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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0212800 |
| Transcript ID | LotjaGi2g1v0212800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G19590.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SSF7|I3SSF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66137296..66140652) extracted from Lotus japonicus Gifu genome v1.2.
TTATGAGTTAAATCATAATTTATGATATCTTGAGAAGAAAGTATAATAGTGTAGATTAATTGGGACTAAAATTTAGTTTA GTAAAATGATGTTGTTAAAAGATTGAATATCTAGTTACTATTAAAAATAAAAAATAATAAAATAGAATTAACACGTGTCA TGCCTTAATTAGTTGTATTTGAGACTGTTTTGAAACTGTCTCAAATGAGACAATAGTCGAGAGGTCCTAGATTCTCATAA ATTCCTTATCCACACTCATTATCATCGATCACATTCATGACAGAGCACTAAAATCAACAAATAAAAGATAACAAAAAATT TTAAAAAATCTATCTTTCCTTTTTCACATTTAATAGCAATTACTGAACAAACAAAAAAAAAAGTATAATCGAAACGAAAC GAAGCAAAAAACCGCCATGAATCCCAAAATCCTCATCCTCTTCGCACTTCTCCTGAATCTCACATCCAAATCGTTCCAAA ACCCTAACCCTAAACCCCCAAAATCAACCCCATCTTCGGCTCACATCGAGCTCACAAATTATGGCTTCCCCGTCGGTCTT CTCCCCGACACCACCGTCTTGGGCTTCGCCGTCAACCAAACCTCCGGCGACTTCTCCGTCCGCCTCGGTGGCGCGTGCAA GATCACTCTCCCTCCTGATAATTACGTCGCCACGTACTCCAACACCATCACCGGGAAGATCGTGAAGGGTCGCATCGCGG AGCTCAACGGGATTCGCGTTCGCGCCTTCTTCCAGTGGTGGTCCATCACCGGGATTCGCTCCTCCGGCGATAATATTGTC TTCGAGGTCGGTATGGTCACCGCGAAGTATCCCTCGAAGAATTTCGATGATAGTCCTGCTTGTGAGGGCCAGCGCTCTTC CTCCTGATTAAGGTTAGGGTTTTGTAATCAATTTGTTGAAAGTTTTGATTCTTAGTTGTGGTTGAATTGAATCTGTTTGA TATGAATGAATGATGATATAGCGTTATGTGAGTTTCGAATCATGCTTTATTTTTTCTATGATTCGGTTATGCATTTTTGG TTTTGTGGTTTTTGTGTTGCAAATGGGAATAAAGCTTTAGATAAGGATATAGAATGATAAAAGAGAGGTCTATAGTTGGA TAATGCTTTCATTTTCATGCCCTGAATTATTCCATTTTCTGTTTTTTACATTGCCAAAGTAGAATGATGACATGGGGCCC TGGCAATAATAGAAATCGGCGTGGTGGCTTGTAGACGACGGCTCGTTGCAACTACAAGCCGACATTGTCCCTTCTCTGAG TTTTGGTTTTTTTGGACATAGTATTATCAATATCATTATAAAGCTAAAGAGAACATGGGTAACATAATAAGTTTAGATTA GTATTGACATGATTGTAAAGATATCAATCATTTTTAATGATTATACTTGTTATATAAGCTTTTGGCAAATGTTTGAATGA TTGTTTTTTGCCGACTTTTCTTCAACATAAAGATCCCTTGCAGAATTTTGTTAATGCTGGCAAAAACTTTTGTGGTGTGT TAATTGTGCTATGATCTTTCTTCTCTTTTGTACAAGTTGATGTTAAACCCTGAAATAACTAAAGTTTTCTTCTGTATTCG TTATACCAATGTCATCCTCAATATCTTATTCAGTAATCCTGCTTCAAGTTTTTTGGTAGTGTGTCAAATGTATTAGAATG CGGATTTGATTTTTTGTATTATATTATTTTGTTAAATTATCAATGTCGTGTCTTAATTCATTTAACCTCATCTTAGTTGT CCCAGCTTGTCATTATTCTGATTTCTGAAAATTATTCATTTGGATTACTGGATTACTGGATTTTGATGTTTATTTATTTC CTCTCTCCTTTGGTAGGGTCGTTCCTGACTTCCTGTTCTATTGTAACTAGCAATTAGGTAGATTGCAAAAGAAGTCCTAG CTATTAGGCGGTTTTTTCTGCACCTTGCTGCCACTAAGCCCTTATATTGGCACATACATAGTACCAATTACCAAAACTAT GAACTGCATCCTTTTATTTACCATCATTTAGATATTTCTTTGGTTATTGTTTTCTCTGCGTTTGGCGTTTGCTGGCCCAC AATACAAGAAGTGAGATTTTGTTTCCACTGGTCCACCCTTACTATATTTGGTAACGCCAGGATCCCTCCTAAGTCCTAAC TACTAAGTAACTGCTCGTTGTGGTTTTTACATTTACAAACCAATAGGATATTTCTTAATCTGAAATGTACAGGGTAGTCA ATTATTCTGTTACTACTTGCCATTAGTAGTTACAATACTGAGGTCTCTCAATGTGACTAGTTTATAGTTTATAGTTTATA CTTTATACAGTTAAGTACTTAGGTTCACTTAGGTTCTTTGTCACGGTAACTATGAAATATGGATGTGTATAGTTTGTTTT CCCAATGTCTTATCTTGGGCCTTTGTAATTCTTGTTCCAAGTTTAACCATGCCTCAGTTCACCAAATTGATCAGCTGAAT TAGCTTTGCTATGACTTTTAGAAGCCTTCCTTCAATCTAGGAAGAGAGATAACATTAAGATGTCTGTCACATGTGCACAT TATAAGAAAACGTTATGCTGAATCCACAGATGGTGGGTTAGACGTTAAGCTTTCATTTCTTTTTATAAAAATTTTGTTAT TATCTTTTCTTCTAGGTGCACGCATTAAAAAGGTTGTTTTTGATTCACAGAATCTATGCTAGTTGACTTGTGATGTTATT ATATTGATATGCTAAACTAGTGACATTCACCGCATTCTTTCTTTCTTTCTTTCTTTTTAACTACCTCTTTCTTTGTTGTT TTTAACGTAGATATTGTCATAGTATTGACATTTTATCCTCCTCTATACAGGGTATTAGGTACTTATTCTCAGCTTTCGTT GTCTAATGCGATGGCGTCCAGTGTCCACTAAGTGCAGATAATTTAGAAACCACTCGTTTCATGTGTAATATTGCAAGGCT AGTGCCTTTATGCAATCGTATTTATGCTACGAAGAATCTACTATGGTGTTACTTGATGGTCATGTCACCCACTTGTTGGA CTCGTGAATAAGGCCACTTTGAACTTTTTCTATTTGATATTCTCTGTTGCCATCTATGCTGTAGCGTGCTTGCAATTTCA AACTCAGTGCCATGCAAATATCTCGCTTTTCCTTGGCCCAATGAGGCCTAAAGATCTTTTATGGGTTGACTACAAATTAC TATAGTTAAGTTGTTTATGTAAGGAAATTGAAGGAAATTACAAATTAATTTCGAATAGTAATTTCCTTAAATAGATAGCT TTTGAATTTAATAAGTAATTAATTTTTAAAACATTTTTTTTTCATTTTAAAAAGAGATTAATTTTTATGCACCGACG
CDS sequence (LotjaGi2g1v0212800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCCAAAATCCTCATCCTCTTCGCACTTCTCCTGAATCTCACATCCAAATCGTTCCAAAACCCTAACCCTAAACC CCCAAAATCAACCCCATCTTCGGCTCACATCGAGCTCACAAATTATGGCTTCCCCGTCGGTCTTCTCCCCGACACCACCG TCTTGGGCTTCGCCGTCAACCAAACCTCCGGCGACTTCTCCGTCCGCCTCGGTGGCGCGTGCAAGATCACTCTCCCTCCT GATAATTACGTCGCCACGTACTCCAACACCATCACCGGGAAGATCGTGAAGGGTCGCATCGCGGAGCTCAACGGGATTCG CGTTCGCGCCTTCTTCCAGTGGTGGTCCATCACCGGGATTCGCTCCTCCGGCGATAATATTGTCTTCGAGGTCGGTATGG TCACCGCGAAGTATCCCTCGAAGAATTTCGATGATAGTCCTGCTTGTGAGGGCCAGCGCTCTTCCTCCTGA
Protein sequence (LotjaGi2g1v0212800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPKILILFALLLNLTSKSFQNPNPKPPKSTPSSAHIELTNYGFPVGLLPDTTVLGFAVNQTSGDFSVRLGGACKITLPP DNYVATYSNTITGKIVKGRIAELNGIRVRAFFQWWSITGIRSSGDNIVFEVGMVTAKYPSKNFDDSPACEGQRSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 5 | 156 | 152 | 7.3E-70 | ||
| Phobius | 5 | 13 | 9 | - | – | |
| PANTHER | 5 | 156 | 152 | 7.3E-70 | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| SUPERFAMILY | 15 | 151 | 137 | 9.55E-35 | ||
| Phobius | 22 | 156 | 135 | - | – | |
| Gene3D | 26 | 145 | 120 | 2.4E-26 | ||
| Pfam | 39 | 143 | 105 | 3.4E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0212800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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