Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0201100 |
| Transcript ID | LotjaGi2g1v0201100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT3G18200.2 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200; TrEMBL-Plants: tr|A0A151TEQ7|A0A151TEQ7_CAJCA WAT1-related protein; Found in the gene: LotjaGi2g1v0201100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63973088..63975531) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTACACAAGAATGGGAGCTATGGTGACAGAGAAAGTGAAGCTTCTTGTAGCATTACTCACTTTGCAGTTATGCTTTG CAGGATTTCACATTGTCTCTAGACTTGCACTAAACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAACTTAATT GCCTTGCTTTTGTTGAGCCCACTTGCTTACTTATTAGAAAAGTGAGTTTTCAGAAAAAACTTGTTCACTTTTATCTTTTT TTATAGTGCTTGTTTGAGTACAATGTGGAAAACCACAATGAAGTAAAAATCATAGTCGACACTCACAAAAGCAAGAGAAG TTGCTTCTGTCGACTGTAATTTTGACTTACCGTGATTTTCCACCTTGTATCAAAACATGCACGCATTCTTTCTGTTATTT TCATTGAATTAATTTTTTTTCATGCTAAATATATTTTAACATGGACCAATGTCAATATCTTTGCATTCAGGAATCAAAGA CCACCCCTTACCTTATCTTTACTGTTTCAGTTCTTCCTATTAGCACTACTGGGGTAAGACTAAGAAACTAAATCATATAA GCTTCACATTTCCACACTCTCATTTCCTTCTTACTTGTTCTAATATTTTCTTCTTTTCTGTATTTTTCATTGGCATATTA GGATCACTGCAACACAAGGATTTTACTTGTTGGGACTGTATTATGCTTCTCCAACTTTTGCTTCTGCAATGCAAAACTCA GTTCCTGCAATTACTTTTGTCTTGGCCTCAGCTTTAAGGTAAATTAATCATGTCCCTTTGTAGCATTCTTTACCATTTTC TGTTGCATTCTCTTTTACAACTTGATGAATTCATTCACATCTCTGCCAGGCTTGAGGAAGCCAACATTGCAAGGAGAGAT GGATTGGCAAAGGTTCTAGGAACCATTGCTAGTGTGGGGGGTGCCACTGTAATCACTCTTTACAAAGGTCCTCCTCTTCT TCACATGCAAACACAAGGAGTCACCTTAGAAGTAGATCAGTCTTCTACAAAAAATGTGCAAAATTGGACATGGGGTTGCA TATACTTGCTTGGACATTGTTTATCATGGGCTGGCTGGATGGTTTTTCAGGTCTGTGACTGATCATGGTCCGACTATTAA ACTTTGAACCGATGTCTTGACCGGATCCAGTCTGGTTCTGAGAACACTTATAAACTGAAATACCACTTGGTTTATTCAAT ATTATTTTCTTTTAACCTGAATTGTGAAGTAAAAAAATTTTGCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAAC CCTCACTTCCTTTACATGCTTCTTTGGATTGATCCAATTCTTGGTCATAGCCGCCTTCACAGAAACTGATCTTGAGAAGT GGAAGATAAAATCATCAGAGGAGCTTTTCACCATACTATATGCTGTAATACTCATCTCCTCAATACCCAAATATCATACT ATTACAAATTATTTATAAAATCACACCCAGAGCATGTTTGAATGCAGAACAAAAAGCACTTATATACAATGCATTTTTTA GTAGAGAAGCTTTAATAAATGCTCTTTGGTGCGCAACCAAACGGGCTCTAGTCCCTAGTAGTGTCAATTTTAAAGTGAAT TGAATTCACTATTGTGTGATGATTCAGGGAATTGTAGCTTCCGGCTTTGTCATAGCTCTCCAAACATGGTGTATTCAAAA GGGTGGCCCTGTGTTTGTTGCTGTCTTCCAGCCAATACAAACTGTTCTAGTTGCTGTCATGGCAGCCCTTATTCTTGGTG ATCAATTATATTTTGGAGGGTATGCTGAAAATTTACAAGCCATTAATTACATATTTTCTCTATCAATTTTATACTTGTGA AGGAAAAGAATGTACTCAATTTTAAAAGTACATGATTATTCAACTGAGTCAGTCACTTTTTGTCACAGGGTTATTGGTGC AATTCTGATTGTGTTTGGTCTATACTTAGTCCTATGGGGCAAAACAAATGAAAAGAAAGTGAGTGAGACATCATTAACAA AGCCATTGCTAAATGCAGAGGAGGAAAATAAAGCTACTGATTTAGCTCCCAAGGACATACCTTGACATGTGTATCTGTTG ACAGAGACAGAAGAATATATATAGTTCCGGTAAAAGTATTTAACAACCAGTTAACCACAGATATATGGTTCTGGTTAACA GCATCTCAGGGTTGTTACACATTGATTTTCCTGTAATTTATTCAGATATAGTATTAGAGTCAAGGGCTTAAGGCTATGCT GAATTAAGGCCTGCTTATGTTTTTTATTTTATTTTTTTATCATAGGAGCAAGTTCTTCAATTACACTTGATTACAAGGTC AAGTTTGGTCGGTCGGTTGGTTGTGTTATGTCAAATGGTACATGCAACACTCCATCACCATGTGATGTACATTACATTGA CTCCATATTTTTATATATATTAATTAAAACCTTTGCTGCTTGAA
CDS sequence (LotjaGi2g1v0201100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTATGGTGACAGAGAAAGTGAAGCTTCTTGTAGCATTACTCACTTTGCAGTTATGCTTTGCAGGATTTCACAT TGTCTCTAGACTTGCACTAAACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAACTTAATTGCCTTGCTTTTGT TGAGCCCACTTGCTTACTTATTAGAAAAGAATCAAAGACCACCCCTTACCTTATCTTTACTGTTTCAGTTCTTCCTATTA GCACTACTGGGGATCACTGCAACACAAGGATTTTACTTGTTGGGACTGTATTATGCTTCTCCAACTTTTGCTTCTGCAAT GCAAAACTCAGTTCCTGCAATTACTTTTGTCTTGGCCTCAGCTTTAAGGCTTGAGGAAGCCAACATTGCAAGGAGAGATG GATTGGCAAAGGTTCTAGGAACCATTGCTAGTGTGGGGGGTGCCACTGTAATCACTCTTTACAAAGGTCCTCCTCTTCTT CACATGCAAACACAAGGAGTCACCTTAGAAGTAGATCAGTCTTCTACAAAAAATGTGCAAAATTGGACATGGGGTTGCAT ATACTTGCTTGGACATTGTTTATCATGGGCTGGCTGGATGGTTTTTCAGGTCTGTGACTGA
Protein sequence (LotjaGi2g1v0201100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAMVTEKVKLLVALLTLQLCFAGFHIVSRLALNIGVSKVVYPVYRNLIALLLLSPLAYLLEKNQRPPLTLSLLFQFFLL ALLGITATQGFYLLGLYYASPTFASAMQNSVPAITFVLASALRLEEANIARRDGLAKVLGTIASVGGATVITLYKGPPLL HMQTQGVTLEVDQSSTKNVQNWTWGCIYLLGHCLSWAGWMVFQVCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 7 | 204 | 198 | 4.3E-100 | ||
| PANTHER | 7 | 204 | 198 | 4.3E-100 | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Pfam | 14 | 152 | 139 | 3.6E-10 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 23 | 34 | 12 | - | – | |
| Phobius | 35 | 43 | 9 | - | – | |
| TMHMM | 44 | 61 | 18 | - | – | |
| Phobius | 44 | 61 | 18 | - | – | |
| SUPERFAMILY | 45 | 153 | 109 | 2.48E-7 | – | |
| Phobius | 62 | 72 | 11 | - | – | |
| Phobius | 73 | 97 | 25 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 98 | 102 | 5 | - | – | |
| Phobius | 103 | 122 | 20 | - | – | |
| Phobius | 123 | 133 | 11 | - | – | |
| Phobius | 134 | 154 | 21 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 155 | 181 | 27 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 182 | 202 | 21 | - | – | |
| Phobius | 203 | 206 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0201100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…