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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0191800 |
| Transcript ID | LotjaGi2g1v0191800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH-quinone oxidoreductase subunit I; TAIR: AT1G16700.1 Alpha-helical ferredoxin; Swiss-Prot: sp|P80269|NDUS8_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; TrEMBL-Plants: tr|I1MEF5|I1MEF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62317720..62321009) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGCATTTTTAGCTCGGAAATCACTTCAAGCTCTTCGTACCCGCCAGCTGGTAAGATCAATCTGGTTTTTTATTCT CGGTTATTTGTGTAAAAGTATTCAACTTTTGTCCAGTTATCTAGTATGGTTAACAATTTCTCATATGGGTCATTTTTTGT TCTAGGATTAGCTCAATGTTAATGAATCCTTCATTGTTTTGCTTTTTCTAGGCTGTGGCTGGTCAAGGACTGCAGAGCTC CCAGAATTATGGCATGCGATTAAGTGCACACTCCTACGCTACCAAACATTCATTCTCGAACGATAAAGGTCTGTCGTTTC TCTTACCATCCTTGTGTATATATTTTAGTGATTCTTGTAGAATGGTCATTGTTTTGCAAACAGAATTGTTGAGAACAGTT TCAATGAATAGATTTAGTGATTATTTTCTAGCCCGGATTATTGCATGTAAAATGGCAATCTAGTTTTTGATTCTCCATAC TGTAGACAAAATGAACTAGCTAGAAGATGGTAATGTGTTAGGTTTGCATGCATTGTTACAAAAAAGACTCTCTTGAGATA TCTCAGTTGAGGTGCAAAACATGTAAGGGGGAGCTCAGAACTCAGAAGTTCAAAAATTGCTCGCACTCCACCCTCTTCCT TATCATGGGGCTGCCCCTTTTGGATCCTTGAAGTCCCCTCAACCCTACCCCCCAACAAAGAAAAAACATCTAATCTAAAG CCTATCCTATTTGTTTCAGATTTTTTCAATTTATGTTTGTTAGGATCCCCGAAATAAGATCAGAAGATTCAGAACCAAAC AACAAATAAAAAACACAGATATTGTAATGCTATTTGAACTTGTATTATTAAGTATGTATAAATTATGGTATAATAACTAT GGAGGATTTCTATTTAGCTTTAAAACTAGAGGCTAATCAGTAATCACAGAGTATATGAAAGAAGAAGAGGAATAAAGGAG GAGAAATATTGTGGAGTGGGAATAGATCGGATGATCTCATTTCACTGCTTCCCTATTCTCTCCTATGGTATTATAACTTC TCTGTTACCTTCAAAAGAAATCCGTCAAATTGCTGACTGTTACTCTCCTTCTTCAGCTCCTTCTCAATCCCTACATTCCT GGATCTCCTGCCAGCTGTCCCCTATTTTTAGATCCGCTGATTAATTTTCCACGTTTGCATCCCTACCTACTGGTATCTTG ACATTCACTTTTATCTTAAAAAACCACTTTTAGAAACTTTTTAGCGTGTTTGTTTCATCTTTGGAGAAAAAAATCAGAAC CTGAAAAAGATTTCTGATCATTGTGAGAACTTACTTTGAGTAACTTCTAATTAAATATGTAACTATAAATACCTTAAAAT ATAAGTGCTTTTATAATTGTAACTATGTGAAAAACAGTAAATGCTTTACTTAAAATATCTAAATAATAAACTGCTATTTT TTCAGAACTTTTAAGCTTAATTAAATGGGCCCTAAGTGGATCCAAGCAGTGACTTTTTAATGAACAGACATAACACTTAA CTTCACCAAATAACTTCAGTAGCATAATCATTTATGACTGTCAATTGATTTATCTACCGGTTCTCCATTTGATTCTTGTG CATTTGTTTCATTTTTTCGTCCCCTTCATATATATCTGATTTTTTTGTGTGCTCAAAATGCAGATGACGAAGAAAGGGAG AAACTTGCAAGGGAAATTTCAAAGGATTGGAGTTCTGGTATTTATTTGGGAGCCTTTTGTTTTCAGTTGGATTTTCCTAT GTTTTCTGTGATGTAATTAAATCCTTGCTTGCTGATGCTTTGGTTGACAGTGTTTGAACGTAGCATCAACACACTTTTTC TCACTGAACTAGTTCGAGGTCTAATGCTGACTCTGAAATACTTCTTTGAACAAAAAGTTACTGTAAGTGTCTTCTAAAAC TATTTGTCTGGCCAAGATTATTGCAGCTTTTTGTTAAATGCATGACCTCTTTAATGCAGATCAATTATCCATTTGAGAAA GGCCCTTTGAGCCCTCGTTTCCGCGGTGAACATGCACTCCGACGGTATCCAACAGGAGAGGAACGTTGTATTGCTTGCAA ACTTTGTGAAGCTGTAAGGCTTTGAAGATTTATCCAGTATTGTCTGTTTAATGCATACTAGCAATGACATATTTTGCATA TGTCAACTGTATGTAGATGTTGCAAAATGTGGTTTGTAGTTGGTTAATGTAGACATAAATGTGCAGCTGTTTTTGAATTC TAATAACACATTGCACAAAGTGTAAGACACAAAGATTTGATAGGTTTACAAATCTGTGGCATATCATTCGTTGAACCAGG TATAGGAAAATGGACTTGCATTCACTAATAAAAAGAGATCTGTCCATTTTAGCCGTCCGATATAGAACTGTCATTGCCTT AAAGGCTGTAATGGGTATATGTTGAATTCTTTTCTTTATAAAAAATACACTCAAGTGCCATGTAGCAGTAGGACAAACAA ACAGCTAGCAGCCTAGTAGAGAGTACCTGGAATTTGAGAATACCTGGAATTTGATAGCTGGAATTTGATAGCTACTCACT CTCAAAACATAGGCTGTTGGCAGTTCCTAAATTGTGAAATCTTGCCAGTGCAAAAAAGTATTACTTGATAAGCAAGTGAT CCCAATTTTATATTAAATCTCTCATTTTCTAGAAATCTGAAAGTACCAGCTAACCCCAAATAACTGCTAGAATCTTAATA AGTAATAACTATTTTGAATTTGTCTAAATAATGCTCTATTATCAGATATGTCCTGCTCAAGCAATCACGATTGAGGCTGA GGAGCGTGAAGATGGCAGCCGCAGGACAACTCGGTGAATTTCCTTTCTTGTCTGCCTCCCATTATCTTCCCCATTACATT CCTCACTGTTTCTCTGTAATTTGTCAAAACTTTCAGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTC AAGAGGCATGCCCTGTTGATGCTATCGTTGAAGGACCGAACTTTGAATTTGTTACAGAGACTCACGAGGTTTGTTTTCAT TCCCTTCACATTGAATAACGTAACTGTGATCTGATAGTGCCTGCCAGTCTCTCCTTATTTTCTGTTAATTATATGCTTAA ATACTATCTGTTACTCTGTTAGTGCGTTTCAGCAATTGTTTCTTTCTTAGTAATTATGTGTTCAACTGTTGCAGGAGCTT CTGTATGACAAAGAGAAGCTGCTTGAAAATGGGGACCGATGGGAAACTGAAATTGCTGAGAACCTGAGATCTGAAAGCCT TTATCGCTGA
CDS sequence (LotjaGi2g1v0191800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCATTTTTAGCTCGGAAATCACTTCAAGCTCTTCGTACCCGCCAGCTGGCTGTGGCTGGTCAAGGACTGCAGAG CTCCCAGAATTATGGCATGCGATTAAGTGCACACTCCTACGCTACCAAACATTATGACGAAGAAAGGGAGAAACTTGCAA GGGAAATTTCAAAGGATTGGAGTTCTGTGTTTGAACGTAGCATCAACACACTTTTTCTCACTGAACTAGTTCGAGGTCTA ATGCTGACTCTGAAATACTTCTTTGAACAAAAAGTTACTATCAATTATCCATTTGAGAAAGGCCCTTTGAGCCCTCGTTT CCGCGGTGAACATGCACTCCGACGGTATCCAACAGGAGAGGAACGTTGTATTGCTTGCAAACTTTGTGAAGCTATATGTC CTGCTCAAGCAATCACGATTGAGGCTGAGGAGCGTGAAGATGGCAGCCGCAGGACAACTCGGTATGATATTGACATGACC AAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCTATCGTTGAAGGACCGAACTTTGAATTTGTTAC AGAGACTCACGAGGAGCTTCTGTATGACAAAGAGAAGCTGCTTGAAAATGGGGACCGATGGGAAACTGAAATTGCTGAGA ACCTGAGATCTGAAAGCCTTTATCGCTGA
Protein sequence (LotjaGi2g1v0191800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHYDEEREKLAREISKDWSSVFERSINTLFLTELVRGL MLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMT KCIYCGFCQEACPVDAIVEGPNFEFVTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 2.2E-122 | – | |
| PANTHER | 1 | 222 | 222 | 2.2E-122 | ||
| Hamap | 70 | 206 | 137 | 29.132 | ||
| TIGRFAM | 79 | 200 | 122 | 8.2E-52 | ||
| SUPERFAMILY | 96 | 206 | 111 | 3.1E-28 | – | |
| Gene3D | 96 | 221 | 126 | 1.8E-42 | – | |
| ProSiteProfiles | 114 | 143 | 30 | 9.995 | ||
| Pfam | 122 | 176 | 55 | 4.7E-13 | ||
| ProSitePatterns | 123 | 134 | 12 | - | ||
| ProSiteProfiles | 153 | 182 | 30 | 10.743 | ||
| ProSitePatterns | 162 | 173 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Oxidoreductase activity, acting on NAD(P)H | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0191800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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