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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0174100 |
| Transcript ID | LotjaGi2g1v0174100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT1G10000.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q54G02|SPXS5_DICDI SPX and EXS domain-containing protein 5; TrEMBL-Plants: tr|A0A151SMH7|A0A151SMH7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0174100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59195000..59196867) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTGAACTTTCTTCTTTATTAATCTTTCTCAAATATCAAACTCCTGTCACGCTTACACTGATTCTACGCGTGAGTCGG AAATTAGCTTGTTCTGAAAATCCAGATCTTACAGATTCTCAGACCTCAAATTTTCTCTAAGGTACACCTTTCTCGTTTCT ATATTTTAATAGTACTCAAAAAATTCTCAACATAAGTAAAAACTAAGAAGAATGACCTAAAACATACCATTGTACTTATA AAATAAGAGAACCTTGTGCTTCACCACGATCGTGCTACATGCCAGCACGACTGAGATGATCATCACGAGCGTGTTAAAAG GGGCATGATGATTGCTAAACATCACAACGAATGTGCTGCTCCACACAAGGTCGTGTTGGCTCCATCTGGTTTGGTGAAAA CATCTATTAGCTGATTTGGGTCAAGGAATCTGATGGGATATTCTCAGTCAAATCTGCATATGATTCTATTGTTGAAACTG ACTTGGAGTTTGATGAATCAAACTTTAATCTAGTGTGGAAAGTCTGGGCTCCTTCAAATGCTTCAGCACTAGGTTGGAGG GTATTTCTTGACCGCATTCAAACGAAGATGAATCTGGTTCGCAGGAACATCCCAATTTCAAGTTGTGCGTGTCCTTGGTG TGGCATAGCAGAGGAAACCACTTCTCACTTATTATTTGTTTGCCCTTTTGCCTGGTGTGTTTGGTCTTTAATTTTGAGAT GGCTGGGGATATTTTTTGTGCTGCCAGGGGAATCTATGGATCATTTCAAACAGTTTGTGAATTGTTGGTCTTTGGCAACG AAGAGTGGTCTAGCTACAATTTGGCTTGCAACTGTGTGGCATCTATGGCATGGGAGAAATGCAGTTATATTTAGGGAGGA AAATTTGGAAAGTGTTGGGATTTTTGAAGCTGTGAAATTGAAGTCGTGGTCATGGATTAAGGCCTGCAATAAAAATTGTC CCCATTCTTTATCAGAGTGGTTTAATGAACCATTGGCCTGTTTGGGGGATATGTGACTTGATTTTTTAATGTGTTGGGGA CAATATTGCTACTGTATTTGGTATATTCAGGTTGGATCTTGTGAAGTATATTGTATGGTGTGTTTTGTTGTTGGAAGTTT TCTTGTTTCTTTTCATTGGCTGAAGGCTTTTGTTGGTTCATTTGCTCAAGCAGAGTTGGTTTGATCTTGGGGTCGTGACC TGTGCCATTAGTGGGTTTTTTTCTTATGGTTTTAGTCCTTCTTGGAAGTTCCTCTTGGTTCTTAGTAAGGGGTACTCTTT TTCCTTCACTAAGTTTTCTAAAGGGGGTTTTTCCTAGTAAGGTTTTAATGAGGCCTCTTCCTTAGATCCTTCTTCCAAGG AGGGGGAGGGGGTGGGTTTCATTTAGCATTTTTTCTGCTCTTTGTAATTTTTTTCTCCTATTTCTTCACTTGTATTGGAT TGAAGTACCCCTTGTACCTCTCTTCAATATATTTAATTCATTGCCTATCAAAAAAAATCTATAAGCTGATTTGAGGTAGA GATGTAGCGAGTAATAAGAGGTCACATTGCTACTTCCACATGAACAAAGTGATACTCAATCTCAATATGTTTGGTGCAAG AATGAAACATGAGATTGATTGTCATTACATAAAATTATTGTTATCACAAAATAGTTGTGGTGTTTCAGGGAGAGAAACAC CTATATCTTTAATGACATATCTAACTCATGTTAGTTTTGTAGTAATGTGAACATAGAGTGATATTCCACTTCAGTTCTTG AGCAAAACAACAATGAATTGCTTGACCAATTAATATTTTAGGGTATTTCGAGAACAGACCCATTGGAGACAAGTAGGGCC TATAACACCAATGATCAGAGCACATGCG
CDS sequence (LotjaGi2g1v0174100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTGGTTCGCAGGAACATCCCAATTTCAAGTTGTGCGTGTCCTTGGTGTGGCATAGCAGAGGAAACCACTTCTCA CTTATTATTTGTTTGCCCTTTTGCCTGGTGTGTTTGGTCTTTAATTTTGAGATGGCTGGGGATATTTTTTGTGCTGCCAG GGGAATCTATGGATCATTTCAAACAGTTTGTGAATTGTTGGTCTTTGGCAACGAAGAGTGGTCTAGCTACAATTTGGCTT GCAACTGTGTGGCATCTATGGCATGGGAGAAATGCAGTTATATTTAGGGAGGAAAATTTGGAAAGTGTTGGGATTTTTGA AGCTGTGAAATTGAAGTCGTGGTCATGGATTAAGGCCTGCAATAAAAATTGTCCCCATTCTTTATCAGAGTGGTTTAATG AACCATTGGCCTGTTTGGGGGATATGTGA
Protein sequence (LotjaGi2g1v0174100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLVRRNIPISSCACPWCGIAEETTSHLLFVCPFAWCVWSLILRWLGIFFVLPGESMDHFKQFVNCWSLATKSGLATIWL ATVWHLWHGRNAVIFREENLESVGIFEAVKLKSWSWIKACNKNCPHSLSEWFNEPLACLGDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 2 | 103 | 102 | 5.9E-20 | – | |
| Pfam | 2 | 39 | 38 | 8.5E-7 | ||
| Phobius | 28 | 52 | 25 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 53 | 63 | 11 | - | – | |
| Phobius | 64 | 87 | 24 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 88 | 142 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0174100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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