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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005540
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.729s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0083039.1
n.a. homeobox protein knotted-1-like 2-like [Glycine max] gi|388556558|ref|NP_001253999.1| chr0 32735870 32741850 -
3 domain predictions
2 GO terms
Lj0g3v0183889.1
n.a. PREDICTED: homeobox protein knotted-1-like 1-like isoform 1 [Glycine max] gi|356535014|ref|XP_003536044.1| chr0 89359129 89365195 +
3 domain predictions
2 GO terms
Lj0g3v0256649.1
n.a. PREDICTED: homeobox protein knotted-1-like 6-like [Cicer arietinum] gi|502124921|ref|XP_004498724.1| chr0 133249274 133250866 +
3 domain predictions
2 GO terms
Lj0g3v0268639.1
n.a. PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Cicer arietinum] gi|502167120|ref|XP_004514061.1| chr0 139094554 139101624 +
3 domain predictions
2 GO terms
Lj0g3v0268639.2
n.a. PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] gi|356562896|ref|XP_003549704.1| chr0 139094554 139101624 +
3 domain predictions
2 GO terms
Lj1g3v1853300.1
n.a. PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] gi|356507510|ref|XP_003522507.1| chr1 22414816 22418331 -
3 domain predictions
2 GO terms
Lj2g3v0658090.1
n.a. fused compound leaf 1 [Lotus japonicus] gi|357640304|gb|AET87101.1| chr2 10470945 10474459 -
3 domain predictions
2 GO terms
Lj2g3v1415210.1
n.a. Knotted-1 homeobox protein [Caragana korshinskii] gi|480328047|gb|AGJ83725.1| chr2 22341905 22348536 +
3 domain predictions
2 GO terms
Lj2g3v2003070.1
n.a. PREDICTED: homeobox protein knotted-1-like 7-like [Glycine max] gi|356495645|ref|XP_003516685.1| chr2 30618377 30623966 +
3 domain predictions
2 GO terms
Lj2g3v2900220.1
n.a. PREDICTED: homeobox protein SBH1-like isoform 1 [Glycine max] gi|356554468|ref|XP_003545568.1| chr2 37693798 37699050 -
3 domain predictions
2 GO terms
Lj4g3v0133580.1
n.a. KNT1 [Glycine max] gi|351734506|ref|NP_001237352.1| chr4 1410523 1414730 +
3 domain predictions
2 GO terms
Lj6g3v1088990.1
n.a. PREDICTED: homeobox protein knotted-1-like LET12-like isoform X1 [Cicer arietinum] gi|502167116|ref|XP_004514060.1| chr6 13173550 13177829 +
3 domain predictions
2 GO terms
Lj6g3v1812030.1
n.a. Knox class 1 protein [Pisum sativum] gi|3426304|gb|AAC32262.1| chr6 20192094 20197620 +
3 domain predictions
2 GO terms
LotjaGi1g1v0065200.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|V7B6U2|V7B6U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9011829 9017015 +
3 domain predictions
2 GO terms
LotjaGi1g1v0065200.2
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3RK69|A0A0S3RK69_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9011888 9017043 +
3 domain predictions
2 GO terms
LotjaGi1g1v0065200.3
n.a. Homeobox protein; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|K7KB19|K7KB19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 LjG1.1_chr1 9012585 9016691 +
3 domain predictions
2 GO terms
LotjaGi1g1v0380300.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7ATS5|V7ATS5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0380300 LjG1.1_chr1 86191427 86195512 +
3 domain predictions
2 GO terms
LotjaGi2g1v0192700.1
n.a. Homeobox protein knotted-1-like 1; TAIR: AT1G14760.2 KNOX meinox protein; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|G9BXE7|G9BXE7_LOTJA Fused compound leaf 1; Found in the gene: LotjaGi2g1v0192700 LjG1.1_chr2 62424303 62428072 -
3 domain predictions
2 GO terms
LotjaGi2g1v0322900.1
n.a. homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|R9R650|R9R650_9FABA Knotted-1 homeobox protein; Found in the gene: LotjaGi2g1v0322900 LjG1.1_chr2 79803177 79810759 +
3 domain predictions
2 GO terms
LotjaGi2g1v0322900.2
n.a. homeobox 1; TAIR: AT1G23380.1 homeobox protein knotted-1-like 6; Swiss-Prot: sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6; TrEMBL-Plants: tr|G7K060|G7K060_MEDTR Homeobox knotted-like protein; Found in the gene: LotjaGi2g1v0322900 LjG1.1_chr2 79803743 79810376 +
3 domain predictions
2 GO terms
LotjaGi2g1v0430100.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100 LjG1.1_chr2 92713610 92720111 +
3 domain predictions
2 GO terms
LotjaGi2g1v0430100.2
n.a. Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100 LjG1.1_chr2 92714200 92718781 +
3 domain predictions
2 GO terms
LotjaGi4g1v0010900.1
n.a. homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151SU49|A0A151SU49_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi4g1v0010900 LjG1.1_chr4 1372175 1376568 +
3 domain predictions
2 GO terms
LotjaGi4g1v0282700.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 LjG1.1_chr4 65460885 65469550 -
3 domain predictions
2 GO terms
LotjaGi4g1v0282700.2
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 LjG1.1_chr4 65460940 65469550 -
3 domain predictions
2 GO terms
LotjaGi4g1v0282700.3
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 LjG1.1_chr4 65462788 65469246 -
3 domain predictions
2 GO terms
LotjaGi4g1v0282700.4
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 LjG1.1_chr4 65462879 65469246 -
3 domain predictions
2 GO terms
LotjaGi5g1v0039100.1
n.a. Homeobox protein knotted-1-like 1; TAIR: AT4G08150.1 homeobox knotted-like protein; Swiss-Prot: sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2; TrEMBL-Plants: tr|I1M8Y1|I1M8Y1_SOYBN KNOX-like DNA-binding protein; Found in the gene: LotjaGi5g1v0039100 LjG1.1_chr5 6579676 6585859 -
3 domain predictions
2 GO terms
LotjaGi5g1v0230100.1
n.a. Homeobox protein knotted-1-like 1; TAIR: AT1G70510.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1; TrEMBL-Plants: tr|I3SV38|I3SV38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0230100 LjG1.1_chr5 53740431 53747569 -
3 domain predictions
2 GO terms
LotjaGi6g1v0207800.1
n.a. Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|A0A0H3WB94|A0A0H3WB94_PEA Class II knotted-1-like 10 homeobox transcription factor; Found in the gene: LotjaGi6g1v0207800 LjG1.1_chr6 50547983 50553353 +
3 domain predictions
2 GO terms
LotjaGi6g1v0289900.1
n.a. homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3S3Z4|A0A0S3S3Z4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0289900 LjG1.1_chr6 60711844 60717585 +
3 domain predictions
2 GO terms