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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0185400 |
| Transcript ID | LotjaGi2g1v0185400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase epsilon subunit; TAIR: AT5G22110.1 DNA polymerase epsilon subunit B2; Swiss-Prot: sp|Q500V9|DPB2_ARATH DNA polymerase epsilon subunit B; TrEMBL-Plants: tr|A0A0L9VHK9|A0A0L9VHK9_PHAAN DNA polymerase epsilon subunit; Found in the gene: LotjaGi2g1v0185400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61145978..61148574) extracted from Lotus japonicus Gifu genome v1.2.
TATTTTCCCGCCCTAATCCCAACCCTGTTGATAGTTGAGACTGAAACAAACACAGCAGCAGCACTAGAGAGAGAAAGTAA AGATGAACGCTTCAACGAGGAAGAAGGTTCAGAAGAAATGCAAGATCAGAGGCTACAATCTCAAACTCGAAGCTCTCGAC GAGATCCTCTCCTACGTTTCCCGCTTCGAAGGCGACCTCGAAGACGATGCCATCGATCTCCTCCTCGATCAGCTCGAACA CGAATCTCGTAACCCCTCTCTCTACCACCTGAATTAACTTATTTCTTCCATTTCGATTCAATTTTTGTTAAACTGAAGCG CTGATCGAAATTTCGCAGTGAATTCCACCATAATCGATAAGGAACCGGTGCACCGCGTGGTGACTCTGCTGTTGAAAGCT GAGGCGGCTGCCGAGGACGACGAGAGCCCTGACGACTCTGCCGCTGCTGCTTCCGCCCTTCGTGTCGTCGATGCGTTCCT TGTTTCTAAGTTTAAATACGACGCTATTAGGAAGCAATTCTACGAGTAGGTTTTCTTGTTCCTCAATTTCTCTCTTGTTT GAAGAGTCCTGCAATTGATCTGTCGAAGCAATGTAAAATGAATTTGGATGTTGAAATTTTTTAGGGCTTATTAAAAAAAT GGAATTTTTTAGGGAAAATTGCGCAAAAGGAACTTCTGATGATTATTTTCCGCGAAAAGTAAATAAATAGCTAATTTTTT TCTTCATTATTCAGAATATAATTTTCTCTGTAGGATAGCTCACGTGTTAGGAGCTGGGGGACACATGGGTTGGGTAGGGG ATGTCCAGGGATCGATTCCTGACGGGTGTAATTTATCTTTCCGATGTACCAAAAAAAAAGAATATGATTTTCTCTCAGGA ACTCAATGCTTTGTAACTATGTCTAGTTTTACTTCTAGCTTTGGTGGTTTTAGGAATTCAAAGTTTCCATGGAACCAAAA GTTGGGGAATTCTGTTTTATCTTAATGGAGTTGTAGTGTTATATATTCTACAACTGTGTATATGGACGGTAAAGCAGGAC AGGTTATAGTTTGATTCATTATGTTTTTGTATGAGTCTCCACTTTAGTTAAGCAAATTGTTGGAAATTTGTGTTGGTTGT TGACTTGTACTTGAACTTGTTTATCATATGGCCACTAATTTAGGCCCATGTTATGTGTTTTTATTTCCAGGCATCCAGGC AGCTTACCGATTCATGGGGACGCATCAGCAAAAGCAGCTCTGTACAGGGATAGGTTTCTGTTGTTATTCCAGAGGCTCTC TCGTGACCAGAATTTTTCAAAGCCTGCTTTCGACTCTGAATTTTCACATTTTGGAAGCTGTGAGGTACTGCTGGATATTG TGAAATGCTGAGAAATGGGCATTCAATGCATACATTCAATTTGATGCTTTTGTCTTGTGATGGGGATTAACATTTAATTT TATACTATGCTTTGTTTGTCAGATATCTCCTATTCAGTCTCTGGTTGGGCGGACAGGTAGAAGATGGGTAATGGGAGTAA TATCTCAGCTGGAGGATGGACACTTTTATTTGGAAGACCTCTCCGCTTCAGTTGAAATCAATTTATCTAATGCTATATCC TTTAGTGCTTGAAAAATAAAATATTTTATGTTATTGAAAGAGGTCCATAATCTTGTTAAAGGTTTTTAATACTTTTTCTT GGGGATAAAGAATAATAAATGAGTGATAAATATTATCTTTAAATGTCAATATAATTACCTCTTTTGGTATTCCATATCTG TCTGAAATGTACAAATTCTTTGTCTGGCTATGGTTGCTCGCAACATATTTGCTCAGGTAGCTGTGTTGGGTTGGGTACAT CCAAATTATGGGTATAGTTCTGTTAGTTTGGTAATCTAAGTGATTGATGGACTTGGTACACATGCTTAAAATAAAATTTT CCCGTCTTCTTAATTTTTATTAATTTCTATCTAACTATCTATAGCTCACTTGTATGCTTGGAAGTACTTTCATCGGTTTC TTTGACTAGCCATACAAGATAACTACAGGATTCTTTTCAGAGAACACCATAGTTGTGGTAGAAGGAGAAATGCTTGTAGA GGGTATTTTTCAGGTTCTTAATTGCATGCCCTTCTCGATATCTACTTCATGTGCTATTCATTTTGTAAAACCAATATATC AGTTGTTTGATTTGTATATGCCTTATTCATATTCAGGATAAAGTTTAATATAGTGGTCACAATTTTTATGACTTCTTTTT TGATTTTGTATATGCTTCTATTCGAAAAGACGATTTAATCGAAATGAAATTTACTAAAGATTTAGTTGCTGCTTCTATGA CTTATTTGGTTTGCTTTACAAGTTACAAGATCTCTTGCTGATGCAACAGTGAACATTTTGCGTGCCCTTTAAAAAGAAAC CTGGACTCAAATGCTGAAGCTGAATTAAACTATCAGTGGAAATACCTTTCCTAGATGCAAGATCTTGATTCTTGAAGTTA ACTATTTTGTCTGTGATGTTATATGCTTTTCTTGTGCCGCTGCAGCCCTTTCCTATGGTGGATTGATGCTACTTGCACAA GAGTGAAGGTGTTTGCATGAGTCTAGTAGGGAGGTTT
CDS sequence (LotjaGi2g1v0185400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCTTCAACGAGGAAGAAGGTTCAGAAGAAATGCAAGATCAGAGGCTACAATCTCAAACTCGAAGCTCTCGACGA GATCCTCTCCTACGTTTCCCGCTTCGAAGGCGACCTCGAAGACGATGCCATCGATCTCCTCCTCGATCAGCTCGAACACG AATCTCTGAATTCCACCATAATCGATAAGGAACCGGTGCACCGCGTGGTGACTCTGCTGTTGAAAGCTGAGGCGGCTGCC GAGGACGACGAGAGCCCTGACGACTCTGCCGCTGCTGCTTCCGCCCTTCGTGTCGTCGATGCGTTCCTTGTTTCTAAGTT TAAATACGACGCTATTAGGAAGCAATTCTACGAGCATCCAGGCAGCTTACCGATTCATGGGGACGCATCAGCAAAAGCAG CTCTGTACAGGGATAGGTTTCTGTTGTTATTCCAGAGGCTCTCTCGTGACCAGAATTTTTCAAAGCCTGCTTTCGACTCT GAATTTTCACATTTTGGAAGCTGTGAGATATCTCCTATTCAGTCTCTGGTTGGGCGGACAGGTAGAAGATGGGTAATGGG AGTAATATCTCAGCTGGAGGATGGACACTTTTATTTGGAAGACCTCTCCGCTTCAGTTGAAATCAATTTATCTAATGCTA AGATAACTACAGGATTCTTTTCAGAGAACACCATAGTTGTGGTAGAAGGAGAAATGCTTGTAGAGGGTATTTTTCAGCCC TTTCCTATGGTGGATTGA
Protein sequence (LotjaGi2g1v0185400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNASTRKKVQKKCKIRGYNLKLEALDEILSYVSRFEGDLEDDAIDLLLDQLEHESLNSTIIDKEPVHRVVTLLLKAEAAA EDDESPDDSAAAASALRVVDAFLVSKFKYDAIRKQFYEHPGSLPIHGDASAKAALYRDRFLLLFQRLSRDQNFSKPAFDS EFSHFGSCEISPIQSLVGRTGRRWVMGVISQLEDGHFYLEDLSASVEINLSNAKITTGFFSENTIVVVEGEMLVEGIFQP FPMVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 5.6E-81 | ||
| Pfam | 5 | 69 | 65 | 1.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA-dependent DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. | ||
| Cellular component | Epsilon DNA polymerase complex | A heterotetrameric DNA polymerase complex that catalyzes processive DNA synthesis in the absence of PCNA, but is further stimulated in the presence of PCNA. The complex contains a large catalytic subunit and three small subunits, and is best characterized in Saccharomyces, in which the subunits are named Pol2p, Dpb2p, Dpb3p, and Dpb4p. Some evidence suggests that DNA polymerase epsilon is the leading strand polymerase; it is also involved in nucleotide-excision repair and mismatch repair. |
Expression pattern of LotjaGi2g1v0185400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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