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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0193900 |
| Transcript ID | LotjaGi2g1v0193900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|A0A151S8X4|A0A151S8X4_CAJCA Putative syntaxin-24; Found in the gene: LotjaGi2g1v0193900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62700915..62702448) extracted from Lotus japonicus Gifu genome v1.2.
CAGACATAATTAACTTCCATAGAATATATTTGTCATTACACATAAAAAGTCTCCTTGTCACTTGTCAATTGTCATTGCTT GTTACTCAAGCTGTTGAAGAGTTCATCCAATCATCCGGTTTCAAAAGTCAATATGCTCATGTACTTTGAATAATTGAATT TGCAACGAAATCACCAAGAGAAACTCAAGCAAAACACACCATAACCTTAAACTCATCAATGATCACCTCTTATAAATTCA AACAAACAAACATGTTTGCACCACATCTCATCTAAACCAATCATCACATACTCAAAAAATCAGCTCCACCATGGGTTTTG GATCCCGCTGCTTCTGCTGTTGCTACTGCACAATCTACATGCTCATGTTCATGGTCATGATTGCCAGCATCATCTTCTGG ATAATAATCTCCCCCTCAAGTGTCAAATTCCACATAACCGATGCATCGCTCACGCGCTTCAACCTCACAAGCGACCACAA CCTGTATTACAATTTCAGGGTCAACATCACAGTTAGAAACCCCAATGACAACATCATAGTGTACTATAGGAGGATCACAG CAATTGCTTGGTACAAAGATAATGACTTTGCTTTTTTCAGTATAACACCCTTTGACCAAGGCCACAAGAACACCACATTC CTTGGGCCTGTGGTGTTTGAAGGGCAGAGTGTGATGAAGCTAGGATCTAAGCAACTTGCCGAGTACGCGGAAGAGTCACG TATGGGGATTTACACTGACTTGGCTGTGGATTTGGATCTTCGAATTAGAGCCAAGTATGGAAGGTTCAAGAGTAGCCGTT TTAATCCGCCCGTTGTGCAGTGTCGTCGCTTAAGAGTTCCTTTGATTATTTCTAATGGTAAATCACCACCTTCTTTCAAT GTCACAAAATGTAGAACTGGTTATTTCTTTGCAGATCGTGATGCAGATGCAGGAGCCTGATCAATATAAATCCTCACACC CCCAAAGAAATTGAACGTCACAGCTCTTGATGTACCCAGAAAAAATCATCATGTTTTGGGATGTTTATTTCTTTGTGGGA TGGTCGTTTCTGAGATCCTGTTTGCTAGCTACTTTGGTTAAGCAAAGGTTATTTGCAATGTGTTTTTGGAGGTTTTGGCC TTCAGGTGATCGTTGTTTTTTTTTTTTATTTCATGCCTATTTGAGAGGGATGTTCTCAACTTTTATTGTTATATCAATAT GGTATTTCTGCTTTAAAAAAAATGAACCACTTCATTTAAATGTTCTCATAATGGAGTGCCAGTTGTTTTATTTAAGGATG ATGGTGTACATATGAATAGCAGCGGACACCCAAGGAATATATTTGTTAGTGGGGTTTTAGCTGCTGCTAGTATTAGTAGC AGTTAAAAACCGCCACTAACACATATGTCCCTTGAATATCCATAGAATCGATATGTAAAGCTAACATTTAATTTTCTTTG TTTTATGAGTTTGTATTCTAGTTCTTAATAAGATGTGGTTCTTGTGCTTGATTGCTATATCTGCAGCATTCAATTTTCAT TTCCAAAAGTGCAT
CDS sequence (LotjaGi2g1v0193900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTTGGATCCCGCTGCTTCTGCTGTTGCTACTGCACAATCTACATGCTCATGTTCATGGTCATGATTGCCAGCAT CATCTTCTGGATAATAATCTCCCCCTCAAGTGTCAAATTCCACATAACCGATGCATCGCTCACGCGCTTCAACCTCACAA GCGACCACAACCTGTATTACAATTTCAGGGTCAACATCACAGTTAGAAACCCCAATGACAACATCATAGTGTACTATAGG AGGATCACAGCAATTGCTTGGTACAAAGATAATGACTTTGCTTTTTTCAGTATAACACCCTTTGACCAAGGCCACAAGAA CACCACATTCCTTGGGCCTGTGGTGTTTGAAGGGCAGAGTGTGATGAAGCTAGGATCTAAGCAACTTGCCGAGTACGCGG AAGAGTCACGTATGGGGATTTACACTGACTTGGCTGTGGATTTGGATCTTCGAATTAGAGCCAAGTATGGAAGGTTCAAG AGTAGCCGTTTTAATCCGCCCGTTGTGCAGTGTCGTCGCTTAAGAGTTCCTTTGATTATTTCTAATGGTAAATCACCACC TTCTTTCAATGTCACAAAATGTAGAACTGGTTATTTCTTTGCAGATCGTGATGCAGATGCAGGAGCCTGA
Protein sequence (LotjaGi2g1v0193900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFGSRCFCCCYCTIYMLMFMVMIASIIFWIIISPSSVKFHITDASLTRFNLTSDHNLYYNFRVNITVRNPNDNIIVYYR RITAIAWYKDNDFAFFSITPFDQGHKNTTFLGPVVFEGQSVMKLGSKQLAEYAEESRMGIYTDLAVDLDLRIRAKYGRFK SSRFNPPVVQCRRLRVPLIISNGKSPPSFNVTKCRTGYFFADRDADAGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 33 | 27 | - | – | |
| PANTHER | 10 | 200 | 191 | 2.2E-99 | – | |
| PANTHER | 10 | 200 | 191 | 2.2E-99 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 34 | 209 | 176 | - | – | |
| Pfam | 65 | 164 | 100 | 2.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0193900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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