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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0212900 |
| Transcript ID | LotjaGi2g1v0212900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G24450.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|I3S6V6|I3S6V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66145474..66149982) extracted from Lotus japonicus Gifu genome v1.2.
CACTTCTATTATAAATTAAACAAGAGTGTTATGGTGTTAGTTCACAACAATAGGTTTGGTCCAACTATGTAAAAAAACAG ATAAATGCTCCACCTTCAATTCTCCGTGAAACCCTGCACTTTCTTCCCTCTTTGGCGTGTAGTCTGAACTTCAGGTATGA GCATTATCACTATACATCTCCCTCTACAACTTACCCATGCTGAAGGAAAACTCATGTGACTGACACACAACCTGACATAA CTTAGCCATTAGCAATTGTTTTTCAAAAATTCTCCTTCTGCTTCCATTGAAAGGTTACATTACTCTGCACATGGACCAAC CTTTATTTGCACTATTATTCAATGATTCAATAATTGAGAAATGCTTGTTATATCTCATGGACATGGTGTCCAATAATGCT CGACCAACTGTCCCATTTTGCACTATCATACGGTGGCGGTGAAGACAAATATGTCCACAGTTTCATTCCAGTCTTCATGA ATCTCAATTACTTAATTCTGGCATTTTGTCACTTTGCTTCCAGGCAATTTAAACTTGAGTTTAAATTTGATGCACCTTAT TTTACACTATGATTAAATGACATGTCTCAATCTCAATGCCTTGAATAAATTTTTAACATTCAATTAAAAACCGCATGTAA GTTTATAATTGCTCCACTAATGCATTTTTTAATTGACATAATAAAATTTCATTGACGAGACCGGAAATTGAAACACTATA TAGATACTGTATATCTTGATCTATCCAATTCATAGTATTGTAAATTAAGCACTGTGCACTATTGTTATATGATGATAGGT TAATTTGTATTAATGTACCAATGCAATACTCTGTACTATATCCTAAAAATATGTGACATACTGTTCTTTTACACTATTAG ACCTCTTTTCCATGCTTATGGTTCATTGATTTGCATGATCTACCTAACCACAAATTGGGATCATTTCTTGGGGAGGAGTT TATTATAGGGTTCTAAAAACTTGTGCATTGCACATTTGCTTTTTAACCTGCAATAGCAAGTTTAGCAGGTAATATGTATT TTTATTAAAAAAAAATATTTAAAATATGATGATATAATTAGAGAAATATTTATTGAATAATTATAGTTAAGTGGGTATGG TAACTTTTTGAGTTACTGATCCAGTAAAAAAAACACTTTAATAAATTTTCAACTAACCCATTAATCATTAACAACTAATT AATTCAAGTAAAACATTAATCATTAACAAATTAATTCATCCCTTTCACCTTAGTAACAAACCCAATTCACCCAACCCTAA ATATGATTCAGAACCCCTGACCCATCATCATCATCTTCAACCTCCATGCCAAGATCCAGTTGGAACCCCTCAATCAAAAC TTGCTCTTCGCCTCTGTGTTTTTGTTAGTTGAATATCAAACTATACTTTTTGCATACAGTTGTAATTCACTTGCTAAGTT TGTTCCTTGGATTCTTTGATGAAATGGTACGTTAAGATAGCTTTGCCCTTATTGTTTCGGTAATTACTGGTTTGCTGTTG AAAAAGACCAATATTGGTGACCAAGATTCATGGTTTGCAGATTCATGATTTGGGTTGATAACCAAGAACCATGTATTTGG GGGTTTTTGATCTTGAGGTTTTTTTTTTCTGGGTTTTTACAGTTTGAAGAAGAACAGCATGTTGAATAATTAATTTTTTT TTAACTATTGAATAATTAACCTACGAGAAGGATGGAGTGTTCTGGAGCCTTGGAACCCTAGATGAATCTTCTTGAGCCTT TTGATTTCGTTTGGAGTTGGAGATAGGATAATATGGAATGGAAGGTTTAATTGATTTGAATGATATATGGATTGGTAGAT GGGGTAAGTTGGGGTAGATCTGATTAACATTAATGGTAGTTAATTTTTTTTTTTACTTATTTAAATTTTTTTTACTTCTC AGATTTACCTTACTTATTAACCACATGGGTTATCTTAAATGAATTCTAATCATTCTTTAACCATTTACTTAATAATTATA TAATATATTAACTATTTTAATTTTCAAAAATATAAAAAATACAAAAAAACCTGAAGTAGCAGGTCAAAAGGTTAAGGTGC AACTTTACACAAGTTTTTAGATGATCATAATAAATTTTTCCATTTCTTGGTTCTACGGTCACTGCAAGTCTGCACCAACA AAATAATAAGTGTATAAACGTTTTGACCAATTTAACTTTTTTAAATTAATTTGAACTATTTAATATACGAATTAATGGTC AAGAATTTACAGCAAAGAACTACAAAGAATAGGACGACATAAATTCCACATTCAATTAACCACCAAGATCTACATATAAT GATTCCTTTCATCTAATTTGGGTTAAGCCTCATCACATGGACAAAGTTTGTCATTACTACTTCCGGTGCATTGATCCCAT GTTTCTTCCTTTATTTACTTAATTACATCCTTCATCATGTGAGTCTAGTTTCTCCTCTTTTAATACGCATCTCTTTCTTC CATAACTAAATAGGAGTAGTCACATAGAGGCAGCTTCCCAACTACATTTCCTCTTTTATGTCACATGTGGATGCATTTGC CTTTAATGGGTTTGTTATAGGAAAAATTAGGAAATGACACATAACTTGTGATTCAAACTTAGTGTATTTATATAGTGTAT TTGAGTCACAAAATAACATTTTGTAAATCAGCTAGTCTATGGTTAGAAAACCTTTAACTATCAAGTTAAAATCAATTTTA AAGAAAAACTTTTTGAAATAACTTATGAGTGTCATAATTGATTATGAGAAAAGCGACGCTGATCCAAACTTGCTATCTAA CAGCCCACCATCTAATTCTACATAATTTAAGTCTGAGAGTCATGACTATACAAGATCTGTAATGTATGGTGACAATTAAT GTCATTATCCTAGTTGCATCCTTTGTGGTCAAGTGTTTGGTGGTTCATCACATGACAAACTCTAACCACATTTTCTAATG TTATTCCTTGTAAAATCCATTGGGCCCTGTGCAGCTTTTGGTTTCCCCAATAAAATTTGACCTTAAACTTCTTTGTTTCC TCCACTCCCTTGATGTCTCTTTCCTCCTTATAAGATATTCTAGTTGCTACTACCCTGCTTTAGTGGAAATCTTGTTGGAA GTTACACAATTGTTAGAACCAAGCCCTTCTTCACTGAGACAAAAGCTTTGGAATGGGGAAACTAGGGAGGATGTTGGGCA CATTCTGTCTTTCTTCTGGTGCCAAAACCTGCTTCTGCATGAATTCCACTCAATTTGAAGATGAGTTGGAGAAAAATCCC TTGATTGGTAGTGGCACTGATCATACACTGAGAATGAAGGATGTTGTAGCTGGGAAACAGACATTGGCTTTTCAATTGAA ACCCCAGGTAAAGCCTTACTTCCTTTTTACTGGTTTTAATTAAGCACTCAAGTTTCTATTGTAACAACACTACCTCCCAT CTTTCTGAGAATTTGGGCCATGTCTAAGTCTATTTCAAATGTTAGCTCATGGATAAGGATTGTTCTACTCATTATAATGT CTTACTTAATTATATTTCTGGTCAATGTGAGACTTCTTAACATCAACATACATCTGTTACTTTTTCAGCCCTGATACATT GACCAAAGATATGATTGAATAAGTTCATATGTAATTATAGAACAATCCTCAGTCGAACTTTTGGGGTTAGAGTTAGCTAC TCTCTTTCCAGAAATAAAAAAGAAAATACATGATTACATATTATTTTATCAGATAACTTGTGTATGGTATGGGTTAATCT GACATATTACTATGGTCCAAAATATGCAGATAGTGATGTTGAGGGTGTCCATGCATTGCCATGGCTGTGCTAAACAAGTT GAGAAACATATCTCGAAGCTGGAAGGTGAGCATATTGCCATTTTTTCTTCATAAAATGGGTTTCTAGCATAATTCAACTA AAACAAAATGACAAGACAATTCAACTTTAGCATAATTCAAAATGGGGTATGGTTCTGTTTTGTTTGCTTGGTATATATTT ATAGTATCTACCTCTTAACAGGAGTGAGCTCATACAAGGTGGATCTTGATTCCAAAATGGTAGTTGTTATGGGTGACATT CTTCCCTTTGAAGTGTTGGAAAGTGTGTCTAAGGTGAAAAATGCAGAGCTTTTGAAATCTCATGATGATAAGGAATAATT TTGGACCCAACATTCATCTTTAGCAGAGACAAAAGTTGAAGGAGCAGAATGGAGGAACTCTTAGTCTCTTTCTGCCATTG TTATGTACAGTATATAATATTTATAACCATGCCAAGCTCCAGGAATTGCAGTGTGACAAAGTTAAGTTAGAAAAGCTGAA GCTTATTAATGTCTCTGGCTTTGAGACTTTATTTGTATTAACACATTTGTGAAGGTTCAGTTGTAAGACATTAGCATTAA TGATTGAAATCTTCACATCTGTGTGACAGTGTGAGTGTGACCAAGTGGCACCGCTAGTGAAAAATCAGTACACTTCATTT ATGTTAAACTTGAATTAGTATCTTCCTCT
CDS sequence (LotjaGi2g1v0212900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAACTAGGGAGGATGTTGGGCACATTCTGTCTTTCTTCTGGTGCCAAAACCTGCTTCTGCATGAATTCCACTCA ATTTGAAGATGAGTTGGAGAAAAATCCCTTGATTGGTAGTGGCACTGATCATACACTGAGAATGAAGGATGTTGTAGCTG GGAAACAGACATTGGCTTTTCAATTGAAACCCCAGATAGTGATGTTGAGGGTGTCCATGCATTGCCATGGCTGTGCTAAA CAAGTTGAGAAACATATCTCGAAGCTGGAAGGAGTGAGCTCATACAAGGTGGATCTTGATTCCAAAATGGTAGTTGTTAT GGGTGACATTCTTCCCTTTGAAGTGTTGGAAAGTGTGTCTAAGGTGAAAAATGCAGAGCTTTTGAAATCTCATGATGATA AGGAATAA
Protein sequence (LotjaGi2g1v0212900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKLGRMLGTFCLSSGAKTCFCMNSTQFEDELEKNPLIGSGTDHTLRMKDVVAGKQTLAFQLKPQIVMLRVSMHCHGCAK QVEKHISKLEGVSSYKVDLDSKMVVVMGDILPFEVLESVSKVKNAELLKSHDDKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 4 | 132 | 129 | 7.4E-59 | – | |
| PANTHER | 4 | 132 | 129 | 7.4E-59 | – | |
| Phobius | 8 | 17 | 10 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 135 | 113 | - | – | |
| Gene3D | 64 | 126 | 63 | 4.3E-16 | – | |
| SUPERFAMILY | 64 | 122 | 59 | 4.58E-14 | ||
| ProSiteProfiles | 65 | 122 | 58 | 12.036 | ||
| CDD | 68 | 109 | 42 | 6.13794E-11 | ||
| Pfam | 70 | 121 | 52 | 6.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0212900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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