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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0187600 |
| Transcript ID | LotjaGi2g1v0187600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G68130.1 indeterminate(ID)-domain 14; Swiss-Prot: sp|Q9C9X7|IDD14_ARATH Protein indeterminate-domain 14; TrEMBL-Plants: tr|A0A0L9VIL0|A0A0L9VIL0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0187600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61694185..61697515) extracted from Lotus japonicus Gifu genome v1.2.
AGGGTTTTGTTTCCTTGTGGGGATATTTCCTTTTTTCAATTTTTTTATTTTCATCTTCTGGAGCCCATTGAGCTGCTTGT GGGATCAAGTTTCGAGCTTTAATTTGTGATTGGGTCACACACAACACAGTCTCTCTTTTTGAAAGTTTATTAAGGAGGGC TATTACAGACAATCCCTGCTGAAGATGAGAGTTGGAAAGAAAGAAGAGAGGAACCCAGAGAGAGAAAGAGAAAAGAAAGT GAGAGAAAGCTGATAGCCAAAAAAATAAAAAGCTGAATGTTTAAAAGCAAGTTAAAAGAAAGCTGAGAGGAAACCGAAAG GAAGAAAGGAAGACCTTTTATTTTTTTTCTCTCTTCTTCTTCTTCCCTCCTTCTCTATGTTCTCCCTCCCTCCTAGCTAG GCTTTGTTTGTTCTAGCTAGCTCTTTCATCTTCTCTTACTTTTGTTTCAGTTAATTCTATCACTAAGATAGCCATATTGA TAAGGCTATTACCACACAAGATATCATACACATCTCAAACACTAACCACATAGAGTACCATGATGTTAGCCAATAACTTA TCTCCATCTTCAGTTCCCACTTCTGATCCTTTTTCCTGCACTGAGAATGGCACTTCTACTGCCATCAATAAAAGGAAGAG AAGGCCTGCAGGCACACCAGGTTAATTCACACCCTCACAATCCAATTTCGCTAATCAGTTATAATTATTATGAATTTCTT TCTGTCACAATCCATTGAGATTCAACTCTTATCGTTTCGATTCGTTATATCTTATTATATTAAGTATCTATATCCATATC TATATATTAAAATTGTTAATTCTATTTTTATTTAATCGAACTTGGTTTGGTGGTGGTGATGACGAATTACTGTTTTGTCC ACCTACAGATCCAGATGCGGAGGTGGTGTCTCTCTCACCCAAGACACTACTGGAATCGGATCGCTACGTGTGCGAGATCT GCAACCAGGGATTCCAGAGGGACCAAAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGG GAGACCCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCAGAACCAACCTGCTTGCACCACGACCCGTGTCACGCGTTAGG TGATCTCGTTGGGATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAG GCTATGCAGTGCAGTCTGATTACAAAGCCCATCTCAAAACTTGTGGCACCAGAGGTCACTCCTGTGATTGTGGCCGAGTT TTCTCAAGGTTAGTTTAATCAATTCATTTCATATTATTACAAATTTTTTTCTTCAATCTGCAACCAAGCAGATAGATCTA TGATGATTTTTTCTATCTAGTTCATTTTCTAAACCATTTTTTTCAAAAATTCTATGATTATGGTTTGAGCAAAACTTTCT CTTGTTCTACTTTGGATTTGACTTCAGAAAAGGGAAATATATTTTTTGGAAAGGAATATATATATGGGGTGGAGAAACAA AAGGAGATTATTAATTAAAAAGAAAAAAGTTTGAAAAATATTTGACTGATGGAACCTTAATCAATTTTTTTTTATATTTT TTCAACAAGAAGATCACTGTTTAATGACAGTTGGGGTAGCACGGTTTCCAAAGCTCCGTTTTCCGTTGGTCACATAACCG TTTTGTGTTGTGTGGTGATGGTGGTGGTCTCAAAACCATTTCTGCCATTCCACCAAAACCACCACCACCACCATCTTATA ATCATCTTTTGTGGGATCATTATTCTTTTCCTTGACATTGCATTTTCTTCTATGAGAGCACTACAGAATGAATCTCAAAA TGGGTGTGAGTTCTTGACTTTCTTTTGTCCTTTTTAATTTAGTGGAAACTGGAACCTCTCCCTCCACCCCCCACCATTTC AAAACTTTTCCATCCACTTTTTCTTTGTCTCTTTCCCTTCCTTTTCCTTTCCATACACATTTTGATTTTCCTCTAGAACT CTATATAATCATGAACCCTTTTGAGTGGATCAATACAATTATACAAAACACTAACCAATAATGGTACTTCTTTTCCTCAT CTTACATGCATATATAATAGGGTGGAGAGCTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCCGCCCGGAATC TCAGCCGCTTCAGCAACAACCTCCAGCTGCATGCTTGTCTAGAACTGCTTCAAGCCCAAGTCCATCCAGTGAAACAAACT TCAGCACAGGCCCTTGGCAAACCAGGCTTCAAGTAGTACCACCAAAGCCCATTGAAGTACCTACCATTTTCATGAACCCT ACTCCTATCCATCCTCCTCCTGAAACCTCTTCCAAAAACAACAACAAACTCCACCCTAATTTGGAGCTTCAACTTCAACT CTCCACCACCAACAACAAATCATCAAACCCCATTGAGCTACCTTCTCCAAAGAATGATCAAAACATTAAGTATTCAACTC AGCTTCAACTCTCAATTGGGTCACCAAATTCCAGAGAGAAAAATGAAGCCAGCAATAATAGAAACCTATCACCAAAGGAG AGCAGCAACAGCAATCATGAGAAGGAAAGGCCACTTGGTGGTGGTGGAGGTAGTGGTGGTGGTGGTGCAAACATGGCTCT GATGAGGAACATTCAAGAGCAAGCAAGGGAGAACTTGAGGATAGCCATGGCTGAGAAAGCTTATGCTGAGGAAGCAAGGA AACAAGCCAAGAGGCAAATTGAAATAGCTGAGCAAGAATTCACAAACGCCAAGAGGATAAGGCAACAAGCACAAGCTGAA CTTGACAAAGCGTACAACTTGAAAGAACATGCAATGAAGCAAGTAAACTCCACCATGATGCAAATCACTTGCCATGCTTG CAGACAACAGTTTCAGGCAGCTCAAGATCATGAGAACTCCTTGGTGTTCAGCTACATGTCTTCTGCCATAACCACGGAAG GTGGCGAAGTAGAGAACGATCATCATGGAAAAGATAACTAACTACTCTCAGATATCTCCACCATCATCTTCTTTTCCATG TTTACCTTTCTTTAGTTTTTTTTTTTTTTTACTTCAAGCTAATATCTTTGTGAATTGGTATACCAAGTTAAGTGAGTGAT GTTGATTAATTATGTAAGGTGGGATTAATTAATAGCGTGACGGAGGAAAGAGTGTATTAATTCTTCATGTATCTTGAAGG TTATTGTGAGATGCTCTTTGTTAATTAAATTTGGTATAAATGCAACTATATAGTATGATAATTAAAAGGGTTTCACCACA GCTTTACAACTATATAGTTAAATTTTGATTCCTTAATTATTTAATTCTTGC
CDS sequence (LotjaGi2g1v0187600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTAGCCAATAACTTATCTCCATCTTCAGTTCCCACTTCTGATCCTTTTTCCTGCACTGAGAATGGCACTTCTAC TGCCATCAATAAAAGGAAGAGAAGGCCTGCAGGCACACCAGATCCAGATGCGGAGGTGGTGTCTCTCTCACCCAAGACAC TACTGGAATCGGATCGCTACGTGTGCGAGATCTGCAACCAGGGATTCCAGAGGGACCAAAACCTGCAGATGCACCGGCGG AGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACCCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCAGAACCAAC CTGCTTGCACCACGACCCGTGTCACGCGTTAGGTGATCTCGTTGGGATAAAGAAGCATTTCAGAAGGAAACACAGCAATC ACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCCCATCTCAAAACTTGTGGC ACCAGAGGTCACTCCTGTGATTGTGGCCGAGTTTTCTCAAGGGTGGAGAGCTTCATTGAGCACCAAGATGCTTGCAACAT GGGGAGGCTCCGCCCGGAATCTCAGCCGCTTCAGCAACAACCTCCAGCTGCATGCTTGTCTAGAACTGCTTCAAGCCCAA GTCCATCCAGTGAAACAAACTTCAGCACAGGCCCTTGGCAAACCAGGCTTCAAGTAGTACCACCAAAGCCCATTGAAGTA CCTACCATTTTCATGAACCCTACTCCTATCCATCCTCCTCCTGAAACCTCTTCCAAAAACAACAACAAACTCCACCCTAA TTTGGAGCTTCAACTTCAACTCTCCACCACCAACAACAAATCATCAAACCCCATTGAGCTACCTTCTCCAAAGAATGATC AAAACATTAAGTATTCAACTCAGCTTCAACTCTCAATTGGGTCACCAAATTCCAGAGAGAAAAATGAAGCCAGCAATAAT AGAAACCTATCACCAAAGGAGAGCAGCAACAGCAATCATGAGAAGGAAAGGCCACTTGGTGGTGGTGGAGGTAGTGGTGG TGGTGGTGCAAACATGGCTCTGATGAGGAACATTCAAGAGCAAGCAAGGGAGAACTTGAGGATAGCCATGGCTGAGAAAG CTTATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAAATTGAAATAGCTGAGCAAGAATTCACAAACGCCAAGAGGATA AGGCAACAAGCACAAGCTGAACTTGACAAAGCGTACAACTTGAAAGAACATGCAATGAAGCAAGTAAACTCCACCATGAT GCAAATCACTTGCCATGCTTGCAGACAACAGTTTCAGGCAGCTCAAGATCATGAGAACTCCTTGGTGTTCAGCTACATGT CTTCTGCCATAACCACGGAAGGTGGCGAAGTAGAGAACGATCATCATGGAAAAGATAACTAA
Protein sequence (LotjaGi2g1v0187600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLANNLSPSSVPTSDPFSCTENGTSTAINKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRR RHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCG TRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQQQPPAACLSRTASSPSPSSETNFSTGPWQTRLQVVPPKPIEV PTIFMNPTPIHPPPETSSKNNNKLHPNLELQLQLSTTNNKSSNPIELPSPKNDQNIKYSTQLQLSIGSPNSREKNEASNN RNLSPKESSNSNHEKERPLGGGGGSGGGGANMALMRNIQEQARENLRIAMAEKAYAEEARKQAKRQIEIAEQEFTNAKRI RQQAQAELDKAYNLKEHAMKQVNSTMMQITCHACRQQFQAAQDHENSLVFSYMSSAITTEGGEVENDHHGKDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 10 | 460 | 451 | 4.3E-198 | – | |
| PANTHER | 10 | 460 | 451 | 4.3E-198 | ||
| SUPERFAMILY | 57 | 83 | 27 | 5.23E-5 | ||
| ProSiteProfiles | 60 | 82 | 23 | 10.97 | ||
| SMART | 60 | 82 | 23 | 0.0052 | ||
| ProSitePatterns | 62 | 142 | 81 | - | ||
| ProSitePatterns | 62 | 82 | 21 | - | ||
| SMART | 101 | 131 | 31 | 190.0 | ||
| Gene3D | 123 | 193 | 71 | 1.2E-5 | – | |
| SMART | 137 | 164 | 28 | 100.0 | ||
| MobiDBLite | 192 | 263 | 72 | - | – | |
| MobiDBLite | 192 | 229 | 38 | - | – | |
| MobiDBLite | 240 | 254 | 15 | - | – | |
| MobiDBLite | 304 | 327 | 24 | - | – | |
| MobiDBLite | 304 | 351 | 48 | - | – | |
| CDD | 355 | 422 | 68 | 4.68872E-6 | – | |
| Coils | 366 | 421 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Gravitropism | The orientation of plant parts under the stimulation of gravity. |
Expression pattern of LotjaGi2g1v0187600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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