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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017900
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.236s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050859.1
n.a. NADH dehydrogenase subunit I [Lotus japonicus] gi|13518491|ref|NP_084849.1| chr0 17289825 17290334 +
2 domain predictions
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Lj0g3v0259339.1
n.a. NADH dehydrogenase subunit I [Lotus japonicus] gi|13518491|ref|NP_084849.1| chr0 134780268 134780706 +
2 domain predictions
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Lj0g3v0336519.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr0 176212005 176212349 +
2 domain predictions
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Lj1g3v3740570.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 42988414 42994267 +
2 domain predictions
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Lj1g3v3751710.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43041544 43045809 -
2 domain predictions
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Lj1g3v3751710.2
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43043427 43045809 -
2 domain predictions
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Lj2g3v0636870.1
n.a. NADH-quinone oxidoreductase subunit I [Medicago truncatula] gi|358344860|ref|XP_003636504.1| chr2 10387802 10391624 -
2 domain predictions
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Lj2g3v0636870.2
n.a. NADH-quinone oxidoreductase subunit I [Medicago truncatula] gi|358344240|ref|XP_003636199.1| chr2 10387802 10392434 -
2 domain predictions
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Lj2g3v1560740.1
n.a. PREDICTED: ABC transporter E family member 2-like [Cicer arietinum] gi|502161914|ref|XP_004512327.1| chr2 24840959 24846505 -
2 domain predictions
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Lj2g3v3034040.1
n.a. F-box protein SKIP28 [Medicago truncatula] gi|357521249|ref|XP_003630913.1| chr2 39198692 39200584 +
2 domain predictions
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Lj4g3v0485140.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr4 7960029 7960773 -
2 domain predictions
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Lj4g3v3112880.1
n.a. F-box protein SKIP28 [Medicago truncatula] gi|357521249|ref|XP_003630913.1| chr4 41432503 41434317 +
2 domain predictions
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Lj6g3v1915840.1
n.a. 4Fe-4S ferredoxin, iron-sulfur binding [Medicago truncatula] gi|124359951|gb|ABN07967.1| chr6 21514216 21520000 -
2 domain predictions
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Lj6g3v1915840.2
n.a. 4Fe-4S ferredoxin, iron-sulfur binding [Medicago truncatula] gi|124359951|gb|ABN07967.1| chr6 21516422 21520000 -
2 domain predictions
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Lj6g3v1915840.3
n.a. 4Fe-4S ferredoxin, iron-sulfur binding [Medicago truncatula] gi|124359951|gb|ABN07967.1| chr6 21516422 21520000 -
2 domain predictions
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Ljchlorog3v0013320.1
n.a. PREDICTED: NAD(P)H-quinone oxidoreductase chain 4, chloroplastic-like [Cicer arietinum] gi|502182490|ref|XP_004516946.1| chloro 113502 114057 -
2 domain predictions
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Ljchlorog3v0013340.1
n.a. NADH dehydrogenase subunit I [Lotus japonicus] gi|13518491|ref|NP_084849.1| chloro 115625 116134 -
2 domain predictions
 –
LotjaGi1g1v0218600_LC.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9UIZ5|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC LjG1.1_chr1 48345422 48345950 +
2 domain predictions
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LotjaGi1g1v0616900.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116347831 116354076 +
2 domain predictions
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LotjaGi1g1v0616900.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116348266 116353523 +
2 domain predictions
 –
LotjaGi1g1v0617600.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116432456 116441491 -
2 domain predictions
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LotjaGi1g1v0617600.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437122 116441459 -
2 domain predictions
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LotjaGi1g1v0617600.3
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437230 116441401 -
2 domain predictions
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LotjaGi2g1v0191800.1
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT1G16700.1 Alpha-helical ferredoxin; Swiss-Prot: sp|P80269|NDUS8_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; TrEMBL-Plants: tr|I1MEF5|I1MEF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191800 LjG1.1_chr2 62317226 62321764 -
2 domain predictions
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LotjaGi2g1v0191800.2
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT1G16700.1 Alpha-helical ferredoxin; Swiss-Prot: sp|P80269|NDUS8_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; TrEMBL-Plants: tr|I1MEF5|I1MEF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191800 LjG1.1_chr2 62317720 62321009 -
2 domain predictions
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LotjaGi2g1v0349000.1
n.a. ABC(ATP-binding) family transporter; TAIR: AT4G19210.1 RNAse l inhibitor protein 2; Swiss-Prot: sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2; TrEMBL-Plants: tr|A0A0L9URH1|A0A0L9URH1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349000 LjG1.1_chr2 82582411 82588625 -
2 domain predictions
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LotjaGi2g1v0349000.3
n.a. ABC(ATP-binding) family transporter; TAIR: AT4G19210.1 RNAse l inhibitor protein 2; Swiss-Prot: sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2; TrEMBL-Plants: tr|A0A0L9URH1|A0A0L9URH1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349000 LjG1.1_chr2 82583439 82588271 -
2 domain predictions
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LotjaGi2g1v0349000.4
n.a. ABC(ATP-binding) family transporter; TAIR: AT4G19210.1 RNAse l inhibitor protein 2; Swiss-Prot: sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2; TrEMBL-Plants: tr|A0A0L9URH1|A0A0L9URH1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349000 LjG1.1_chr2 82583439 82588541 -
2 domain predictions
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LotjaGi6g1v0258700.1
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160513 57168017 +
2 domain predictions
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LotjaGi6g1v0258700.2
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160513 57168017 +
2 domain predictions
 –
LotjaGi6g1v0258700.3
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160513 57168017 +
2 domain predictions
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LotjaGi6g1v0258700.4
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160688 57168188 +
2 domain predictions
 –
LotjaGi6g1v0258700.5
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160703 57167889 +
2 domain predictions
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LotjaGi6g1v0258700.6
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160703 57167889 +
2 domain predictions
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LotjaGi6g1v0258700.7
n.a. NADH-quinone oxidoreductase subunit I; TAIR: AT3G13640.1 RNAse l inhibitor protein 1; Swiss-Prot: sp|Q00388|VHUB_METVO Polyferredoxin protein VhuB; TrEMBL-Plants: tr|A0A151RCT3|A0A151RCT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0258700 LjG1.1_chr6 57160741 57167842 +
2 domain predictions
 –