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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0200400 |
| Transcript ID | LotjaGi2g1v0200400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein DETOXIFICATION; TAIR: AT5G52450.1 MATE efflux family protein; Swiss-Prot: sp|Q9FHB6|DTX16_ARATH Protein DETOXIFICATION 16; TrEMBL-Plants: tr|A0A0S3TCM5|A0A0S3TCM5_PHAAN Protein DETOXIFICATION; Found in the gene: LotjaGi2g1v0200400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63801458..63805443) extracted from Lotus japonicus Gifu genome v1.2.
ATCAATTTAAGCATTTAAACATCCATTCTAATTTTATAAAACTCATTTTAAAAGACACTTTTTCACCCAAAAAAAAAATA TAATTAACAGATGTGTTTATCCTACATTAACTTGTTCACCAAACGTCACATAGAGTTAGTCCAAGGCAGCAAAGAAAAAC CTGACAAATCAAATTGATCAATTTAAGCATCCTCAACAGACATTCTAATATTTTAAGAGTAATAACAGATTTGTTTATCC TATATTAACTTGTTCACCAAACTTCAAATAGAATTAGTCCCTTAAGGCAGCTAGCAAAACTTGGCAAATCAAATTGATCA ATTTAAGCATTCTCAAAAGCCATTCTAATTTTTAAAAGGCACTTGTTCACAAAACAAAATAAAGATATGTTATCCTATAC TGTTCATTCAACTTCACATATGTTAACTTGTTCAATTGTTCTTTTTTAAAATTCTACATCCATTCAATTTTTCAAAAAGT AATTTCTTAAAGGAACTTGTTCACAAAACAAAATAACAGATTTGTTTATTAATCCTATGTTAACTTGTTCACCAAACTTC ACATAGAATTAGTCCTTAAGGCTGCAAACTATGTCAAGGGCAACAGAAAGAACAGAAGTTCTTGAAGAAGTGAAGAAACA GTTATGGCTAGCAGGACCTTTAATAGCTGTGGGCCTCCTAAATTATTTCCTAAATGTTATATCTGTCATGTTTGTTGGAC ATCTCAGTGAGTTGGATCTCTCAGGTGCTTCCATGGCCACTTCTTTTGCATCAGTGACAGGTTTCACTTTATTGGTGAGT TCGGTTTTCCTTAAACTCCCCTTTCAGATTGATAGCTTGTAGTATAGTACCCTTTTTAATGAATAAGAATCTCAGTTCTG TGTTGGTCGGTTGTGAAAGGTTATATATAGCTCTGAGCACTATTTATTCTTGATAGAATCTAGTCTTACATTGAGTTTAT ACACTCAATTTCTACACTCGCTTATTACATGCAAGTCTTTTTTTTCATAGAATGTAATAAAAAGATGATGTGCTTTATAA AGTTTTCCTTTATTATTTTGTTTGCTTAATTTTGAAGATCATTAACATTTTGGAACTAAGAACTGTCAGAGAAATATATA TAAATTCAATACAATTAGTTTAAAATAAAGCAGCTAAGCTGAACTAATATCAATTATTGTGAGTGTCAGTCTGTCAGTGT GTGAAGTGTATAATGTTTACCCTACAAATTGCAAACTTATCTTTTCAAGGAAACAACTAATAAGTAGGCACGCAATGAAA TGTGATCACAGTTATTTTATTGTTTCTCTGATGATTATTGGTTAAAACAGACAGGAATGGCAAGTGCCTTGGACACCTTA TGTGGCCAGTCATATGGAGCAAAGCAGTATCAGAATTTAGGCATATACATGCAGAGGGCCATGGTCGTTCTTACAGTTGT AAGCATTCCAGTAGCAGTTATTTGGGCAAATACAAGATTCATTCTTGTTTTCCTTGGCCAAGATCCTGAGATATCTGCAG CAGCTGGGGAATATGCTAAGTTAATGGTTCCAAGCCTTTTTGGTTATGGTCTTTTGCAGTGCCTAAATAGATTCTTACAA ACCCAAAATATTGTATTTCCAATGATGCTCAGCTCAGGAGTGACAACTTTACTACACATTCTTTTTTGTTGGATTATGGT ATTCAAGTCTGGATTAGGGTACCGAGGAGCTGCCATAGCAAATTCTATATCTTACTGGCTGAATGTTACCATACTCACAC TCTATGTCAAGTTTTCTCCTTCATGTAAGAAAACTTGGAATGGATTTTCCAAAGAGGCACTGCACAACATCCCCACATTC CTGAGGCTTGCCATTCCTTCAGCTGCTATGATTTGGTAATTTCATTCTAGCATACTTCAATATAACCTACATATAATAGA CCAATATGTACTTACTGTGTTATTACTTATTAGTTGTTATTTTTCTTAATAATACTCATTCATTTCTTAATAACATCTTA ATACGGTTTCCAATTTTTACTATCATTATTATGGTGAACAGCTTGGAAGTGTGGTCTTTTGAAATGATGGTTCTCCTTTC TGGTCTTCTTTCAAATCCAAAACTGGAAACATCAGTGCTTTCTATCTGGTTGGTTTCATTTAATATTTCGGATGCTTTTC ACTTTTGTTTCATATTTTCATCAACATGTTTTCGGTGACTTGTGGGCTTTTATGCAGCTTGAATACAACAACATCTGTTG TGATGATTCCCTTTGGACTAGCTGCTGCTATAAGGTAAGAATTTCCCTTTAGCAAGCTCACCATTTTATTTAAGCCTACA TCAATCAGACATTCTGTTTCTTCCTAATTTTGTTTTTTTCATTTCCCCCCTTGATTTGGTTTACATTAATGCTTTGCATG ATATTCATGCAGCATCCGGGTCTCGAATGAACTTGGAGCTGGTCATACACGTGCTGCACGTTTAGCAGTGCGTGTTGTCT CAGTCCTAGCCATTTTCGAGGGTATCATAGTTGCGACTGTGTTGATACTAATACGTAATATCTGGGGCTATGCATATAGT AATGAAGTAGAAGTGGTAAAATATGTAGCAACTATGATGCCAATTCTTGCAACTTCCCACTTTTTGGATGCACTCCAGAG CGTTCTTTCAGGTTCTCTATTCCTATTTCCCTTCAATTTCATTTATTGTCTGCATTGGAGCTATGAAGTAGATGATTTAA TACTGCAATCTGAATGGTGTTTGAATTTGATATCTTATTCAACTATTACAAGTGATCTTATTTCTTCACTATGTCAACTA TAATACAGGAACAGCTAGAGGATGTGGTTTGCAGAAAATTGGCGCATTTGTGAATCTGGGGTCATACTATTTAGTTGGAA TTCCATCATCTATTGTGTTAGCTTTTGTATTGCATCTTGGTGGCAAGGTAATAAAATAGTTTACTCATTTGTAGCATAGC TTGAGAGTTTGAGATTAATGGTCAGTTTTACAAAGATTCCGATAAATATTTTATGTAGGGGTTGTGGCTTGGGATCATAT GTGCACTCATTGTTCAACTACTTTCTCTAGTGATCATTACTATACGTACTGATTGGGAGAAACAGGTGAATCCTTACAAT TTTTTCTCTGCAATCTCTTTCATCACATCCTTCATTTTTGTAATGCAGGTACTGACATGTCTTACTTTTCTGACTCCTCA TACAGGCAAAGAAGGCCACTGATAGAATCTATGACTCAATAACACCAGAGCTCTTAACTTCATGAAGTTTCAATATCTCT GCTGCAGATACACACATTCTGCATAAATTGTATTCTATTTGGATGAAGTGCAGTGCTACTAGCACCCTTTCACTCTATAT GGGTCACACTCCAAATTTGTTGGGACCTATATGAATTTTAACCAATAATAGAGGAAGTGTTTAAAATAGAGTGTAACTAT GAGTGTTGGTAGCATTTTTCGGGGCAAAGCAATGAGTTCTTACACTTTAGATAGAGAAGTGTAATCCAATTACACATGAT TGAAAGGATAATATGATCTTGATAATATAAAGGCTTAAATACTCTGTAGGTTCCTGAAATTGTCTACCGTACGAAAATAA GTCCCTGAAATTTTTTTTTTCCGATTCTGAATCCCTAGAATTTTTTTTAATCAGAATAAGTCCCTACTCGTGTTTCCAGC CTATGTGGCACAATTTTTGCTGAGTCATTTATTCCACGTGGCTTTTCTATTTTTTTTAAATCCACATGGATTAAAAAAAT AAAATTAAACATTTAAATTTAAAATTAAAATCATTTTAGGGATTTAGGGTTAATTAGATTTAGGGTTAATTAGGTTAATA AGATTTTAATTTTAAATTTAAACATTTAGGGATTTAGGAATTTAGGGTTAATTAGGTTAATAAAATTTTAATTTTAAATT TAAACATTTAAATTTAAAATTAAAATCTTTTTAGGGATTTAGGGTTAATTAGATTTAGGGTTAATT
CDS sequence (LotjaGi2g1v0200400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGGGCAACAGAAAGAACAGAAGTTCTTGAAGAAGTGAAGAAACAGTTATGGCTAGCAGGACCTTTAATAGCTGT GGGCCTCCTAAATTATTTCCTAAATGTTATATCTGTCATGTTTGTTGGACATCTCAGTGAGTTGGATCTCTCAGGTGCTT CCATGGCCACTTCTTTTGCATCAGTGACAGGTTTCACTTTATTGACAGGAATGGCAAGTGCCTTGGACACCTTATGTGGC CAGTCATATGGAGCAAAGCAGTATCAGAATTTAGGCATATACATGCAGAGGGCCATGGTCGTTCTTACAGTTGTAAGCAT TCCAGTAGCAGTTATTTGGGCAAATACAAGATTCATTCTTGTTTTCCTTGGCCAAGATCCTGAGATATCTGCAGCAGCTG GGGAATATGCTAAGTTAATGGTTCCAAGCCTTTTTGGTTATGGTCTTTTGCAGTGCCTAAATAGATTCTTACAAACCCAA AATATTGTATTTCCAATGATGCTCAGCTCAGGAGTGACAACTTTACTACACATTCTTTTTTGTTGGATTATGGTATTCAA GTCTGGATTAGGGTACCGAGGAGCTGCCATAGCAAATTCTATATCTTACTGGCTGAATGTTACCATACTCACACTCTATG TCAAGTTTTCTCCTTCATGTAAGAAAACTTGGAATGGATTTTCCAAAGAGGCACTGCACAACATCCCCACATTCCTGAGG CTTGCCATTCCTTCAGCTGCTATGATTTGCTTGGAAGTGTGGTCTTTTGAAATGATGGTTCTCCTTTCTGGTCTTCTTTC AAATCCAAAACTGGAAACATCAGTGCTTTCTATCTGGTTGGTTTCATTTAATATTTCGGATGCTTTTCACTTTTGTTTCA TATTTTCATCAACATGTTTTCGGTGA
Protein sequence (LotjaGi2g1v0200400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRATERTEVLEEVKKQLWLAGPLIAVGLLNYFLNVISVMFVGHLSELDLSGASMATSFASVTGFTLLTGMASALDTLCG QSYGAKQYQNLGIYMQRAMVVLTVVSIPVAVIWANTRFILVFLGQDPEISAAAGEYAKLMVPSLFGYGLLQCLNRFLQTQ NIVFPMMLSSGVTTLLHILFCWIMVFKSGLGYRGAAIANSISYWLNVTILTLYVKFSPSCKKTWNGFSKEALHNIPTFLR LAIPSAAMICLEVWSFEMMVLLSGLLSNPKLETSVLSIWLVSFNISDAFHFCFIFSSTCFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 4 | 280 | 277 | 4.3E-142 | – | |
| PANTHER | 4 | 280 | 277 | 4.3E-142 | – | |
| CDD | 13 | 278 | 266 | 9.26907E-109 | – | |
| Phobius | 20 | 43 | 24 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| TIGRFAM | 23 | 271 | 249 | 1.3E-58 | ||
| Pfam | 23 | 183 | 161 | 3.2E-38 | ||
| Phobius | 44 | 54 | 11 | - | – | |
| Phobius | 55 | 78 | 24 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 79 | 98 | 20 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 99 | 123 | 25 | - | – | |
| Phobius | 124 | 128 | 5 | - | – | |
| Phobius | 129 | 150 | 22 | - | – | |
| TMHMM | 131 | 150 | 20 | - | – | |
| Phobius | 151 | 161 | 11 | - | – | |
| Phobius | 162 | 185 | 24 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 186 | 196 | 11 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 197 | 216 | 20 | - | – | |
| Phobius | 217 | 236 | 20 | - | – | |
| Phobius | 237 | 256 | 20 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 257 | 275 | 19 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 276 | 295 | 20 | - | – | |
| Phobius | 296 | 301 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Antiporter activity | Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Xenobiotic transmembrane transporter activity | Enables the directed movement of a xenobiotic, a compound foreign to living organisms, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0200400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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