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LotjaGi2g1v0191000.1

Overview

Field Value
Gene ID LotjaGi2g1v0191000
Transcript ID LotjaGi2g1v0191000.1
Lotus japonicus genome version Gifu v1.2
Description UV-B-induced protein, chloroplastic; TAIR: AT1G48450.1 alanine-tRNA ligase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|A0A072UAR1|A0A072UAR1_MEDTR Plant/T1N15-5 protein; Found in the gene: LotjaGi2g1v0191000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:62241542..62245989) extracted from Lotus japonicus Gifu genome v1.2.

AACATTAATCACAATAAATAAATAAATGACTAACAAAAAGTGAAGTTAAAGTCTAATTTGGAGAAAGTAGTAAAGTATTA TTCTGGTCGTCGCATCCCATCCGACCGTGTACAATCCATAAAAAATAATAATATATCTGCATTTCACCCATTTCTCTTGT CTAATTCATGTAACAGTGACACCAACAACACCTTTACCAATTTTCTCTCGCTAGGGCTCACAATTTTATCTCTGCGATTT CCTTCCTTAAGGTATCATCATCATCATCTAGATTCGTAACCTCTCTCACAGTTGCAAATGGAAGCGGCGGCGGCGGTCAC GGCAACGCCAACTTTCCTCCCATCATCCGCCGGTCCATGTAAGCCGTCGGCGTCGATGTTCGTCGGAAGACCCAACTTGT TGCCCATCCGTTCCAATTTTCCCTTCACCAGTAAGGTATCAAGTCGCTGATCCCAATTTTTCTGATTATGAATTCTGGTT GCGACGATTGCATTTTCTATTTGTCACCGTTCATTACAATATCGTTTGATTTTCTGCTGTTGAAATATTTTTCTTACCGG TATGCATGCTGTTTTGCCAATGCTTGTTGTTGTTCTATTGATTTGCTTTTACTTATGTTCAATTGGATGAGGATGAACTT GAATTCAAATGGGTATTTTTTTTTTTTGATAATTGAATTCATTTGGGTAAATAGAAAGTATAATGATTTTTGTTTAAGAT TGTTTATAGTGCTGAGGTTTTATGATACAATGCAGCTCTATTTTTTTTTTACTAAAAAAATGTTGATGGTTAATCTGAAT CTTACACATGAGATATTTGAAGATATTTTTGCTTGATTGTGTACTCGGGACGGTTGATTTTTTCCCATTATGTATAGTTG CTGGCTTGTCTGAACTACGACGGTGTGATAGTCATTGTGCTTGCTTTCGCAGAATTAGCTTAATTTTATTTGCAGGCGTG CGCTTTGAGGGATTAGTTATATGCTTTCTTACTGTTCTTGGTGGTTGACAGCTACAGACATTTGCATCTAATGCCAAACA AGGTCGAGGGAGACTCTCTGTTGGAGCTAGAAGGGGTTTTGTGGTTAGAGCTGGATCATCGTCTCCTGAGGCATCTGGTT CAAGTTCCGTGATTGCTCCACTGAAGCTGGAGTCTCCAATTGGGCAGTTTCTCTCTCAGATTTTGGTAAGTCACCCACAT CTCGTGCCTGCGGCAGTAGATCAGCAGCTTGAGCAGTTCCAAACCGATCATAATGAACTAAAGGAAAAGCCCTCTGCTTC AGGCACTGACTTAGTTTTGTACAGGTTTGGCATATACTTGATGATATATCTTATTCTACTTTATCACCACCATGTGTTGC TGATAAATCTGGGGAGTTAGTTTCTTGCTAATTACTACTCCCTCCGTTCCAAAACTATTGTAGTTTTAACTTTTTTATTT TGTTTCAAAACCATTGTTGTTTTACATATCCAAAGCACTTTATATTATTCTCTTCCATTCATGCCCTCATTTAATATTGT ATCTCCCAAGTACCACCTCTTATTTCCACCAATCACAATTTTCACCAATTAGTTGACCATTGATTTTCATTCTCTCTCTT TCAAATAACTCATTAAATAAGGGTGTTTGAGTCAAATTATAACATCAATTAATGAACTCTTAAACTTTGTGCAAAAACCT TAAACTACAATAGTTTTGGAACGGAGGGAGTAAAAATTAGATGAAAGGAACTCCATAATCGATTCATACATTAAACTACA TGTCCCTCCTGATGCAGTGGATTGAGGGACCTTACTTGATAGATGATACATTTCACCTGATATACAAGCAAATATTTCTA AGGAAATTTATTAGCGCATGTTAGCTTTGCCATTGTCTATATGATTCATGGCTACGAATTTCTAGAGGAATCTTTGCTGT TTGTATTCCTAACAGTGCCTCTCCTTTGGAGTTTGGAGCGGTACTACTTTATTTTGATATTGATTGGGGGATGTGAAATA TTACTACGAATATTATTTTTAAATGGCCTCTTCCTTGCATGTAAGGTTTGATATTTTTGGTACATGTTTGTAAATATTTC AAATTGCTTTTGTATGGATTTAATTGTAGTTTTATTTTAGAACTATACCTCCAGAGATCACAGAGAGGATTATAGTTTTT GGAACTTTCCCGGAATTTATCTAATTATCCACCCTGAAATCAGATATATCCCTTAAACAGAACAACCATGATTTATTTTC TACAAATAACTGACAATTTGCAGTTTCCTATTTTCAGTATACTTTTAAAACAGATATGCTGATCTGCCATCAATTATTTT CTGCAAATAACCACCATCTAGCAGTTACTCCTGTCGTTTCTTATGCCTCCTAGTGTACAAATAACTGTCATCCAACAGTT AATCTTGTTGTTTTCTTTTCCTCCTAGTGTACACCTTCCAAATGGGTGGCTTAATTGGTTTGTGGACTGACAAATCTGAC CTGTTCCCATCATAATGTATTGAGTTTACTTAATAAGTAGCTGTATTATATTGCATTGATGTATTTGTGGATTCATCTGT GTTTAGTTTAAATCATAAAAAATTTGATATTAAAATAAAAAAATATCGGTAGTAATGATTTGTGTTATCCAATTAGACAA TAGAATTCATGAATGGTTGTTTCTAGCTGTTTTCTGTATTTACCATTTCGCTGGCTTCCAAAATTTTCCAGGAGAATTGC TGAGATTAAAGCTAAAGAGAGGAGAAAAGCACTAGAAGAGATATTGTATACATTGGTGGTGCAGAAGTTTATGGATGCTA ATGTTTCGTTAATACCTTCCATAACCCCAAATCCTTCCGGTCAAGTTGATTCATGGCCAAGTGAAGTAGGAAAAATTGAG GGGCTTCACTCACCTGAAGCCTATGAGATGATTGAAAACCACTTGGGTCTCCTTCTGGGTAGCCGTCAAGGGGATTCAAC AGCTGTAGCTCAGATCAGCAAAATCAGGGCAGGACAGGTCTATGCAGCATCAGTAATGTATGGGTACTTCCTTAAACGAG TTGTACAAAGATTCCAGCTGGAGAAGGCAATAAAAATTCTACCTAATGCTGCAGAAGAGAATAACAGTCACCGAACAATT GTAGACGATACAAGAGTCAGCATTGAAGAGTTCCCTTCTCAAGCTATGCCCCACCCGGAAGTCTCAGCTTGGCCTGGCAG CGGCATCAGCTCAGGGGCATTTGGTCAGGGGACAACAGTATCCAGGTTGCATACCTACATGATGTCCTTTGATGGTGAAA CATTACAAAGATATGCAACGATTAGATCCAAAGAGTCTGTCAGCATCATTGAGAAGCACACAGAAGCATTATTTGGAAGA CCAGACGCTGTAATAACACCGGAGGGGAAAATCAATTCTTCGAAAGATGAAATCATCAAAATTAGCTTTGGTGGTTTGAA GAGACTTGTTTTAGAAGCTGTTACTTTTGGTTCTTTTCTCTGGGATGTAGAGAGCTACGTTGACTCAAGGTACCATTTCG TCCTAAACTGAGTTTTCCTCGCCCTCATGCACCCCAAGGTAAAATTCGTATGGTGTTCGGTGTAGAGTACTGACTAATTT ATTGGTACACCTTATGCCCAATTCCGAAATATTTTTCGCTGATTGATCTCTGTATATACTGACAGTGGATCTGGTATTCA CTGAGAATGAAGGGTTGTCTACAAGTTCGATATTTGCTTATTTAATTGTTTGACCTTTGTATCACGTTGTATCCTTACAA GTGAATTAGCATCTCTTGTTCTGTCCTTTTGTGTAATTTGGGTAGGTGTTAATGCTTTGACCTTGTTATGTTAGATTGGC CCTCCAATTCAAAATTAACTGTGCAAGGTGCAGTTTCTGCATTCTATGGTCCTTATTTGATTTTTATTTATTTTATATTT ATAAATAAATTGCAGAAGTTTTTAGTCGTTTATGGTCGAGATTGTTGGGTTTGCTATTTCAATACTGCGTTATATAATCA TGTTTGTATGCCGTGTCACTGATGATGTAAATGTTCTCACCATGATTGATCGAACTGATAGTGAAAATTGACAATGGACT ATGTCCACTTCTTACAAAACTTGAAAGTTGAAATCAAGTTCAACATAGGGGGGTTACTTTTTGCACTGGTTTTATTTCAC CCACACCACCCAATTAGAATGCAAAATTAGTGTCAGAAAATAATTGGGTTCCAGAAAATTAATATGTCTGTTTGGGTGGT GTGGTGTGGAACAAAGGGCACCGGAAGTGGAAGGCTGATATGTGACCCTGTAGGCTGTAGCGACTTAGGTATCGGTTTTT TTAACACTTTAGTCAAGCTACTAGAACCTTGTATGTACTCTTGTCCTACTATAAATGGTCATTCTCACATACCAATTTGA TTTCGGAACCAATTACACTCATATTGAGATAGAAGGAACCAATTAAAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCGGCGGCGGCGGTCACGGCAACGCCAACTTTCCTCCCATCATCCGCCGGTCCATGTAAGCCGTCGGCGTCGAT GTTCGTCGGAAGACCCAACTTGTTGCCCATCCGTTCCAATTTTCCCTTCACCAGTAAGCTACAGACATTTGCATCTAATG CCAAACAAGGTCGAGGGAGACTCTCTGTTGGAGCTAGAAGGGGTTTTGTGGTTAGAGCTGGATCATCGTCTCCTGAGGCA TCTGGTTCAAGTTCCGTGATTGCTCCACTGAAGCTGGAGTCTCCAATTGGGCAGTTTCTCTCTCAGATTTTGGTAAGTCA CCCACATCTCGTGCCTGCGGCAGTAGATCAGCAGCTTGAGCAGTTCCAAACCGATCATAATGAACTAAAGGAAAAGCCCT CTGCTTCAGGCACTGACTTAGTTTTGTACAGGAGAATTGCTGAGATTAAAGCTAAAGAGAGGAGAAAAGCACTAGAAGAG ATATTGTATACATTGGTGGTGCAGAAGTTTATGGATGCTAATGTTTCGTTAATACCTTCCATAACCCCAAATCCTTCCGG TCAAGTTGATTCATGGCCAAGTGAAGTAGGAAAAATTGAGGGGCTTCACTCACCTGAAGCCTATGAGATGATTGAAAACC ACTTGGGTCTCCTTCTGGGTAGCCGTCAAGGGGATTCAACAGCTGTAGCTCAGATCAGCAAAATCAGGGCAGGACAGGTC TATGCAGCATCAGTAATGTATGGGTACTTCCTTAAACGAGTTGTACAAAGATTCCAGCTGGAGAAGGCAATAAAAATTCT ACCTAATGCTGCAGAAGAGAATAACAGTCACCGAACAATTGTAGACGATACAAGAGTCAGCATTGAAGAGTTCCCTTCTC AAGCTATGCCCCACCCGGAAGTCTCAGCTTGGCCTGGCAGCGGCATCAGCTCAGGGGCATTTGGTCAGGGGACAACAGTA TCCAGGTTGCATACCTACATGATGTCCTTTGATGGTGAAACATTACAAAGATATGCAACGATTAGATCCAAAGAGTCTGT CAGCATCATTGAGAAGCACACAGAAGCATTATTTGGAAGACCAGACGCTGTAATAACACCGGAGGGGAAAATCAATTCTT CGAAAGATGAAATCATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTAGAAGCTGTTACTTTTGGTTCTTTTCTC TGGGATGTAGAGAGCTACGTTGACTCAAGGTACCATTTCGTCCTAAACTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0191000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAAAAVTATPTFLPSSAGPCKPSASMFVGRPNLLPIRSNFPFTSKLQTFASNAKQGRGRLSVGARRGFVVRAGSSSPEA SGSSSVIAPLKLESPIGQFLSQILVSHPHLVPAAVDQQLEQFQTDHNELKEKPSASGTDLVLYRRIAEIKAKERRKALEE ILYTLVVQKFMDANVSLIPSITPNPSGQVDSWPSEVGKIEGLHSPEAYEMIENHLGLLLGSRQGDSTAVAQISKIRAGQV YAASVMYGYFLKRVVQRFQLEKAIKILPNAAEENNSHRTIVDDTRVSIEEFPSQAMPHPEVSAWPGSGISSGAFGQGTTV SRLHTYMMSFDGETLQRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIKISFGGLKRLVLEAVTFGSFL WDVESYVDSRYHFVLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31808:SF4
1 416 416 1.8E-193 –
Phobius
SIGNAL_PEPTIDE
1 18 18 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 - –
PANTHER
PTHR31808
1 416 416 1.8E-193
IPR038925
Phobius
SIGNAL_PEPTIDE_H_REGION
3 14 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
15 18 4 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
19 416 398 - –
Pfam
PF05542
141 263 123 3.8E-21
IPR008479

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0191000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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