069209.1
n.a. CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 3 [Theobroma cacao] gi|508700882|gb|EOX92778.1| chr0 24917364 24919595 +
1 domain prediction
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Lj0g3v0203829.1
n.a. PIF-like transposase [Medicago truncatula] gi|357481665|ref|XP_003611118.1| chr0 101060832 101062673 +
1 domain prediction
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Lj0g3v0230969.1
n.a. Uncharacterized protein TCM_037603 [Theobroma cacao] gi|508783120|gb|EOY30376.1| chr0 119723764 119724219 -
1 domain prediction
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Lj0g3v0245419.1
n.a. n.a. chr0 127213539 127215966 +
1 domain prediction
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Lj0g3v0254679.1
n.a. Uncharacterized protein TCM_037329 [Theobroma cacao] gi|508782705|gb|EOY29961.1| chr0 132226463 132232946 -
1 domain prediction
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Lj0g3v0302149.1
n.a. Uncharacterized protein TCM_037329 [Theobroma cacao] gi|508782705|gb|EOY29961.1| chr0 157142546 157142997 -
1 domain prediction
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Lj1g3v2372260.1
n.a. Uncharacterized protein TCM_037329 [Theobroma cacao] gi|508782705|gb|EOY29961.1| chr1 27748016 27750473 +
1 domain prediction
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Lj1g3v3975890.1
n.a. Trp repressor/replication initiator [Medicago truncatula] gi|124359622|gb|ABN06006.1| chr1 47071107 47071734 +
1 domain prediction
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Lj1g3v4446900.1
n.a. Uncharacterized protein TCM_004298 [Theobroma cacao] gi|508702785|gb|EOX94681.1| chr1 51959394 51961965 -
1 domain prediction
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Lj2g3v0533480.1
n.a. CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 2 [Theobroma cacao] gi|508700881|gb|EOX92777.1| chr2 7137402 7139988 -
1 domain prediction
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Lj3g3v1907630.1
n.a. OSJNBa0079C19.15 [Oryza sativa Japonica Group] gi|57834109|emb|CAE04774.3| chr3 24543780 24547191 +
1 domain prediction
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Lj3g3v3165180.1
n.a. Trp repressor/replication initiator [Medicago truncatula] gi|124359622|gb|ABN06006.1| chr3 39165793 39168067 +
1 domain prediction
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Lj4g3v0575050.1
n.a. PIF / Ping-Pong transposase [Arabidopsis thaliana] gi|18402129|ref|NP_566626.1| chr4 9074419 9076487 -
1 domain prediction
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Lj4g3v0619970.1
n.a. PIF / Ping-Pong family of plant transposases [Theobroma cacao] gi|508706394|gb|EOX98290.1| chr4 9382586 9384527 +
1 domain prediction
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Lj4g3v1957760.1
n.a. Os04g0644200 [Oryza sativa Japonica Group] gi|297603451|ref|NP_001054056.2| chr4 27281897 27284357 +
1 domain prediction
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Lj4g3v2172960.1
n.a. Uncharacterized protein TCM_037603 [Theobroma cacao] gi|508783120|gb|EOY30376.1| chr4 29995490 29997235 +
1 domain prediction
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Lj5g3v0322440.2
n.a. Uncharacterized protein TCM_017356 [Theobroma cacao] gi|508711066|gb|EOY02963.1| chr5 3267913 3270202 +
1 domain prediction
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Lj5g3v2264220.1
n.a. PIF / Ping-Pong family of plant transposase [Arabidopsis thaliana] gi|15233248|ref|NP_191095.1| chr5 33098286 33101242 -
1 domain prediction
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Lj6g3v1211840.1
n.a. Uncharacterized protein TCM_042422 [Theobroma cacao] gi|508725756|gb|EOY17653.1| chr6 15074050 15075002 -
1 domain prediction
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LotjaGi1g1v0057500_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061FY73|A0A061FY73_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0057500_LC LjG1.1_chr1 8050649 8052306 -
1 domain prediction
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LotjaGi1g1v0236100_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2PHB6|A0A0B2PHB6_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0236100_LC LjG1.1_chr1 56067432 56068509 +
1 domain prediction
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LotjaGi1g1v0247800_LC.1
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I3T8V5|I3T8V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0247800_LC LjG1.1_chr1 59492797 59503464 -
1 domain prediction
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LotjaGi1g1v0247800_LC.2
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I3T8V5|I3T8V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0247800_LC LjG1.1_chr1 59494446 59503464 -
1 domain prediction
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LotjaGi1g1v0247800_LC.3
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I3T8V5|I3T8V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0247800_LC LjG1.1_chr1 59497181 59503212 -
1 domain prediction
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LotjaGi1g1v0313100.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
1 domain prediction
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LotjaGi1g1v0313100.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0313100 LjG1.1_chr1 75730811 75737523 +
1 domain prediction
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LotjaGi1g1v0367600_LC.2
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|Q2HTG6|Q2HTG6_MEDTR Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Bacterial adhesion; Found in the gene: LotjaGi1g1v0367600_LC LjG1.1_chr1 84561859 84570102 +
1 domain prediction
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LotjaGi1g1v0377500_LC.1
n.a. with no lysine (K) kinase 6; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q96X54|ABFA_ASPAW Probable alpha-L-arabinofuranosidase A; TrEMBL-Plants: tr|A0A072ULH3|A0A072ULH3_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0377500_LC LjG1.1_chr1 85719931 85721872 +
1 domain prediction
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LotjaGi1g1v0377500_LC.2
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0377500_LC LjG1.1_chr1 85720455 85720968 +
1 domain prediction
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LotjaGi1g1v0443500_LC.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|F8WL75|F8WL75_CITUN Putative uncharacterized protein ORF08; Found in the gene: LotjaGi1g1v0443500_LC LjG1.1_chr1 94069538 94072347 +
1 domain prediction
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LotjaGi1g1v0443500_LC.2
n.a. Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|F8WL75|F8WL75_CITUN Putative uncharacterized protein ORF08; Found in the gene: LotjaGi1g1v0443500_LC LjG1.1_chr1 94069538 94074661 +
1 domain prediction
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LotjaGi1g1v0492800_LC.1
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q7N4V6|MHPB_PHOLL 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase; TrEMBL-Plants: tr|A0A0B2RI15|A0A0B2RI15_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0492800_LC LjG1.1_chr1 100622363 100623601 -
1 domain prediction
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LotjaGi1g1v0704500_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0704500_LC LjG1.1_chr1 127269907 127271078 -
1 domain prediction
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LotjaGi1g1v0704600_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A151SXH9|A0A151SXH9_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0704600_LC LjG1.1_chr1 127274177 127275384 +
1 domain prediction
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LotjaGi1g1v0716300.1
n.a. nuclease; TAIR: AT3G63270.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A151RU46|A0A151RU46_CAJCA Putative nuclease HARBI1; Found in the gene: LotjaGi1g1v0716300 LjG1.1_chr1 128468670 128479491 +
1 domain prediction
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LotjaGi2g1v0057000_LC.1
n.a. Transposon protein, putative, Pong sub-class; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1; TrEMBL-Plants: tr|I1R8Q6|I1R8Q6_ORYGL Uncharacterized protein; Found in the gene: LotjaGi2g1v0057000_LC LjG1.1_chr2 11598005 11598694 +
1 domain prediction
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LotjaGi2g1v0102100_LC.1
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|P23393|T112_STRAL Putative transposase for insertion sequence element IS112; TrEMBL-Plants: tr|A0A0B2SJL0|A0A0B2SJL0_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0102100_LC LjG1.1_chr2 34035853 34036641 +
1 domain prediction
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LotjaGi2g1v0128700_LC.1
n.a. Transposase; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0128700_LC LjG1.1_chr2 47074396 47075479 +
1 domain prediction
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LotjaGi2g1v0165700_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A5BND9|A5BND9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
1 domain prediction
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LotjaGi2g1v0165700_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57575099 -
1 domain prediction
 –
LotjaGi2g1v0165700_LC.3
n.a. Transposase; TAIR: AT5G35695.1 nuclease HARBI1-like protein; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A061EE93|A0A061EE93_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57582141 -
1 domain prediction
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LotjaGi2g1v0165700_LC.4
n.a. CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q32KH0|ARSK_CANLF Arylsulfatase K; TrEMBL-Plants: tr|A0A072V2B5|A0A072V2B5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi2g1v0165700_LC LjG1.1_chr2 57565666 57582141 -
1 domain prediction
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LotjaGi2g1v0167000.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9VI01|A0A0L9VI01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167000 LjG1.1_chr2 57728230 57731349 -
1 domain prediction
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LotjaGi2g1v0167000.3
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9VI01|A0A0L9VI01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167000 LjG1.1_chr2 57728946 57731051 -
1 domain prediction
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LotjaGi2g1v0190100_LC.1
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I1R8Q6|I1R8Q6_ORYGL Uncharacterized protein; Found in the gene: LotjaGi2g1v0190100_LC LjG1.1_chr2 62044863 62046356 -
1 domain prediction
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LotjaGi2g1v0195900_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|A0A0B2SA54|A0A0B2SA54_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0195900_LC LjG1.1_chr2 63002585 63007188 -
1 domain prediction
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LotjaGi2g1v0217000_LC.1
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|I1R8Q6|I1R8Q6_ORYGL Uncharacterized protein; Found in the gene: LotjaGi2g1v0217000_LC LjG1.1_chr2 67157824 67159163 +
1 domain prediction
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LotjaGi2g1v0274600_LC.1
n.a. Transposon protein, putative, Pong sub-class, expressed; TAIR: AT2G13770.1 nuclease; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I1PZ01|I1PZ01_ORYGL Uncharacterized protein; Found in the gene: LotjaGi2g1v0274600_LC LjG1.1_chr2 74641214 74642107 -
1 domain prediction
 –
LotjaGi2g1v0279400_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT5G41980.1 nuclease; Swiss-Prot: sp|B0BN95|HARB1_RAT Putative nuclease HARBI1; TrEMBL-Plants: tr|I3SNS2|I3SNS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0279400_LC LjG1.1_chr2 75092369 75092880 +
1 domain prediction
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LotjaGi2g1v0369500.1
n.a. Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|A0A0B2RMS4|A0A0B2RMS4_GLYSO Putative nuclease HARBI1; Found in the gene: LotjaGi2g1v0369500 LjG1.1_chr2 86681453 86683824 +
1 domain prediction
 –