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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0192700 |
| Transcript ID | LotjaGi2g1v0192700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1-like 1; TAIR: AT1G14760.2 KNOX meinox protein; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|G9BXE7|G9BXE7_LOTJA Fused compound leaf 1; Found in the gene: LotjaGi2g1v0192700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62424303..62428072) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGGTGAACAGTTTGAGTTTTGGCATTTTCGGTTGGGGAATGAATGAATGAGTTAGTAAAAAAAGAAAAAAGACAGA AAACTGGTTATACATCAGGATTCAGAGGCTCCACGCATTCAGTAACCCCTCCCCATTGCTCGAGAAAACTTTGAAGTGTT GCTTTCATCAGTTGGAAAAAGAGGAAGCAAAAAGCCCTCACCCCCCCTTCCCCTTCCCCTTCTGAGTTTTTCTGACTCAT GATTCTCTCTTAATTACCACGTATGCATGCAAGGGTCACTTCCAAAAGTGGGATCGAGCATCTCATGAATCTCACTGACC TCACCTCCAATTTCATCCTGATACATATTTTGTAGTACACTTGTGTGAATAGTATATATGAGCTAGCACTTGTATATCTG GTGTTTCAGAGGTTGGTTTCATCCACTCAAAAATAGATAGAATAGATATCATATAATGGAATCTAAGAGGAACACTGTTG TTGACAACTACAAAGAAGAAGAAGAAGAAAGTGAAGTGGAAAACAATGAGACCCTCAAGAGAAGAATCTCTAGTCATCCT CTCTATGAGCTTCTGGTTGAAGCTCACTTAGACTGTTTGAAGGTCTCTTATCTCTTTCTTTCTTTCTCTCTTTTCCTTTC CTTCTTCAATATATGCTCTGCCTCTCATAAAATCATATAAAACCAAGCTATGGTTCAAAACTTCAAATTAATGTGTTTTG TTATATATAAAATGTGTATGTAAATATATAGATCTACAATATGTCACATGGTGAAGCTTCATCATCTTTAAGATTACTCT TTTCTCATGAACTACAACATCAATATTTTTTTTCTCATGAATATCAAATAATGATAAAAAGACATGGACTTATTATCCTG CAGATGGATTTCTAAAGACCAAATATAGTGTCAAGAGAGAGAAGATCAATTTGAACTCACAAAAAAATTATGTTCTTATT ACCCTTCAAGCCCAAAGTTTTTTTATAGCTTTAAGCTCTCATAGTTGAAAATTTGTGGGGATCATAGCTTGTTGGTTACC ACTGCCATATGCATATTAAAAATGAAGTTTTACCCATCAAACTCTTTAGCATCATGACATTTGCAGTTGATAAACTAGTT AACCTGTTGGTGCAATTTATCTGCACAAAATATCATGATTCATGCTGACAATAGCTCCCCCTACAAACACCTCATTTTAC TGTTTATTTCTATTTTCTTAAATTTCTCTATTCTTCTTTGTGGCTCTGTGTCTCTGTTGTTGGATGATTTAAGTATGAGT TAGTGTTTCACATGAGTTAAGCATGAGTTTGATGAAACTTAAAAAATGTGATCTATAAATCCAATTCCATATCTATCAAT AGTTTTCCTTCATTCAATTTACAGTTATGAAACATACACTATTACACACACCTCTCAAAACACCCAAATTTTTCCTCTAT CTCTTTTTTCTTATCAAAGCATATTTATTTCTTCCATCTTTTCTTCATTTCTTTTTTTCATTCTATATATAGATGTCTAC ACCCTTTACAGTTCTTTGGAACATTTTCCTTCAATTTAAGCATGAAAATTTGAAGATGCATGGTATAATCAATAGGTAGG TCTTGTGATTCAGGTTGGCGACATTTCCAAGTTGGACAGAGAGCTGAAGAAAGAGCAGAAGCAAGCAATAATGAAGAAAC AAAACTCGGGCATGTTCAACCACTCTGAGCTTGATCTCTTCATGGTAATCAAATGCTTCCCATTTTCCTTCTCTCTCATT TCTTTCTCTCACTAGCTAGCATAGGTTTTCACAGATGCCAATGAATGAATGTTTTGGCAGTAGATGTGTCAAGTCAAGTA CTGAAAAATCAGTCAAATGACATGACATTATGGGAAATTTTAATTTGATTGACGGATGCATACTTCATGGTTAATTGGCT AAAGCATCTGGCTCCTGCTTGAAAGAGACCACACTGAGCATAGTTTTTTGTTCCTTCCATCACTGACATTTTTTTCCTAC TTGTCTCTGTGTTTGTGCTAGTGTTCAGATATTGTCTTTTGACATTAAGTTTTAGGCCGCAAAAGGCTACTAGATGATGT TACTCAGCACTTACATAAATGCTATGATTTATGAATTCTCAAATCAGGATTCAGGGTTGTGATAAATGCTATGTTTGACA TTTATTTAATCATAACTTGACATACTTTCCCTTTTCACAAGCAATTTTTAGTTGGGACTTAGCTTTTATGTCTGAAATTC TTAAAGGGAAAAAAATTGAAGGCCAATAGCAACATCTCATCAGAAAATTGTGTTAGTATTATCCAACATTAGAAAATACC ATGATTGATTAGATACTCAGGAAAGTGTTATATCATCATCTCTGAAACATGAGCTTTCTAGAATACTTTTTGACATAAGT AGGTATCATATGTTATAGACCTTTAAAGGGACTGCACCATATAAATATCCTTGTGGAAACTTTTATAATTGCTGAAGAAT TGAGCTCCACAAACACTTGGGGGGAGGCAGTGTAGATCTCTAATCCTGAGTTCCTCATAGCTTATTTTAAATAATATAAG TTAAAATGAATGGAAAAGATAAGTCATTATAATTTTTGTTTTAAATGTAATTAGAGTTTAAAGCATAAGTTCTTGCTGTA ACAAAAAAATGCAACTTCTTGAATCTTTTGGAATCAATAAGTAACACTTTAACTAACAAAATCTTATATATCTATGAAAG GATAAGTCATTAGTAATATACATGCTTTTGCAAAAAAAAGTTAAAAAAACTTTAGCTAACTCTTAATTAAGGGGACTAGT TTTTTCTTTGACATAAAGCACACTGGAAACTGTGATTTCCAATTCCCATTGAAATATTGCAAAACAGAACATGGATTGGT AAAAACCAATATGCTTTTTCCAAAATTTGAACTTTTAAAATTATTACAATTAAGATCCCTCATTACTTTTACTCTGTTAA AAACTCTCAAACTCTCAAACTCTCATTTTCTAAATGATTCCTTCACCCTCAAACACTCGAAACATTAAATTTATCTAAAA TTAAAAAATCTCTAATTTATCCTTCAACTTTTATTATTTTTTCACTTTTAAATTTTAAAAGTATTGTATATCACTAATCC ATCATAAATATCAAAATAATTGAATAGACAATGAAAATTCAAAAACTTTTTGTAAACAAAAATTCGCATGGGATTAAATT TGCTTAATTTTAAAAAAGTTTAATCCCTTAAGCCATATCACATCATAAACTCCAGAGAGTTTACAAATGAAGTAGTTCTA AAACTATCCTTGTGTTAAAAGATTTGATTGATCTCTATAAAGTGGTGGTGTTTTGATTGAACTAATTGTGCAGGAAGCAT ATTGTTTGGCACTTAACAAGCTTAAAGAAGCAATAGAGGAACCACAAATGAAGTCCATGGCTTTCATAAACAACATGCAT TCACAACTTAGGGAGCTCACTGATGCAACCATGCCTGCAGCACCAGCTGAAGAAGCAGCTATTGCATCTTCAAGTGAGTG CACATTCAGAAAAAGCCCTACAATTTAGTTAGAGGATGGTGACTTAATTTTCAGTGTCAGTGTCGGTGTAATAATATTTA TCTCGCAGCTAGTTAGCTAGGCTACTAAGGCTTCCATTATTATTCTCCTATTGTCAAGTCTCTGCAGGTTAAGCGTTTTA ATATGTGAATGTAAAAGGCATGATGACTATTGTTATAAACTAATCTGCACCAATTCCTCTCATTTTCACATTAATGATTC TTAGCGCGCG
CDS sequence (LotjaGi2g1v0192700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTAAGAGGAACACTGTTGTTGACAACTACAAAGAAGAAGAAGAAGAAAGTGAAGTGGAAAACAATGAGACCCT CAAGAGAAGAATCTCTAGTCATCCTCTCTATGAGCTTCTGGTTGAAGCTCACTTAGACTGTTTGAAGGTTGGCGACATTT CCAAGTTGGACAGAGAGCTGAAGAAAGAGCAGAAGCAAGCAATAATGAAGAAACAAAACTCGGGCATGTTCAACCACTCT GAGCTTGATCTCTTCATGGAAGCATATTGTTTGGCACTTAACAAGCTTAAAGAAGCAATAGAGGAACCACAAATGAAGTC CATGGCTTTCATAAACAACATGCATTCACAACTTAGGGAGCTCACTGATGCAACCATGCCTGCAGCACCAGCTGAAGAAG CAGCTATTGCATCTTCAAGTGAGTGCACATTCAGAAAAAGCCCTACAATTTAG
Protein sequence (LotjaGi2g1v0192700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKRNTVVDNYKEEEEESEVENNETLKRRISSHPLYELLVEAHLDCLKVGDISKLDRELKKEQKQAIMKKQNSGMFNHS ELDLFMEAYCLALNKLKEAIEEPQMKSMAFINNMHSQLRELTDATMPAAPAEEAAIASSSECTFRKSPTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 150 | 150 | 9.4E-54 | – | |
| PANTHER | 1 | 150 | 150 | 9.4E-54 | – | |
| Coils | 9 | 29 | 21 | - | – | |
| SMART | 25 | 65 | 41 | 2.8E-10 | ||
| Pfam | 27 | 51 | 25 | 2.4E-9 | ||
| Coils | 53 | 73 | 21 | - | – | |
| SMART | 72 | 123 | 52 | 3.2E-8 | ||
| Pfam | 79 | 122 | 44 | 1.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0192700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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