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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0201100 |
| Transcript ID | LotjaGi2g1v0201100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT3G18200.2 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200; TrEMBL-Plants: tr|A0A151TEQ7|A0A151TEQ7_CAJCA WAT1-related protein; Found in the gene: LotjaGi2g1v0201100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63973087..63975529) extracted from Lotus japonicus Gifu genome v1.2.
GTTACACAAGAATGGGAGCTATGGTGACAGAGAAAGTGAAGCTTCTTGTAGCATTACTCACTTTGCAGTTATGCTTTGCA GGATTTCACATTGTCTCTAGACTTGCACTAAACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAACTTAATTGC CTTGCTTTTGTTGAGCCCACTTGCTTACTTATTAGAAAAGTGAGTTTTCAGAAAAAACTTGTTCACTTTTATCTTTTTTT ATAGTGCTTGTTTGAGTACAATGTGGAAAACCACAATGAAGTAAAAATCATAGTCGACACTCACAAAAGCAAGAGAAGTT GCTTCTGTCGACTGTAATTTTGACTTACCGTGATTTTCCACCTTGTATCAAAACATGCACGCATTCTTTCTGTTATTTTC ATTGAATTAATTTTTTTTCATGCTAAATATATTTTAACATGGACCAATGTCAATATCTTTGCATTCAGGAATCAAAGACC ACCCCTTACCTTATCTTTACTGTTTCAGTTCTTCCTATTAGCACTACTGGGGTAAGACTAAGAAACTAAATCATATAAGC TTCACATTTCCACACTCTCATTTCCTTCTTACTTGTTCTAATATTTTCTTCTTTTCTGTATTTTTCATTGGCATATTAGG ATCACTGCAACACAAGGATTTTACTTGTTGGGACTGTATTATGCTTCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGT TCCTGCAATTACTTTTGTCTTGGCCTCAGCTTTAAGGTAAATTAATCATGTCCCTTTGTAGCATTCTTTACCATTTTCTG TTGCATTCTCTTTTACAACTTGATGAATTCATTCACATCTCTGCCAGGCTTGAGGAAGCCAACATTGCAAGGAGAGATGG ATTGGCAAAGGTTCTAGGAACCATTGCTAGTGTGGGGGGTGCCACTGTAATCACTCTTTACAAAGGTCCTCCTCTTCTTC ACATGCAAACACAAGGAGTCACCTTAGAAGTAGATCAGTCTTCTACAAAAAATGTGCAAAATTGGACATGGGGTTGCATA TACTTGCTTGGACATTGTTTATCATGGGCTGGCTGGATGGTTTTTCAGGTCTGTGACTGATCATGGTCCGACTATTAAAC TTTGAACCGATGTCTTGACCGGATCCAGTCTGGTTCTGAGAACACTTATAAACTGAAATACCACTTGGTTTATTCAATAT TATTTTCTTTTAACCTGAATTGTGAAGTAAAAAAATTTTGCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCC TCACTTCCTTTACATGCTTCTTTGGATTGATCCAATTCTTGGTCATAGCCGCCTTCACAGAAACTGATCTTGAGAAGTGG AAGATAAAATCATCAGAGGAGCTTTTCACCATACTATATGCTGTAATACTCATCTCCTCAATACCCAAATATCATACTAT TACAAATTATTTATAAAATCACACCCAGAGCATGTTTGAATGCAGAACAAAAAGCACTTATATACAATGCATTTTTTAGT AGAGAAGCTTTAATAAATGCTCTTTGGTGCGCAACCAAACGGGCTCTAGTCCCTAGTAGTGTCAATTTTAAAGTGAATTG AATTCACTATTGTGTGATGATTCAGGGAATTGTAGCTTCCGGCTTTGTCATAGCTCTCCAAACATGGTGTATTCAAAAGG GTGGCCCTGTGTTTGTTGCTGTCTTCCAGCCAATACAAACTGTTCTAGTTGCTGTCATGGCAGCCCTTATTCTTGGTGAT CAATTATATTTTGGAGGGTATGCTGAAAATTTACAAGCCATTAATTACATATTTTCTCTATCAATTTTATACTTGTGAAG GAAAAGAATGTACTCAATTTTAAAAGTACATGATTATTCAACTGAGTCAGTCACTTTTTGTCACAGGGTTATTGGTGCAA TTCTGATTGTGTTTGGTCTATACTTAGTCCTATGGGGCAAAACAAATGAAAAGAAAGTGAGTGAGACATCATTAACAAAG CCATTGCTAAATGCAGAGGAGGAAAATAAAGCTACTGATTTAGCTCCCAAGGACATACCTTGACATGTGTATCTGTTGAC AGAGACAGAAGAATATATATAGTTCCGGTAAAAGTATTTAACAACCAGTTAACCACAGATATATGGTTCTGGTTAACAGC ATCTCAGGGTTGTTACACATTGATTTTCCTGTAATTTATTCAGATATAGTATTAGAGTCAAGGGCTTAAGGCTATGCTGA ATTAAGGCCTGCTTATGTTTTTTATTTTATTTTTTTATCATAGGAGCAAGTTCTTCAATTACACTTGATTACAAGGTCAA GTTTGGTCGGTCGGTTGGTTGTGTTATGTCAAATGGTACATGCAACACTCCATCACCATGTGATGTACATTACATTGACT CCATATTTTTATATATATTAATTAAAACCTTTGCTGCTTGAAT
CDS sequence (LotjaGi2g1v0201100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTATGGTGACAGAGAAAGTGAAGCTTCTTGTAGCATTACTCACTTTGCAGTTATGCTTTGCAGGATTTCACAT TGTCTCTAGACTTGCACTAAACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAACTTAATTGCCTTGCTTTTGT TGAGCCCACTTGCTTACTTATTAGAAAAGAATCAAAGACCACCCCTTACCTTATCTTTACTGTTTCAGTTCTTCCTATTA GCACTACTGGGGATCACTGCAACACAAGGATTTTACTTGTTGGGACTGTATTATGCTTCTCCAACTTTTGCTTCTGCAAT GCAAAACTCAGTTCCTGCAATTACTTTTGTCTTGGCCTCAGCTTTAAGGCTTGAGGAAGCCAACATTGCAAGGAGAGATG GATTGGCAAAGGTTCTAGGAACCATTGCTAGTGTGGGGGGTGCCACTGTAATCACTCTTTACAAAGGTCCTCCTCTTCTT CACATGCAAACACAAGGAGTCACCTTAGAAGTAGATCAGTCTTCTACAAAAAATGTGCAAAATTGGACATGGGGTTGCAT ATACTTGCTTGGACATTGTTTATCATGGGCTGGCTGGATGGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAAC TAACCCTCACTTCCTTTACATGCTTCTTTGGATTGATCCAATTCTTGGTCATAGCCGCCTTCACAGAAACTGATCTTGAG AAGTGGAAGATAAAATCATCAGAGGAGCTTTTCACCATACTATATGCTGGAATTGTAGCTTCCGGCTTTGTCATAGCTCT CCAAACATGGTGTATTCAAAAGGGTGGCCCTGTGTTTGTTGCTGTCTTCCAGCCAATACAAACTGTTCTAGTTGCTGTCA TGGCAGCCCTTATTCTTGGTGATCAATTATATTTTGGAGGGGTTATTGGTGCAATTCTGATTGTGTTTGGTCTATACTTA GTCCTATGGGGCAAAACAAATGAAAAGAAAGTGAGTGAGACATCATTAACAAAGCCATTGCTAAATGCAGAGGAGGAAAA TAAAGCTACTGATTTAGCTCCCAAGGACATACCTTGA
Protein sequence (LotjaGi2g1v0201100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAMVTEKVKLLVALLTLQLCFAGFHIVSRLALNIGVSKVVYPVYRNLIALLLLSPLAYLLEKNQRPPLTLSLLFQFFLL ALLGITATQGFYLLGLYYASPTFASAMQNSVPAITFVLASALRLEEANIARRDGLAKVLGTIASVGGATVITLYKGPPLL HMQTQGVTLEVDQSSTKNVQNWTWGCIYLLGHCLSWAGWMVFQAPVVKKYPAKLTLTSFTCFFGLIQFLVIAAFTETDLE KWKIKSSEELFTILYAGIVASGFVIALQTWCIQKGGPVFVAVFQPIQTVLVAVMAALILGDQLYFGGVIGAILIVFGLYL VLWGKTNEKKVSETSLTKPLLNAEEENKATDLAPKDIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 7 | 337 | 331 | 1.8E-181 | ||
| PANTHER | 7 | 337 | 331 | 1.8E-181 | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Pfam | 14 | 152 | 139 | 8.0E-10 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 23 | 34 | 12 | - | – | |
| Phobius | 35 | 43 | 9 | - | – | |
| Phobius | 44 | 61 | 18 | - | – | |
| TMHMM | 44 | 61 | 18 | - | – | |
| SUPERFAMILY | 45 | 153 | 109 | 8.76E-7 | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| Phobius | 73 | 97 | 25 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 98 | 102 | 5 | - | – | |
| Phobius | 103 | 122 | 20 | - | – | |
| Phobius | 123 | 133 | 11 | - | – | |
| Phobius | 134 | 154 | 21 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 155 | 181 | 27 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 182 | 202 | 21 | - | – | |
| Pfam | 184 | 322 | 139 | 1.8E-19 | ||
| Phobius | 203 | 213 | 11 | - | – | |
| Phobius | 214 | 233 | 20 | - | – | |
| TMHMM | 214 | 235 | 22 | - | – | |
| Phobius | 234 | 252 | 19 | - | – | |
| SUPERFAMILY | 242 | 326 | 85 | 1.05E-9 | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 253 | 271 | 19 | - | – | |
| Phobius | 272 | 277 | 6 | - | – | |
| Phobius | 278 | 298 | 21 | - | – | |
| TMHMM | 279 | 298 | 20 | - | – | |
| Phobius | 299 | 303 | 5 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| Phobius | 304 | 322 | 19 | - | – | |
| Phobius | 323 | 358 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0201100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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