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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0183800 |
| Transcript ID | LotjaGi2g1v0183800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LIN3|RZ1A_ARATH Glycine-rich RNA-binding protein RZ1A; TrEMBL-Plants: tr|I3SK86|I3SK86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0183800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60772165..60776478) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTTTGGTCCCATAAGGTTTCAACATTGGAACATGGTGACCCAACCTGTTCAAAGCCCATATAAACTTCAATCAAT GTTAATGTTTCTGTTACCTTGGTAGTGTCGAGGAAGAAATGGCTCCTATGGCTAACCTTGTTGTTGGAGTAGCTTCTGTT CCTCTACCTTCACCACCCACAACAAACTCAAGTGCTTCCCCTTTCAACTCCAAGACCCAAACACAAACACTTCATCTCCA TTGCTCTCAAACCAACCACAGAAAAACCCCATTCCCTTCTTCCCTCTCATCACCACTCAGAATCCAAGGTAGTTGTTACC TGTTAGCATGTCTTCCTCCTTCTTCTGAATCCTCAAGCTCATCTCCCAGTGCTAAACCCTCTTCTTCTTCTGCTCCTTCA ACTAGGCTCTACGTCAGTGGTTAGCTACTTTTGCTCTTCTTCTGTTATTACCCGTTTCATTTTTCTTATACCAAACACTC TAAGTTTTGGTTGTTATTGATAAAGATTGCTACTTTTTCATTTTTGCTTTGTGGGTCTCGCTCTAACTGGTTATGGTATT GCTGTATATCAACAATTTTGTTTATAGCTGCAAATGGGAAATTGGGGGAAATCTTGTCTTTTGCTTTTAGAATAAGGATG TTTCTATTGTTTTCATTGAAGGAGATAATGTTACCTGCGGTTAGTTTAAGCACTTGAAACCTGTAGAGTTTTTCGCAGTG TTGTCGTGTTTAACTTGTAGCTGAGATTATGAGGACAGGAATTGGATAATAATCGCCTTGTTCTGCTGAACAGAAGTGGG AGGCTGGTATTTTTGTTTGGATTCTTGTGAATTTGATTTTAAAAGGCAATTTATTATGGGTGCATTTGGGTTAATAGACT AATTAAGCGTTTATGGAAATAAGAGTTTATGCAGTATGCGCGTACTCATAAGCTAATTTGAGAAACTTATTGAAATGAGC TGAAAATAGGTTATAAATAAGCATAAGCTAATCTGAACAACTTATGAAAATAAGCTCAAAGTAACTTAGGTAGGCTATAA GCTATTTGCATAAGCTCTCACAAACACTTACTTAAGCGTTTAGACTATATAAGATAAGCTCAAACAAGCACTTCCAAACA GGGCCTATGTTTGATTTTCGGTTTTAATTTTTAACCTGTAGTTTCAGAAGGCATTCACTATCTACTAAATGTTTATTCGT ATAGCAAAATAACTTCAAAAAAAAGACATGTTGGATGGGAACCGTTAAGTGCAAATGATGTAAGCATCTCATTTGTAATG AATCTTGGTGTTGTTCGTATCTCTTCTGTGATTACTCTTGTTTCAATAGCCATTTGCCATCTTTTGCCACAGTATACAGC CAATCGTTTTTGGATGAGAATTCTTGCAGTTTGTTTTGAATTTTTCGATATTTGATTGTTTCTATGCATATTTTTGGATA TTGAGTTTATACATGTTATTTCTTGTTTCTTTTAGGGCTTTCATTTCGTACCACTGAAGAGAGCTTGCGAAATTGTTTCA AGAATTTCGGTCAACTTGTTGATGGTAAGAACAGAAAAATGTTGATGTGTTCCTCTTTTTCTATTATGCTATGCCATTGA CCACAAGTTAAGGTTTATTATTGTTCTTTGGTTCGCCAATTCTAGCATTTTGTTGGCTTTCCATTTCATTTCTGAAGTAT TTGCTTAACTCTATGAGCAGTCAATCTGGTGATGGATAAACTTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGGTATG CAACGGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGGTTTGATTTTGCAGTTTCTGCTTCTGGTGTCTT ACTGTCTTTATTAGTGGTAGCTCAGAACCTAAATGATGATTTATCTTCTCTATTACTCTGGAGAGCCAGTGTATTCTGTG TTCATTTAGCAAAAAGCACAATTTTAGCTAACAAAACTTCCTCTGATGGGCTTTACATGCTTAAGGGTGTGTTTGGGTAA ACAATAAGCGCTTATGGTGATAAACATTTCTCGCATAAGTGCTTATTCACAAGCTAATTTGAGAAACCTATTGAAATAAA ATGAAAATAGATTAAATGTAAGCATAAGCTGTTATTCATAGCTAATCTGAACAACTTAAGAAAATAAGCTTCAAACAGAT TGCTAGCGATAAGGATTGTGTTAAGAGTTAGGGTTAGGCGTAGAGTCCAGGGTTCAGGGTTTAAGCTAATCTTAGTCTTT TCTCTTTGCGCACAACTTATATGTAGGTCATAAGCTATTTACACAATCTCTCTCAAACACATCCACAAGCTTTTTAACTC TTCCAAACAGAGCCTAAACATAGTATATAAAATGAATATGATCTTTAGGTAACATTCTGAATTCTAATAAACTGAGTGCT GCCTGTGTGACACAATGATCTAGGGAAGCAAGAAAGGGGAAGGGGACAGGGTGATGATGTAAAAGGGAATGTTTTCAGGT TATGCAGAAGCATTGTTTTAGTTTTATATCCTTTGCATGGAGATAGGTTAATTGACATTGTTGGAACTCTATTTGTATGG TAGTTATTTGTATTTGTTCCTTGACTAAGTTTTATATGGCTTATCTGAAGAGTGAAGACTGATCTCAGTAACAAGAGTGG TTTTCTTAAGCAAGAATGTGTTAGGATTCTAAATATTAGGGATTTAGTTTAGAGTCATGGATTGAATTATTTGAGTTGTA AAGGGAACCAGCCCTATTGGAGGAACCAACCTCTGGAGAGGACCCAACCTCTTGTTATTATTATCTTTTAATTTCCAGTT TTTATAATAAAAATACCAAAAAAATTATCGTTTATCCTTTTTTCTCTATTGTTTCGTTGTTAGGACTTTACGGATCCTAA CAGAATATAATCATGATTACATCTGTATTGCAAATCAATAAACTAAATGCAGCTTTTCCTCAGTAAGAAGTCACAAAATA TTTGCAGTTTTTTATGAAGCTGAATCAGATCCAATATTGATTTGTAACTCTTAGTGAAACTTGTGACAATCAAATGTGGT GTTTAATATTATGCACTCTGACTCAGGCTTTATATTTGCTGTAATATTTTTTATGTTTTAAGGCTTTAGATTGTATTGTA TCTATTCTTTTTCTATTTTCCTAGTATCTATGATGAAGGAAAATGGTTGATGGACACCTCATGGGATGTAGATATAAGAA GATTAAGAAATGAACAAAGAGAGATAAGTGATGGGTTTAATATATGATAGAATGTGACAAAAAAATGTATGAGAGGTGGG GGTCCTGTTAGGCTTTTCTTTTGCTGTCAAAGTCCTATTAGGGTGTTTAAAAATCACGATAGTATAATAAGTTAATCTGA AACATGTTTGAAGCTATGTTGGATACTGATAAAAAGGAACTGCTTTTGTAGTTCTTGGATGGTAGAGTCATATTTGTGGA AGTTGCCAAACCGAGATCAGAGCTACGGCAAAGATTCCAGCAAAACACTATGCAGAGATGAAGTTCCTAAGAGTTACAAT GCCCATATGTTCATCTTGGGGTGATGTATACAGAGTCAACATTTAGCATTGAGCTAACCATATATACATTGTACTTTCAT CTGGCTTCCTTCTTCATCTTATCTCTCTAGTTCTACTCCCAACCAAAGGCTTCAGCAATTGTACTCATTGTTTTTACTTT TCGCATACAATTTTGACTATTAAGTTTAAACTTTTGACCTGATTTATAACATGTTTGAGACAGTTCTTCTTTTCTTAGAG TCAATAATATCACCAAAAGCTACTCACAAAGTTTCTCCAAATATTAGAGGATCCTATTTAAGCACAGAAACATTACAACT ATTTCAACAGTTTGTGAACCATAATGCATGTATTTATCATACTTCCATCAATCCATGTTTACTCATTTACACCTGATTTA GCTTAGTTATATAAATTCACTAATGGTTGGAGATTTATACCACCAGATTCTCTTTTTTTATTGACATCTACTGAAGTAAT TGTCATCAAATATCAGAATTTCAGTGGCCATCTTGCCATAAATTTGATTTACTGGTACATTTATCGTGGTTGCGTACTTT ATAATGAATATTATATCAGACGTTGCTTATGTTTGAAGTATTGACTCGACACATACCCAATAAGTGAAGTATTGAATTAA TACAGATAGTGACATCATCTTTTTTTATTTTCTTTTAATCCATGTATCAAGATTAATCTCTTGCCCCAATTGCAGCTCTA CGGTGGGAGGCTGCTGGCCGAAGAATTTACTCCATTCTCATGAGTAACATAATCTTTACAAAAGTTAGAGTAGC
CDS sequence (LotjaGi2g1v0183800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTATGGCTAACCTTGTTGTTGGAGTAGCTTCTGTTCCTCTACCTTCACCACCCACAACAAACTCAAGTGCTTC CCCTTTCAACTCCAAGACCCAAACACAAACACTTCATCTCCATTGCTCTCAAACCAACCACAGAAAAACCCCATTCCCTT CTTCCCTCTCATCACCACTCAGAATCCAAGGTAGTTGTTACCTGTTAGCATGTCTTCCTCCTTCTTCTGAATCCTCAAGC TCATCTCCCAGTGCTAAACCCTCTTCTTCTTCTGCTCCTTCAACTAGGCTCTACGTCAGTGGGCTTTCATTTCGTACCAC TGAAGAGAGCTTGCGAAATTGTTTCAAGAATTTCGGTCAACTTGTTGATGTCAATCTGGTGATGGATAAACTTGCAAATA GACCAAGAGGGTTTGCTTTTCTTCGGTATGCAACGGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTC TTGGATGGTAGAGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACGGCAAAGATTCCAGCAAAACACTATGCA GAGATGA
Protein sequence (LotjaGi2g1v0183800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPMANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFPSSLSSPLRIQGSCYLLACLPPSSESSS SSPSAKPSSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKF LDGRVIFVEVAKPRSELRQRFQQNTMQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 7 | 16 | 10 | - | – | |
| MobiDBLite | 14 | 56 | 43 | - | – | |
| MobiDBLite | 16 | 56 | 41 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 188 | 164 | - | – | |
| PANTHER | 32 | 186 | 155 | 6.3E-59 | – | |
| PANTHER | 32 | 186 | 155 | 6.3E-59 | – | |
| Gene3D | 72 | 185 | 114 | 2.1E-30 | ||
| SUPERFAMILY | 83 | 183 | 101 | 5.24E-31 | ||
| ProSiteProfiles | 95 | 173 | 79 | 19.434 | ||
| SMART | 96 | 169 | 74 | 1.9E-25 | ||
| SMART | 96 | 169 | 74 | 9.0E-4 | ||
| Pfam | 97 | 166 | 70 | 7.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0183800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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