Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0175600 |
| Transcript ID | LotjaGi2g1v0175600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger family protein; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|K7LE93|K7LE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0175600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59408546..59412384) extracted from Lotus japonicus Gifu genome v1.2.
GTAGATTGAGCACTCGCCGAGTGGATTAGTCATTTTGGAATAGTACTGGGCTAAAAAAAAACCAATTAAATCTCCGTTTA AGCCTGGTGAAATTTTCCAGTCCATGGGCTCGAGCCTAAATCAACACAGACAGGCCCGGGCTTAAGCCCGAAGCCTACAT ATCCCAGTCAGGTTTCTGCCAGTCGCTCTTCACACACAGCACCATTCCGTTTCCTCTGCTCCGCTCTCTGAACTGCCGTC CGATCCAGCAAACTGCTTCTTCAGTCTGCAGTGCACCACTGCAGGATCAGGTATGTGTCTATCATATTGTTTCCATGTTA TATCTTGAGCCTTTTTTGCTTCAATTCCAATGCATGGATGCAAAGTTGATGTTAAATTGCAAAAGGATGTTGACTGTGAT TTTGATTTTGATTTTTATGTTTGAGATATGTGAAAGTGATGAATGTTTGTGAGAAAAAGTTGGGACTTGTTGACTATAGT GTTGGTGCTAAGCTTAAATTTTGGTAGTGTAAAAAACTTTTGGAATGTGTAGGAATTTTAGAGTGGAGGAGAGAAAATGT CAAAATGAGTTCATGTTTTTAAAAACAAAAATTCAAGGAAACATAAACCTAGAAAAATGAGGGAAAATGATCACTGTGGA GTGGGAATGTGGGATATAGCCATTCATGAAATATTGATGTTATTTATTTGTTTATTAATAAAATGCAAGCATTTGAGTGA CAATGCAAAATAGTTAACCATCTTTGTATTGTTGTAGATTATTGATTGATGTCTAATTGCTATAATTTTTTTTTTATCTT GTAACTGATTATTAGAGACCGATATTTAGGGTGCATTTGACTAAAAGTTCAATTAAACGCTTTTTCCAATATACACTTGA GGCATGCATAAGTTTATTAGAGAACTAATTGAAAAAAATTAAAAATTGCATATAGGTATAAGCACTTTTATAAGCTAATA TGAGCAGTTTTTTTAAATAAAGTTATAGATCGATCATGAGCTTATCCAAACACTTGCGTAAGTGCTTATGCAATAAGATA AGCTTAAATAAACTCTTCAAACACAATCTTAAACTATTGTTCGGTGATGCTTTTGAGCAATAGTAGCATGCAAATTAAAA ATCAAATCATAACGGCAGTTTTATGATCTGGACAGGTAGTGGTTCAATTCCTTCCATTAAGAATTTATGATCATGCCTTC CTTACAGGATTTGGAAACACTTCTACCTCTTCTTGTATGGCATCATATAAGACAATCTCCGCTGTCTCATTCTCTTCCTT TTACTTGATTGGTGCAAAATTATAGATCTCTTGCTTGGCTCAGCTGTAACAAAAGCACCGAGCAGTTGAATTTGTTTTTG TTCCATGTCGTTGTAAATTCATTTCTGCTTTTGTAAGCAGTGTCTTTTGAATTTGAAGTTTGGGGTTTATTTGTTTTGCT AAGTTTAGTTGACATTTTTTCTCACAGGAGAAAATGACAAATGAGAATATAACAAGCAGTGATATAGATTATGACTATGA AGATTTTAATAGTTCCAAGCGCCCAAAAATGACTTCCAAAGTATGGGAAGAAATGCAGCGAATTCAAACAAGTGATGGTA GTAAAGTTCTGTGCAAACATTGCGGAAAGCTTTTGCAAGATAACTGTGGAACTTCTCATTTGAAGCGTCATTTGACGATA TGCCCCAAGCGTCCAAAACCGGTGGATGTTATTGCTCAAGATCCAATATCTTACTCTTCTGTATATGTTACCAGATGTGC GGCCAAAGGTAAGCATGAAAATTAAATATTTTTAGATGTGCAATCTTTGTTCGCCAAATTCACTTTATCTCCTCATTTAG CTTACTATATAGCTAACCAAGATTCAATCTAATATTTATGGTGATTTGACCATGACAAAAACCTAACCAATTAATGGTTG AATATGCTTAAAACATTGGGTAGGAAATAGCATCAATATGGTAATAGGCTCTGAGCTTTACATGCAAGTTAGTAGATTCC TACCTACAATATATAGAATATATGATTGATTGTGACATTTACTATTAGCTTTGATGCTAAATTATGTTATTCGGTAAGGA AAAAGTTGATAGGTACTCATAGTTTAATTAGTTAGTAGTTCTGTACTTAGTTAGCTTGAGGAGTTTCAGTTAGTTTGAGA AAGGGAATATTATAAATAAGGGAGTATGGCTTTCTTTGGGGAGTTTGTACATTGGGAATAGGGTTAGGTCCTGGTTTCTC GAAACACGAGGAAATTTGAGTGTTATTCGGTATTCTAACCTAATTCCAGGTTCTGCTCCATCTTGCACAGGGTTTGGGAA TTAGGATTCATCAACAAAACTTCATTTTTTTTCTTCATTCTTGATCAGGTTCTTGTGAGAAGTCTTTGCTATTTTTGGCT GTAGTTTGAGAAACTTGATTTTCTGTCTCGTGTTTTGTGATTACGTTTTGCATTTCTTTCAATTGAAATGTGGCTGCGTG TGATTTTTCAATTTGTTCACAGAAGCATCTCTCGATTACCTTTCATAATCAGTTTATTAGTACTATCTTTTTTCATCTTT TTGTAGAATCTGGATTAAACACGGTGCTTATGGCTTGCCCATTGAAGGTTGAACCTAAATCCCAGTTCCCAAGTTTTTCT CAGACTGCAAATGTTCGAGCTCTAACTGTTACTGCATCCACTGGAAATGCTTCCAGTCCTGCAGAACTGGAATCTCCCAG AAATCAAGAGGAGCTGGCTCTGGATGATGTAGAAATGAAAGCATTTTATGCTTCTCTTGATGCTGAGACCTCAGTTACCT CACCTTCCCAAGATACCACCAAAGTCATTACTGAATTATCCAACACTACCACACCTTGTGAAGAGACCAAGAAAGCATTG AAAACACTGCAAGACCTTCTCTCGAAAGACTTCTCTGTTCTGTTGCATACTGGACAGTGTGGTGCCATGAAATCTACAAT AGGATACCTTTCCAAGTTGTCTGCAGATGATGGAATCTCGGCTGAAATGAAGTTGTTGATATTAGAAGTGTCAAGAGAGT TCACTCGCTGGAGTTGTGACTACAACGATGCTAGCAAGAAAATAGAATCTGCCAGCTCCAACATCTTGAAAGCAGATAAA CTAGAAGAAGGTCTTGAAGCTAACAAGAATGAGTTCAAGGAAGTTTTGTCCTTAGAAAATGAGTTAAGTAACCAGCTAGC ATTTTTGGAGCAAAAAAAGAAAGAGCTAGAAGAGCAAATAAATGCAATCAAAGCTAACTTATCTGTTTTTCAAACTGCTA AGGTCACGGCTATTAAGAGAAAAAGGGAAGTTTTTGAAGAAGGAAAGGCTCTCAAAGCACAGAGAGATGAGTTGAGGGAA CAAGTGCCTCACTTGAGGGATGAGAGGGAAGTGGCCAAGAAAATCCAAGATAATATTCGAGCTGAATGGTCAAAGCTTGG TGAAAAATTTGACAAAAGCTTAAATGGGGAAAATTGTGAGTTATTGGATGGTAAATCCATTTAAGCTTGTCCACCTGAAA GTTGCATTTAACAAACTGAATTTCAATTTTAACTAATACTGATATTCATACTCATACCAACTCCATGGTGAGCTAAATTA GCTCTGATATTCGTTATACCTCCATGGTAAAAAGTGAAGCATTTTTGTAAGTGATTTTAATTTAATGATCTTACATTCAC TTGTTTCATTGGACAAAAGATATGTGCAGGTTTTTCAAATTTATGACTTAATATTGATAATGTGAAAAATCAAGTGATTG ATCATAAGCTGGTTTTAGAAATTCGATATGTATGATGCAGCTAGTTTGTTATGTTCAATTAAACCTTTATTTTTTCAGG
CDS sequence (LotjaGi2g1v0175600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAATGAGAATATAACAAGCAGTGATATAGATTATGACTATGAAGATTTTAATAGTTCCAAGCGCCCAAAAATGAC TTCCAAAGTATGGGAAGAAATGCAGCGAATTCAAACAAGTGATGGTAGTAAAGTTCTGTGCAAACATTGCGGAAAGCTTT TGCAAGATAACTGTGGAACTTCTCATTTGAAGCGTCATTTGACGATATGCCCCAAGCGTCCAAAACCGGTGGATGTTATT GCTCAAGATCCAATATCTTACTCTTCTGTATATGTTACCAGATGTGCGGCCAAAGAATCTGGATTAAACACGGTGCTTAT GGCTTGCCCATTGAAGGTTGAACCTAAATCCCAGTTCCCAAGTTTTTCTCAGACTGCAAATGTTCGAGCTCTAACTGTTA CTGCATCCACTGGAAATGCTTCCAGTCCTGCAGAACTGGAATCTCCCAGAAATCAAGAGGAGCTGGCTCTGGATGATGTA GAAATGAAAGCATTTTATGCTTCTCTTGATGCTGAGACCTCAGTTACCTCACCTTCCCAAGATACCACCAAAGTCATTAC TGAATTATCCAACACTACCACACCTTGTGAAGAGACCAAGAAAGCATTGAAAACACTGCAAGACCTTCTCTCGAAAGACT TCTCTGTTCTGTTGCATACTGGACAGTGTGGTGCCATGAAATCTACAATAGGATACCTTTCCAAGTTGTCTGCAGATGAT GGAATCTCGGCTGAAATGAAGTTGTTGATATTAGAAGTGTCAAGAGAGTTCACTCGCTGGAGTTGTGACTACAACGATGC TAGCAAGAAAATAGAATCTGCCAGCTCCAACATCTTGAAAGCAGATAAACTAGAAGAAGGTCTTGAAGCTAACAAGAATG AGTTCAAGGAAGTTTTGTCCTTAGAAAATGAGTTAAGTAACCAGCTAGCATTTTTGGAGCAAAAAAAGAAAGAGCTAGAA GAGCAAATAAATGCAATCAAAGCTAACTTATCTGTTTTTCAAACTGCTAAGGTCACGGCTATTAAGAGAAAAAGGGAAGT TTTTGAAGAAGGAAAGGCTCTCAAAGCACAGAGAGATGAGTTGAGGGAACAAGTGCCTCACTTGAGGGATGAGAGGGAAG TGGCCAAGAAAATCCAAGATAATATTCGAGCTGAATGGTCAAAGCTTGGTGAAAAATTTGACAAAAGCTTAAATGGGGAA AATTGTGAGTTATTGGATGGTAAATCCATTTAA
Protein sequence (LotjaGi2g1v0175600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNENITSSDIDYDYEDFNSSKRPKMTSKVWEEMQRIQTSDGSKVLCKHCGKLLQDNCGTSHLKRHLTICPKRPKPVDVI AQDPISYSSVYVTRCAAKESGLNTVLMACPLKVEPKSQFPSFSQTANVRALTVTASTGNASSPAELESPRNQEELALDDV EMKAFYASLDAETSVTSPSQDTTKVITELSNTTTPCEETKKALKTLQDLLSKDFSVLLHTGQCGAMKSTIGYLSKLSADD GISAEMKLLILEVSREFTRWSCDYNDASKKIESASSNILKADKLEEGLEANKNEFKEVLSLENELSNQLAFLEQKKKELE EQINAIKANLSVFQTAKVTAIKRKREVFEEGKALKAQRDELREQVPHLRDEREVAKKIQDNIRAEWSKLGEKFDKSLNGE NCELLDGKSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 402 | 402 | 2.8E-108 | – | |
| PANTHER | 1 | 402 | 402 | 2.8E-108 | – | |
| ProSiteProfiles | 25 | 77 | 53 | 10.685 | ||
| SMART | 25 | 73 | 49 | 7.5E-13 | ||
| Pfam | 28 | 67 | 40 | 1.6E-5 | ||
| SUPERFAMILY | 28 | 72 | 45 | 1.79E-6 | ||
| Coils | 302 | 336 | 35 | - | – | |
| Coils | 344 | 378 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0175600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…