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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0214300 |
| Transcript ID | LotjaGi2g1v0214300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Multiprotein-bridging factor, putative; TAIR: AT3G24500.1 multiprotein bridging factor 1C; Swiss-Prot: sp|Q9LV58|MBF1C_ARATH Multiprotein-bridging factor 1c; TrEMBL-Plants: tr|Q8S4Q2|Q8S4Q2_9FABA Ethylene-responsive transciptional coactivator-like protein; Found in the gene: LotjaGi2g1v0214300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66431100..66432260) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAAATAATGTCTTAAAATGATATATTGAAAATGTCTTAAAACTGATAACTCCACGTAAGCAAGAAGAAACGCCACG CAATCAAACAAGTACCAATTCTCCCTCCTCCCATTAGAACTTTCCGGAGATAACCCGAACCCCCCACCGGCCCACCACCT TCTCACAAACAAATAGAACGTTCCAGACACTCACCACCTATAAATACCAACCACCGCTTCACACCACGCATCTTCAATCC TCTCATTTCCCCAATCACTCTCATCATTTCCTCCAATCTCAATCCCACAACCACAATGCCAACCCGATCAACCGGAGCCA TAAGCCAGGACTGGGAGCCAGTCGTTCTACACAAATCAAAGCCCAAGGCACAGGACCTGCGAAACCCCAAGGCCGTGAAC CAGGCTCTGCGAACCGGCGCGGAGGTGCAGACGGTGAAGAAATCCGACGCCGGATCCAACAGGAAAACCGCCGGCCCGGT TGTGAACGCGAGGAAGCTTGACGAGGCGGCGGAGCCCGCGGCGCTGGGGCGCGTGGCGGGGGAGGTGAGGCACGCGATTC AGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAGCTGGCGAAGCAGATCAATGAGCGGCCGCAGGTGGTGCAGGAG TATGAGAATGGTAAGGCGGTGCCGAATCAGGCTGTGCTTGCGAAGATGGAGAGGGTGCTCGGGGTGAAGCTTAGGGGTAA AATCGGAAAGTGAGGTTTTAGGGACATTGAATGTTGTGGTGTGATTCTGTTGGAACAAATCGTTTTGTGTCAGAATTGCT TTGCTATTGCTACTGATTCTGTAATGAAATATTGTAATCTCGTTGTAAATATTAAATAATGTGTTGCGATTTTGATCTTT CCGGATTTTGCACTATCTTTGGTTGCTCAGGGTGTTTTGGTTTATGCCTTCTGTGGTTTAATTTTAAAAGAAAAATGGTT AAACATGAAATCATAGGAATATTTTCCGGCTAGAGATGGAAACCAAACCTCGCTCAAAGTTCCGGAACGGTTTTCACGTT TAACCAAAAGAAAAAAAAAGAAAAAAAGGTTTTTCCAATTGTGTATGCCAATGTTTCTTTTCTAAACTCTCGTGTTTATG CTTCTATGTGTTTTCATCAAAGCAATAAACATCGCTGCCTT
CDS sequence (LotjaGi2g1v0214300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAACCCGATCAACCGGAGCCATAAGCCAGGACTGGGAGCCAGTCGTTCTACACAAATCAAAGCCCAAGGCACAGGA CCTGCGAAACCCCAAGGCCGTGAACCAGGCTCTGCGAACCGGCGCGGAGGTGCAGACGGTGAAGAAATCCGACGCCGGAT CCAACAGGAAAACCGCCGGCCCGGTTGTGAACGCGAGGAAGCTTGACGAGGCGGCGGAGCCCGCGGCGCTGGGGCGCGTG GCGGGGGAGGTGAGGCACGCGATTCAGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAGCTGGCGAAGCAGATCAA TGAGCGGCCGCAGGTGGTGCAGGAGTATGAGAATGGTAAGGCGGTGCCGAATCAGGCTGTGCTTGCGAAGATGGAGAGGG TGCTCGGGGTGAAGCTTAGGGGTAAAATCGGAAAGTGA
Protein sequence (LotjaGi2g1v0214300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTRSTGAISQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVQTVKKSDAGSNRKTAGPVVNARKLDEAAEPAALGRV AGEVRHAIQKARLEKKMSQAELAKQINERPQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 144 | 144 | 8.3E-79 | – | |
| PANTHER | 1 | 144 | 144 | 8.3E-79 | – | |
| Pfam | 11 | 80 | 70 | 1.6E-19 | ||
| MobiDBLite | 43 | 66 | 24 | - | – | |
| Gene3D | 72 | 145 | 74 | 3.4E-29 | ||
| SUPERFAMILY | 85 | 139 | 55 | 3.1E-13 | ||
| CDD | 87 | 139 | 53 | 8.00446E-12 | ||
| SMART | 87 | 142 | 56 | 5.6E-14 | ||
| Coils | 88 | 108 | 21 | - | – | |
| Pfam | 88 | 139 | 52 | 2.4E-14 | ||
| ProSiteProfiles | 88 | 142 | 55 | 13.862 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0214300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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