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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0206200 |
| Transcript ID | LotjaGi2g1v0206200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 domain-containing family protein; TAIR: AT3G18370.1 C2 domain-containing protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|A0A1J7GSW8|A0A1J7GSW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0206200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64975447..64981628) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTAGCAAGAAAAGGGTGATTTCCTTTGTGAGTAGTATTGAAGATGCTGCTGTGGACTTCTTCAATCATCTCTTGCA GGAGAAGCCTCAGATTTCATTCTTCATTCCACTGATTCTGATTGCTTGGGTTGTTGAGAGATGGGTCTTCCCTTTCTCCA CTTGGGTTCCTATTGCACTTGCTGTGTGGACAACAATACAGGTAAATTACCTTACCCTCTTTCCCCTTGCTCTGTTATCT TCTTATCTTCACCATAGTTTATCCCAAAATTGTTCCTCAAATTTTTATTTGGTGAGGATGTTCTTCCCTGATCAATTTAG TTTCAAATTTAAATGCATAAATTATGTATGGATGTTGTTGTTGGAGATAATTTTATATAATGTTCCCATTGCTTATGTAA TTTGTTAGTATAAAATGTTACCTGTAGATATCTTTCTTTGTCAGATCTCTAAGTTGGTTGTGATCATGTGATTTTGGAAC TCTTAATTACCAATTGAAAGCATGAGTGTTTAATTGAATAAAATAAGACCAGATCAGTGGTATTTGAGCTTGAGCTCCCT ATGCTTATATGTGTACAATTTTAATAAATATGTGTACTTTACTTCACATTCTGAGTTAATGGTTTTTGGTAGTTGCGTAT GATATAAGCTGTTAGTGTGAGATACTGCTTTTTCTTTTTCAGTATGGGAGATATCAACGCAAGCTACTAGTGGAGGATTT GGATAAGAAATGGAAGCGAATCATACTGAATGTCTCGGTACATTCCTTATCTTTTCTCCCTTTACATTCCTAATGTGCTT TATGATGTTGACTTCAACTTTGTGTTCAAATAATATAGCCCATCACACCATTGGAGCACTGTGAGTGGCTTAATAAGTTG TTGACAGAAATCTGGTCCAACTATTTTAACCAGAAGCTCTCAAACAGGTTATCAGATATAGTTGAGGTGAAATTTCACAG ACTTTCGCAGTTACTACATTGATTTTTTGTTTTGTTTTACATTTTCATTCCAATCTGAAATTGGAATTTGGCTTCTATTT ATTGTTGGACTGAAATAAATCACTTAGGTTATACTTCTTCGTTGTTTCCACTTCTTTTTTGCAACTTTCAAAATGTTTTT CCAAAAATAGGCATACAAAATTCGTCACTTACATTCATCTATTTCTTAATTATTTTACGTACTTCCAAGGAAATTAATTA ATAACCGAGGCAAATGACATAACAAGAAATTAGACGAAATTTTCAATAAAAATGAGAACATTAGTTCTAATTCTTAATTT GTGTCAAGTTTAAGGAATAGAGGGAGTATTTTGATAGATGAACTAATTAAACTTTTCTTTCTTTTGTGTCTCTAGAAACG TTTAAAGCTCCGGAAACCAAGATTTCTAGTAAGTAACTCTTATTTTCTTCCTTGACAGAGTTGATAGTTTCAAATATTTG TTCGATGTGTAATGAACTAGAATCCTTCTGTAGGATAGAGTTGAGCTGCAGGGGTTTTCACTTGGATCATGCCCTCCAAG CTTGGCTTTGCAAGGGATGCGGTGGTCAACTATCGGTGATCAGGTATTAGTTTTCTCCACATTTCAAACATCACTAGTAA ATAGATTTTCTAGATTTTTAATTAGGAAGATTCATTCTCCCCTTCATTTGTACTGTTTTTTATGAGCAATACAGGAAACA GATTCCGGTCTAAATCTGCAATTTTTTTTTTGTTGCTTGATGTGATGTTAATACCAATACTACAGCCACTATGAGCTTTG GCACTTCCACTATTTTTATTGCCTTTTTCTCTTCCACTGTCAAGGCTTCTTCTATTGTGTGATCTTTATGTTGCTGACAT CAGCAAGTGCACAGGAAAATTATATGCACAGTTTGAAAACTAAATTTCAATTTTATTTAGAAGTAAATTGTTAAAGATCA TAATAATAGGAGTCTATGAATCTTCTTTACATCTCACTCAATGCCACCTAGGTAGTACATTTGACTTTCATATTTCTATT ACGCCTGCCTCTATCCTTTTAGCATTGACATATTAACAAATATCTGAGGTTTTGATAAAGCACTCTGATGGTATCTTACA GCGAGTCATGCAACTGGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCGAAGCCATTGA TTGGAACTGCTCGGATTGTGATCAACAGTCTTCATATCAAGGGTGATGTATGTAACACAACTTTTTTTGTTCATTTTTTT AACATAAAAAAGCTTTATAAACTAGAAAGTAGGATATAATATGAGAACAAAGTTGGTTTGGTTTTTGAAGCTTACATATA ATTATGACTTTCTTCTTTGAGAAGTATCAAACATGATAACCAGCTCACCACATTTTTTCTTTTAAACAATGTCTCCATTA GATTCTACTGTCATTGGGTCTCGGGCCAGTCCATTGCTTTTCATGCATTATTGCGAAACTGGTTTGGTGTTTTTCTTTAT ATTAATCTAATCATCTTTCATATTCATTTTTGCAGCTCCTTATTACACCGATTCTAGATGGAAAAGCACTCCTATATTCA TTTGTATCAACACCTGAGGTGCGAGTAGGAATTGCCTTTGGAAGCGGTGGGAGCCAGTCACTTCCTGCCACTGAGTGGCC TGGTGTTTCTTCTTGGCTGGTGGGTTCCCACTAAGTTTAATGTTATGTTTGTAGAAAAGTAACCAAATTGCATTTGTTTG TGATGAGCGGCATAGCTATCTTACATTTATGGTACTGTTGGAAAAAGATACATACACTTTTGGCTCAGCTACAACTTTGG AAATCACATTATGCACTGCAGATATCTTGCTTATGCAGCGTTAACTGATTTCAGTCTGATATTAAGATTTATTTCCAGAT GCATATAGGTTCGGTATAAGGACAGTTCATATAACTCTATGTAAGAACAGAACATGAACTAGAAAATTCTTTGTATTTTC AGTTAATTTGATTTTTAGGAATTCATAATATAAAGGTAGTTTGACTCTCTATTTTCAGATGAAAAGAAGTCTCTCAGAAT TTTGGCTAACTTTCTATTTATTTTTCCTGAGCACTTCCTATTTTTCATATTAATTGAAAGTTTACATATTATGCAGGAAA AACTTTTTGCTGACACCTTGGTTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCACTTTGCCTGCAGTTGATTTAAGG AAAAAGGCTGTTGGAGGAGTTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTCCTTCAAAGCACTGAG ATATTCAGAAGACAATTTTGATGACAAGGACCTACAGACATTTGTAGAAGTAGAAATTGAGGAATTAACCAGAAGAACAG ATGTCAGACTTGGTTCAACCCCTAGATGGGACGCACCGTTTAATATGGTTTTGCATGATAATACAGGAACTCTTCGCTTC AATCTTTATGAGAGTCTTCCTAACAGTGTGAAGTGTGACTATCTAGCAAGCTGTGAAGTCAAGGTAAGGCCGTCAATGCT CTCCTTTGCAACCTTTCTTTTTTGGAAGTACTATGCTAAGATAATGTTATGTCTTTGCTCAGTTGAGGCATGTTGAAGAC GATTCGACAATAATGTGGGCAGTTGGACCTGATTCTGGGGTCATAGCAAAGCAAGCTCTGTTTTGTGGAGATGAAATTGA AATGGTTGTCCCATTTGAGGGGGCCAACTCTGGAGAGGTACAGTATTTTATGATTATGTAATAATTAGTCCCTCCTGCTT TTCTTGCTTGTAAATCATGATACACAGTTGACACTTTGGTTATCTTACCGTGGCATTATTTTATCCTCAACGAAGATAAC ATGGTTGTTCTTCATTCCTTATCTTAACAAGCAACTTGGTTAAAATATGATGAAGCATGAGTCTGAATATTATTGCATAA CTTCAATATTTATTCTTGATGTATGTCAAAAGGAACATGCTCATATCCTGAATCATGTTCGTTGATTTCTGAAGCTGAAA CATTGGATGATATAATTTGAAATGAGGTTATAGTTTCATATCAATTGTCTCTTTCTGGTTTGATGCTCTTAACTGCACTA GCACTCTTTCATTCTCTGCTTGTTGAGTTTGTTTGGTCAAAATTGTTCTTCGTTCTTTACTAAAAATCTAAAACTACATT TCAATATACCATAATTCTTATAATGGCATAGTTTTCTGTTTTTATCTTCTGACTTGTTTTTAATCTCTAGTCATGACTTG AAAGTTGAAAATGGATGCATGATTTACCTTTCTGAATGAAAAAAAATTAGTGTTGAATCTGACATATTGACCATTTATTC ATTCTACCTCTTGTCTTCATTTTATAGTTGAAGGTGAGCGTCGTAGTAAAAGAATGGCAATTTTCTGATGGTTCACATAC CATGAACAATCTCCGAGCTAGCTCTCAGCAGTCACTTAATGGATCATCAAATCTTCCATTAAGAACTGGACGGAAACTTT ACGTAACTGTTGTGGAAGGCAAGGATCTTGCTGCAAAAGAAAAATCTGGAAAATTTGATCCATACTTTAAATTGCAGTAT GGAAAGGTGAGTGACACTGAGTGTGTGTGAGATTCTGACTGTACTAAGGTTGTGAATTGGAAATTATGCTTTATCTAATT CTAATTCTGGTTTAAATAATCTTTTCAGGTTGTCCAGAGGACAAAGACTTCTCATACTCCAAATCCTTCCTGGAATCAAA TGTTTGAATTTGATGAGATTGGTGGCGGTGAATACTTAAAAGTTAAAGGCTTTAGTGAAGAAACTTTTGGAGATGAGAAC ATTGGCAGTGCACAAGTAAATTTGGAAGGGCTGGTTGATGGCTCGGCCAGGGACGTGTGGATCCCTCTTGAAAGAGTGCG TTCTGGAGAATTAAGACTTCAAGTAGAAGCAGTTAGGGTGGATGATCAAGAAGGATCAACGGTGCGTATTTGCAGTAGGA AATAAGTGGTTCTTTCAATCATTTAGCTACAAGATGTAAAATTGGATACGAAAGGCTAAGACACATTGTATTTGCATATC ATCACTTACGTTATTCATTGCTGATTTTAACCTCTTGGATATTCATTCTGACGCGCTTCACACCTTTGAAATGGCCAGGG TTCAGGTAATGGTTGGATAGAACTTGTTTTGATTGAAGGAAGGGATCTTGTTGCCGCCGATCTCAGAGGCACGAGTGATC CATATGTGAGGGTACACTATGGAAACATAAAGAAAAAGACAAAGGTTGGAATACTTCATCCTTGAATCAAGTGATCCATA TAACCGACGTAACTTTGTTGGAAAGACTTTTGTTATTGTCGTTGTTGTAAGCTAATTTACTTATTTTCTGAAGGGAACTC TCTAGACTTTTCATTATACCCATTTTTGTTCTTCACAATTACATATTTCCTGTACAACGCCATGTTGTCATTGTTTCAAT CTTGCAAAAGTCAAGTACTTAATTTTAAGTGTGGCTTTGTCTGGCAGATTATACATAAAACACTTAACCCTCAATGGAAC CAGACCCTTGAGTTCCCTGATGATGGAAGTCCCCTGGTACTTTATGTCAAGGACCACAACGCGTTACTACCGACATCAAG TATAGGGGAATGCGTTGTAGAATATCAAAGGTTGCCCCCGAACCAGATGGCTGACAAGTGGATACCTCTCCAGGGGGTGA AAAAGGGTGAGATTCACATCCAAATTACTAGAAAAGTTCCAGAGGTGCAGAAGAGGAAGAGTATAGACTCTGAACCTTCC TTGGGTAAATTACACCAAATTCCTAGCCAGGTGAGATCTTCATAGATGTTTCACAACACCTCTCTTTGTTATATCGTATG AAGTAATGATTATGTTAATTAATTGCAGTGCACATACTTTTTTTATTTGATGTTAATACCATTCTCATTTTCATTTTGTG CTGTTGTTCTAACATGGTGCAAATTGAACTTTATCAGATAAAAGAGATGATGATCAAGTTCAGGTCATTAATAGAGGATG AAAATCTTGAAGGACTTTCTACAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGAAGGGTACATTGTCCAGTTG GAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCAAAGAGATCATTAATTCTTCTCCTTCTCAGAGCAG AAGATCTTCTGAAAGCCCTTAG
CDS sequence (LotjaGi2g1v0206200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGCAAGAAAAGGGTGATTTCCTTTGTGAGTAGTATTGAAGATGCTGCTGTGGACTTCTTCAATCATCTCTTGCA GGAGAAGCCTCAGATTTCATTCTTCATTCCACTGATTCTGATTGCTTGGGTTGTTGAGAGATGGGTCTTCCCTTTCTCCA CTTGGGTTCCTATTGCACTTGCTGTGTGGACAACAATACAGTATGGGAGATATCAACGCAAGCTACTAGTGGAGGATTTG GATAAGAAATGGAAGCGAATCATACTGAATGTCTCGCCCATCACACCATTGGAGCACTGTGAGTGGCTTAATAAGTTGTT GACAGAAATCTGGTCCAACTATTTTAACCAGAAGCTCTCAAACAGGTTATCAGATATAGTTGAGAAACGTTTAAAGCTCC GGAAACCAAGATTTCTAGATAGAGTTGAGCTGCAGGGGTTTTCACTTGGATCATGCCCTCCAAGCTTGGCTTTGCAAGGG ATGCGGTGGTCAACTATCGGTGATCAGCGAGTCATGCAACTGGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGTT GCTTGCTAAGCTTGCGAAGCCATTGATTGGAACTGCTCGGATTGTGATCAACAGTCTTCATATCAAGGGTGATCTCCTTA TTACACCGATTCTAGATGGAAAAGCACTCCTATATTCATTTGTATCAACACCTGAGGTGCGAGTAGGAATTGCCTTTGGA AGCGGTGGGAGCCAGTCACTTCCTGCCACTGAGTGGCCTGGTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCTT GGTTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCACTTTGCCTGCAGTTGATTTAAGGAAAAAGGCTGTTGGAGGAG TTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTCCTTCAAAGCACTGAGATATTCAGAAGACAATTTT GATGACAAGGACCTACAGACATTTGTAGAAGTAGAAATTGAGGAATTAACCAGAAGAACAGATGTCAGACTTGGTTCAAC CCCTAGATGGGACGCACCGTTTAATATGGTTTTGCATGATAATACAGGAACTCTTCGCTTCAATCTTTATGAGAGTCTTC CTAACAGTGTGAAGTGTGACTATCTAGCAAGCTGTGAAGTCAAGTTGAGGCATGTTGAAGACGATTCGACAATAATGTGG GCAGTTGGACCTGATTCTGGGGTCATAGCAAAGCAAGCTCTGTTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGA GGGGGCCAACTCTGGAGAGTTGAAGGTGAGCGTCGTAGTAAAAGAATGGCAATTTTCTGATGGTTCACATACCATGAACA ATCTCCGAGCTAGCTCTCAGCAGTCACTTAATGGATCATCAAATCTTCCATTAAGAACTGGACGGAAACTTTACGTAACT GTTGTGGAAGGCAAGGATCTTGCTGCAAAAGAAAAATCTGGAAAATTTGATCCATACTTTAAATTGCAGTATGGAAAGGT TGTCCAGAGGACAAAGACTTCTCATACTCCAAATCCTTCCTGGAATCAAATGTTTGAATTTGATGAGATTGGTGGCGGTG AATACTTAAAAGTTAAAGGCTTTAGTGAAGAAACTTTTGGAGATGAGAACATTGGCAGTGCACAAGTAAATTTGGAAGGG CTGGTTGATGGCTCGGCCAGGGACGTGTGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAGTAGAAGC AGTTAGGGTGGATGATCAAGAAGGATCAACGGAAATGGCCAGGGTTCAGGTAATGGTTGGATAG
Protein sequence (LotjaGi2g1v0206200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKKRVISFVSSIEDAAVDFFNHLLQEKPQISFFIPLILIAWVVERWVFPFSTWVPIALAVWTTIQYGRYQRKLLVEDL DKKWKRIILNVSPITPLEHCEWLNKLLTEIWSNYFNQKLSNRLSDIVEKRLKLRKPRFLDRVELQGFSLGSCPPSLALQG MRWSTIGDQRVMQLGFDWDTNEMSILLLAKLAKPLIGTARIVINSLHIKGDLLITPILDGKALLYSFVSTPEVRVGIAFG SGGSQSLPATEWPGVSSWLEKLFADTLVKTMVEPRRRCFTLPAVDLRKKAVGGVIYIRVISANKLSRSSFKALRYSEDNF DDKDLQTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYESLPNSVKCDYLASCEVKLRHVEDDSTIMW AVGPDSGVIAKQALFCGDEIEMVVPFEGANSGELKVSVVVKEWQFSDGSHTMNNLRASSQQSLNGSSNLPLRTGRKLYVT VVEGKDLAAKEKSGKFDPYFKLQYGKVVQRTKTSHTPNPSWNQMFEFDEIGGGEYLKVKGFSEETFGDENIGSAQVNLEG LVDGSARDVWIPLERVRSGELRLQVEAVRVDDQEGSTEMARVQVMVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 597 | 597 | 0.0 | – | |
| PANTHER | 1 | 597 | 597 | 0.0 | – | |
| Phobius | 32 | 50 | 19 | - | – | |
| Phobius | 51 | 607 | 557 | - | – | |
| ProSiteProfiles | 96 | 282 | 187 | 17.718 | ||
| Gene3D | 292 | 438 | 147 | 8.1E-7 | ||
| SUPERFAMILY | 293 | 398 | 106 | 5.95E-7 | – | |
| SMART | 294 | 401 | 108 | 2.2E-5 | ||
| Pfam | 295 | 394 | 100 | 8.0E-5 | ||
| Gene3D | 474 | 602 | 129 | 5.0E-23 | ||
| SUPERFAMILY | 474 | 587 | 114 | 5.8E-22 | – | |
| Pfam | 476 | 573 | 98 | 4.7E-17 | ||
| SMART | 476 | 570 | 95 | 8.4E-13 | ||
| ProSiteProfiles | 476 | 555 | 80 | 11.078 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi2g1v0206200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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