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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0191200 |
| Transcript ID | LotjaGi2g1v0191200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07820.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q40312|PGLR_MEDSA Polygalacturonase; TrEMBL-Plants: tr|A0A151S016|A0A151S016_CAJCA Polygalacturonase; Found in the gene: LotjaGi2g1v0191200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62273914..62276241) extracted from Lotus japonicus Gifu genome v1.2.
GACAAAGTTTCAACAATAATCAACATGGATATGAGTCTGATCAGGTCCACAGCAATCGTTTTATTCTTACTTTTGCTTTC TGGTTCTGCTCAATCCATTGTCTTTGATATAAGAACATTTGGTGGAGCACCAAATTCGGATATAACACAGGTAACATCAA GTTTAATTTGCCACAAAAATTAAGTTTTGAAGCAGAGCTTTCTCCCCATATCATCATTATCATATCATTGTTATTATTAT TATTTTGCAATTGATTTGTATGATATATGTTGTTAAAGGCTTTCTTAAATGCTTGGAAACAAGCATGTGCATCAACAAGT CCAAGCAAAATTGTGATTTCTAAAGCGACATACAAGATGAATGCAGTAAATGTTAAAGGTCCTTGTAAGGCTCCCATAGA GATTCAAGTTGATGGCACAATTCAAGCACCAACAGACCCAAATGCCCTTAATGGGGCTTTTCAATGGGTTACAATTGGAT ATGTTGACTATTTTACCTTATCAGGAAATGGTACTTTTGATGGTCGAGGTGCAAGTGCTTGGAAACTTCAAAAAGCTTGC GGAGCAACTTGCTCAAAGCGTTCCATGGTAACTAATGTGGCCTTTTTAATGTCATATAACTTGTTCCTTTTTTAATTGCA AATTGTATTATTAAAAAAGAGGTCATGTCATATATATAACTTGTACATGTACCCAAAAAATGCTAACAAAATTTGGTTTC TTGTGAATACAACAGAACATTGGTTTTAATTTTCTAAAGCATTCAACTGTTCGGAGTGTAACTTCAAAAGACAGCAAATT TTTTCATGTAACCCTTTTGGGATGCACCAACTTCACATTTGATGGCTTTAAGATCATCGCTCCAGGTAACCAGGCTCAGA ACATAGGTTTAAAAGGGGACAATCATCCCTCTCCAACAGAAAAAAATGTCTCTAAATATAAGTGACATTTTTATTAAGGT GTCAGACTTTTGTTGCATATTCATTTTTTTTTCTTCGTTTTGTCCTTTACAGGTGATAGCATTAGCATCAACACAGATGG AATCCATATTGCGAAATCAACTGATGTGAAAATTCTTAATAGCAACATTGCCACCGGAGATGACTGTGTCTCATTGGGAG ATGGCAACAAACACATTACTATCCATAACGTGAAATGTGGACCTGGACATGGCTTTAGTATTGGAAGCTTGGGAACGAAC CCAACTGAAGAGCCTGTTGAGAATATTATAGTCAAGAATTGTACTTTGACAAATACCCAAAATGGTGTAAGGATCAAGAC ATGGCCTACTGCTCCAGGAACATCTCCTGTTACCAACTTGACCTTTGAAGATATTACCATGGTTAATGTCTATAACCCCG TGATCATAGACCAACAATACTGTCCTTCTAATTTATGCTCAAAACAGGTATTTAGTCAATAGCTACTCTAAAACTTAATC ATATCTAATTTCTTCTAGGATCTTCTTAAGTTACATGATAGTACCTTGTGAAATTTTGTGTATATTTCTCTTTATAAATA TTTAGAAATTTTGTGTTTATATCTTTTCATCTCTATATTATAGGTATGAAAAGAGAGATAAACAACAAAACTTTAAAATG ACAATGTGACATGAAGTATCCACATGAGACAATCTCAATCCCTCTATCCATTACCTTTTGTATAGTCATGCTAGAGATGC TATCATCTAAACCACTATCCTTTTCAACTTTTATAACTTGTTTGGTTCAACTTATTTTTCCTTAGAATCAAGTCTGACAT CCAAAATTTTCTCCACATAATTGATTTTGACTTTACAATCAATGAATATTTTAAAATATGCGCTAAATCTTATTTACTGA GCATTTAACAATCAATGTAGTCATTCTTATACATTTTTTTGTCTGTTTTGTTCATGCTTGCAATGGCTCAGAGTCCATCA AAAATCAAGATAAGCAATGTTACATTCAAGAACATTAAGGGCACATCAGAAACAAAGGATGGAGTGATTCTTAACTGTAG CAGTGGGGTTCCATGTGAGGGTGTGGAACTAAGTGATATTTCTCTCACATTCAATGGAGCTCCAGCAATGGCAAAGTGTG CAAATGTCAAACCCATTATTATAGGAAAAGCCCCTAGTTGTAGTGCTTGAAGTCTTGGATGGACTCAATGTCCTCTGATT AACATTGCCTTTTGTTTTCTCTTAGTAGATTCACAAAGCTAGCCTTAGAATGTGACTATTATTTGTAATCCCTAGTGAAG AATCAATTGGGTAATGACTAGTATATTGTCACTTCTTGAAATATGAAATGTTTCAAATATTTGAGACTCAGAGACTGAAA AAATTTCA
CDS sequence (LotjaGi2g1v0191200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATGAGTCTGATCAGGTCCACAGCAATCGTTTTATTCTTACTTTTGCTTTCTGGTTCTGCTCAATCCATTGTCTT TGATATAAGAACATTTGGTGGAGCACCAAATTCGGATATAACACAGGCTTTCTTAAATGCTTGGAAACAAGCATGTGCAT CAACAAGTCCAAGCAAAATTGTGATTTCTAAAGCGACATACAAGATGAATGCAGTAAATGTTAAAGGTCCTTGTAAGGCT CCCATAGAGATTCAAGTTGATGGCACAATTCAAGCACCAACAGACCCAAATGCCCTTAATGGGGCTTTTCAATGGGTTAC AATTGGATATGTTGACTATTTTACCTTATCAGGAAATGGTACTTTTGATGGTCGAGGTGCAAGTGCTTGGAAACTTCAAA AAGCTTGCGGAGCAACTTGCTCAAAGCGTTCCATGAACATTGGTTTTAATTTTCTAAAGCATTCAACTGTTCGGAGTGTA ACTTCAAAAGACAGCAAATTTTTTCATGTAACCCTTTTGGGATGCACCAACTTCACATTTGATGGCTTTAAGATCATCGC TCCAGGTGATAGCATTAGCATCAACACAGATGGAATCCATATTGCGAAATCAACTGATGTGAAAATTCTTAATAGCAACA TTGCCACCGGAGATGACTGTGTCTCATTGGGAGATGGCAACAAACACATTACTATCCATAACGTGAAATGTGGACCTGGA CATGGCTTTAGTATTGGAAGCTTGGGAACGAACCCAACTGAAGAGCCTGTTGAGAATATTATAGTCAAGAATTGTACTTT GACAAATACCCAAAATGGTGTAAGGATCAAGACATGGCCTACTGCTCCAGGAACATCTCCTGTTACCAACTTGACCTTTG AAGATATTACCATGGTTAATGTCTATAACCCCGTGATCATAGACCAACAATACTGTCCTTCTAATTTATGCTCAAAACAG AGTCCATCAAAAATCAAGATAAGCAATGTTACATTCAAGAACATTAAGGGCACATCAGAAACAAAGGATGGAGTGATTCT TAACTGTAGCAGTGGGGTTCCATGTGAGGGTGTGGAACTAAGTGATATTTCTCTCACATTCAATGGAGCTCCAGCAATGG CAAAGTGTGCAAATGTCAAACCCATTATTATAGGAAAAGCCCCTAGTTGTAGTGCTTGA
Protein sequence (LotjaGi2g1v0191200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMSLIRSTAIVLFLLLLSGSAQSIVFDIRTFGGAPNSDITQAFLNAWKQACASTSPSKIVISKATYKMNAVNVKGPCKA PIEIQVDGTIQAPTDPNALNGAFQWVTIGYVDYFTLSGNGTFDGRGASAWKLQKACGATCSKRSMNIGFNFLKHSTVRSV TSKDSKFFHVTLLGCTNFTFDGFKIIAPGDSISINTDGIHIAKSTDVKILNSNIATGDDCVSLGDGNKHITIHNVKCGPG HGFSIGSLGTNPTEEPVENIIVKNCTLTNTQNGVRIKTWPTAPGTSPVTNLTFEDITMVNVYNPVIIDQQYCPSNLCSKQ SPSKIKISNVTFKNIKGTSETKDGVILNCSSGVPCEGVELSDISLTFNGAPAMAKCANVKPIIIGKAPSCSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| SUPERFAMILY | 11 | 388 | 378 | 2.99E-107 | ||
| Gene3D | 16 | 387 | 372 | 3.3E-107 | ||
| PANTHER | 18 | 376 | 359 | 2.8E-123 | – | |
| PANTHER | 18 | 376 | 359 | 2.8E-123 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 392 | 368 | - | – | |
| Pfam | 52 | 380 | 329 | 2.8E-92 | ||
| SMART | 175 | 203 | 29 | 1000.0 | ||
| SMART | 204 | 225 | 22 | 890.0 | ||
| SMART | 227 | 247 | 21 | 6800.0 | ||
| SMART | 257 | 278 | 22 | 0.64 | ||
| SMART | 288 | 309 | 22 | 1700.0 | ||
| SMART | 322 | 349 | 28 | 1100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0191200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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