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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0212900 |
Transcript ID | LotjaGi2g1v0212900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G24450.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|I3S6V6|I3S6V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66145206..66149945) extracted from Lotus japonicus Gifu genome v1.2.
TAGTTCACAACAATAGGTTTGGTCCAACTATGTAAAAAAACAGATAAATGCTCCACCTTCAATTCTCCGTGAAACCCTGC ACTTTCTTCCCTCTTTGGCGTGTAGTCTGAACTTCAGGTATGAGCATTATCACTATACATCTCCCTCTACAACTTACCCA TGCTGAAGGAAAACTCATGTGACTGACACACAACCTGACATAACTTAGCCATTAGCAATTGTTTTTCAAAAATTCTCCTT CTGCTTCCATTGAAAGGTTACATTACTCTGCACATGGACCAACCTTTATTTGCACTATTATTCAATGATTCAATAATTGA GAAATGCTTGTTATATCTCATGGACATGGTGTCCAATAATGCTCGACCAACTGTCCCATTTTGCACTATCATACGGTGGC GGTGAAGACAAATATGTCCACAGTTTCATTCCAGTCTTCATGAATCTCAATTACTTAATTCTGGCATTTTGTCACTTTGC TTCCAGGCAATTTAAACTTGAGTTTAAATTTGATGCACCTTATTTTACACTATGATTAAATGACATGTCTCAATCTCAAT GCCTTGAATAAATTTTTAACATTCAATTAAAAACCGCATGTAAGTTTATAATTGCTCCACTAATGCATTTTTTAATTGAC ATAATAAAATTTCATTGACGAGACCGGAAATTGAAACACTATATAGATACTGTATATCTTGATCTATCCAATTCATAGTA TTGTAAATTAAGCACTGTGCACTATTGTTATATGATGATAGGTTAATTTGTATTAATGTACCAATGCAATACTCTGTACT ATATCCTAAAAATATGTGACATACTGTTCTTTTACACTATTAGACCTCTTTTCCATGCTTATGGTTCATTGATTTGCATG ATCTACCTAACCACAAATTGGGATCATTTCTTGGGGAGGAGTTTATTATAGGGTTCTAAAAACTTGTGCATTGCACATTT GCTTTTTAACCTGCAATAGCAAGTTTAGCAGGTAATATGTATTTTTATTAAAAAAAAATATTTAAAATATGATGATATAA TTAGAGAAATATTTATTGAATAATTATAGTTAAGTGGGTATGGTAACTTTTTGAGTTACTGATCCAGTAAAAAAAACACT TTAATAAATTTTCAACTAACCCATTAATCATTAACAACTAATTAATTCAAGTAAAACATTAATCATTAACAAATTAATTC ATCCCTTTCACCTTAGTAACAAACCCAATTCACCCAACCCTAAATATGATTCAGAACCCCTGACCCATCATCATCATCTT CAACCTCCATGCCAAGATCCAGTTGGAACCCCTCAATCAAAACTTGCTCTTCGCCTCTGTGTTTTTGTTAGTTGAATATC AAACTATACTTTTTGCATACAGTTGTAATTCACTTGCTAAGTTTGTTCCTTGGATTCTTTGATGAAATGGTACGTTAAGA TAGCTTTGCCCTTATTGTTTCGGTAATTACTGGTTTGCTGTTGAAAAAGACCAATATTGGTGACCAAGATTCATGGTTTG CAGATTCATGATTTGGGTTGATAACCAAGAACCATGTATTTGGGGGTTTTTGATCTTGAGGTTTTTTTTTTCTGGGTTTT TACAGTTTGAAGAAGAACAGCATGTTGAATAATTAATTTTTTTTTAACTATTGAATAATTAACCTACGAGAAGGATGGAG TGTTCTGGAGCCTTGGAACCCTAGATGAATCTTCTTGAGCCTTTTGATTTCGTTTGGAGTTGGAGATAGGATAATATGGA ATGGAAGGTTTAATTGATTTGAATGATATATGGATTGGTAGATGGGGTAAGTTGGGGTAGATCTGATTAACATTAATGGT AGTTAATTTTTTTTTTTACTTATTTAAATTTTTTTTACTTCTCAGATTTACCTTACTTATTAACCACATGGGTTATCTTA AATGAATTCTAATCATTCTTTAACCATTTACTTAATAATTATATAATATATTAACTATTTTAATTTTCAAAAATATAAAA AATACAAAAAAACCTGAAGTAGCAGGTCAAAAGGTTAAGGTGCAACTTTACACAAGTTTTTAGATGATCATAATAAATTT TTCCATTTCTTGGTTCTACGGTCACTGCAAGTCTGCACCAACAAAATAATAAGTGTATAAACGTTTTGACCAATTTAACT TTTTTAAATTAATTTGAACTATTTAATATACGAATTAATGGTCAAGAATTTACAGCAAAGAACTACAAAGAATAGGACGA CATAAATTCCACATTCAATTAACCACCAAGATCTACATATAATGATTCCTTTCATCTAATTTGGGTTAAGCCTCATCACA TGGACAAAGTTTGTCATTACTACTTCCGGTGCATTGATCCCATGTTTCTTCCTTTATTTACTTAATTACATCCTTCATCA TGTGAGTCTAGTTTCTCCTCTTTTAATACGCATCTCTTTCTTCCATAACTAAATAGGAGTAGTCACATAGAGGCAGCTTC CCAACTACATTTCCTCTTTTATGTCACATGTGGATGCATTTGCCTTTAATGGGTTTGTTATAGGAAAAATTAGGAAATGA CACATAACTTGTGATTCAAACTTAGTGTATTTATATAGTGTATTTGAGTCACAAAATAACATTTTGTAAATCAGCTAGTC TATGGTTAGAAAACCTTTAACTATCAAGTTAAAATCAATTTTAAAGAAAAACTTTTTGAAATAACTTATGAGTGTCATAA TTGATTATGAGAAAAGCGACGCTGATCCAAACTTGCTATCTAACAGCCCACCATCTAATTCTACATAATTTAAGTCTGAG AGTCATGACTATACAAGATCTGTAATGTATGGTGACAATTAATGTCATTATCCTAGTTGCATCCTTTGTGGTCAAGTGTT TGGTGGTTCATCACATGACAAACTCTAACCACATTTTCTAATGTTATTCCTTGTAAAATCCATTGGGCCCTGTGCAGCTT TTGGTTTCCCCAATAAAATTTGACCTTAAACTTCTTTGTTTCCTCCACTCCCTTGATGTCTCTTTCCTCCTTATAAGATA TTCTAGTTGCTACTACCCTGCTTTAGTGGAAATCTTGTTGGAAGTTACACAATTGTTAGAACCAAGCCCTTCTTCACTGA GACAAAAGCTTTGGAATGGGGAAACTAGGGAGGATGTTGGGCACATTCTGTCTTTCTTCTGGTGCCAAAACCTGCTTCTG CATGAATTCCACTCAATTTGAAGATGAGTTGGAGAAAAATCCCTTGATTGGTAGTGGCACTGATCATACACTGAGAATGA AGGATGTTGTAGCTGGGAAACAGACATTGGCTTTTCAATTGAAACCCCAGGTAAAGCCTTACTTCCTTTTTACTGGTTTT AATTAAGCACTCAAGTTTCTATTGTAACAACACTACCTCCCATCTTTCTGAGAATTTGGGCCATGTCTAAGTCTATTTCA AATGTTAGCTCATGGATAAGGATTGTTCTACTCATTATAATGTCTTACTTAATTATATTTCTGGTCAATGTGAGACTTCT TAACATCAACATACATCTGTTACTTTTTCAGCCCTGATACATTGACCAAAGATATGATTGAATAAGTTCATATGTAATTA TAGAACAATCCTCAGTCGAACTTTTGGGGTTAGAGTTAGCTACTCTCTTTCCAGAAATAAAAAAGAAAATACATGATTAC ATATTATTTTATCAGATAACTTGTGTATGGTATGGGTTAATCTGACATATTACTATGGTCCAAAATATGCAGATAGTGAT GTTGAGGGTGTCCATGCATTGCCATGGCTGTGCTAAACAAGTTGAGAAACATATCTCGAAGCTGGAAGGTGAGCATATTG CCATTTTTTCTTCATAAAATGGGTTTCTAGCATAATTCAACTAAAACAAAATGACAAGACAATTCAACTTTAGCATAATT CAAAATGGGGTATGGTTCTGTTTTGTTTGCTTGGTATATATTTATAGTATCTACCTCTTAACAGGAGTGAGCTCATACAA GGTGGATCTTGATTCCAAAATGGTAGTTGTTATGGGTGACATTCTTCCCTTTGAAGTGTTGGAAAGTGTGTCTAAGGTGA AAAATGCAGAGCTTTTGAAATCTCATGATGATAAGGAATAATTTTGGACCCAACATTCATCTTTAGCAGAGACAAAAGTT GAAGGAGCAGAATGGAGGAACTCTTAGTCTCTTTCTGCCATTGTTATGTACAGTATATAATATTTATAACCATGCCAAGC TCCAGGAATTGCAGTGTGACAAAGTTAAGTTAGAAAAGCTGAAGCTTATTAATGTCTCTGGCTTTGAGACTTTATTTGTA TTAACACATTTGTGAAGGTTCAGTTGTAAGACATTAGCATTAATGATTGAAATCTTCACATCTGTGTGACAGTGTGAGTG TGACCAAGTGGCACCGCTAGTGAAAAATCAGTACACTTCATTTATGTTAAACTTGAATTAGTATCTTCCTCTTTTGAACA TTCATTTTGTTTTCTTTTCCACCTCAAATCTTACTTCCAAATATATGCAGATGGAAACTGGCAGTACTGTGACAGTGACC AGAATTTTGTGGTCACTGATAACACAATCATAGACATGTGATGATTATAAGATAGAGATTTCTAGCAATGGGGAAGTTTG ACCCCAAACGCTACCGTTTGGCCACTGGAAAGTGATTTTTATATTATTAAAGGCAAAAATAAGATCCATGGTCATTGCTT ACAGCCAATCTTTACTCAAC
CDS sequence (LotjaGi2g1v0212900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAACTAGGGAGGATGTTGGGCACATTCTGTCTTTCTTCTGGTGCCAAAACCTGCTTCTGCATGAATTCCACTCA ATTTGAAGATGAGTTGGAGAAAAATCCCTTGATTGGTAGTGGCACTGATCATACACTGAGAATGAAGGATGTTGTAGCTG GGAAACAGACATTGGCTTTTCAATTGAAACCCCAGATAGTGATGTTGAGGGTGTCCATGCATTGCCATGGCTGTGCTAAA CAAGTTGAGAAACATATCTCGAAGCTGGAAGGAGTGAGCTCATACAAGGTGGATCTTGATTCCAAAATGGTAGTTGTTAT GGGTGACATTCTTCCCTTTGAAGTGTTGGAAAGTGTGTCTAAGGTGAAAAATGCAGAGCTTTTGAAATCTCATGATGATA AGGAATAA
Protein sequence (LotjaGi2g1v0212900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKLGRMLGTFCLSSGAKTCFCMNSTQFEDELEKNPLIGSGTDHTLRMKDVVAGKQTLAFQLKPQIVMLRVSMHCHGCAK QVEKHISKLEGVSSYKVDLDSKMVVVMGDILPFEVLESVSKVKNAELLKSHDDKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 22 | 22 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
PANTHER | 4 | 132 | 129 | 7.4E-59 | – | |
PANTHER | 4 | 132 | 129 | 7.4E-59 | – | |
Phobius | 8 | 17 | 10 | - | – | |
Phobius | 18 | 22 | 5 | - | – | |
Phobius | 23 | 135 | 113 | - | – | |
Gene3D | 64 | 126 | 63 | 4.3E-16 | – | |
SUPERFAMILY | 64 | 122 | 59 | 4.58E-14 | ||
ProSiteProfiles | 65 | 122 | 58 | 12.036 | ||
CDD | 68 | 109 | 42 | 6.13794E-11 | ||
Pfam | 70 | 121 | 52 | 6.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0212900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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