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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0215300 |
| Transcript ID | LotjaGi2g1v0215300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT4G32350.1 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q54I39|IST1L_DICDI IST1-like protein; TrEMBL-Plants: tr|A0A072UBV7|A0A072UBV7_MEDTR Regulator of Vps4 activity in the MVB pathway protein; Found in the gene: LotjaGi2g1v0215300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66666799..66673435) extracted from Lotus japonicus Gifu genome v1.2.
CCTACCAAATCATCCCAAAAATGATCTAAAATATTTGGAGAATAAATTTAGGCACCTCTCATAACACTTTCAATCCCCAT CGTCCATCAAGTCACATCTGTAATACAATCAACGGTCAACACCACTCTACACAATCCTAAACCCTGTTTCACCTGCACGA GAACACAATCACCTTCTGATATAGCAGCATTTTTTTTCTTCCCTTTTTCCTTTCCTTCTTCTTCGTCTTCCACTTCATTG AGCTCTGTGCCATTGCTCTCTGAACCAAGCGATGGCGAATCTTCCACTCTGAGCTACCGAGCCGAATCGTCCACCGAGTC ACGCCACCGAGTCCGCCGCAGGCTCAGATCTTCCAGCATGTTGGACAGTTTGCTCGGTCGTGGATTCACCGCAAAATGGT TCGTTCACCACTGCAATTTCTCTGCTCCGTTTTGCTAGTTCATAGTTATGATCTGGTTCAATTGAAGTAGTAGTAGTTTT GATTGATAACTGTGATGCACATTTTTTTTTTCGTTTTTTTGTGTTTTTAGCAAATCGTTGATCAAATTGACGAGGAATCG GATCGATGTGATAAGGAGGAAGAGGAAGGCGACAGAGAAGTTTCTGAAGAAGGATATGGCTGATTTGTTGTCGAATGGTT TGGATGTCAATGCATACGGAAGGGTAAATTGCTTTTTTCTTTCTAATTATTATCAATTTTGAGTTTAGGGTAATTTTTGG ATTAGGTTTTGTGAAATGAAATTCGATATCTGAGATCAATGCAGAGCTTTTTGATTTTTCAATTTGATATTTAACTGTGA AAATTGATATTTTGATTGATTCTACTGCTAGTCAAAGGACACTGATTCAATTGTGTTTTGACTTTTGAGTCTTTGCTCTT TCCAGTTTGGATTGGTTTATTGTGAGATGACTGTATTTTCCTGTTTGAAGTATCTGAAGGATGAATTCCTATTTGCCAGT TTTGATAGTGTCAATGGTTAATTGTGTTTGCAAGTTAACTTTTATCTTGCTCCTTTGGTGGTTATGCAGGCTGATGGACT CATTAGTGAGTTGACACTGTCATCTTGTTATGATTTTATTGAGCAAACCTGTGAGTTTGTGTTGAAGCACCTCTCAGTGC TGCAGAAAGTGAGGTACAACAACTACTACAACTCCATTTTTATTATTTGCGATTTAGATTGAATGTCACTTTTTTTTTCT CTTTGATGTTTTTTCATTTGAATGTAATTTATGAAGACAAACTGCTAGGCTTAATGCACCGATTATAATTGCTCAGCCAG GAAATGGTTAGTAAAATTTTGGATTATGAGCAGGAGTAATATATGCGTGGTCAAAGCAGACTTCAGCTGTTTAACAATTG AACTAAAATGTTTCAAATATATTTATTCAATAGTCATGTGTCCAGTCACTCACTCCCTTGAGGTGGTTATCGGGGAAAAA AATCAATCAAGGCTGAGTAATTTTCAAATTTTACCTGATGTTACTCTTTCTATTTTCATTGTCCCGCAATTTCCCATTCT AATCACTTTTGATTATTACAAAATAAACCTTAGAAGTTAGAACCATATCACCATGTCAGATAATATATAGAAACTTTCTT GTAACATCTTCTGCATTGTCATCCAATTGTCACTTTCCATTATGAGAATAAAAAGAAGGTTATGATATTCTCGATTTATT CACGTTGGTTCTACCCAGACAATGAGTTCACTATGCCGTAGTTGGCTGTCTGCCTTCTTTTGATATTGTTAATATTCATT TCCTATTGTCATAGTTTCTGAAAGAAAACCGGCTTAATGTTCATCATTACAACACCATAAGTAGTGTCCAAATATCCTAA TCTTGGTTGTGTAACCCTTTCAAATATTTCCTCATAAATTAAATTGGATAATCGAAATGCTTAAATTGCTTTCATTTCTG TTACAGTGGATGCCCTGAGGAGTGCAGGGCGGCTATCTCATCTCTGATGTTTGCAGCTGCAAGGTTTTCTGATCTCCCAG AGCTACGTGATCTTCGACAAATATTTCAGGAGAGATATGGAAGCTCCCTGGAGTGTTACGTTAATCAACAGGTCAATCTT CACTTTTTTTTTTTCAACTTCATTAGAATTTTACAAATTTATGCTTTATTACGGAACTTGCTCATTAAATTTGTAATCAT CAGTTTGCTGCAAATATGAATTCAAAGTCTTCTACATTGGAGAAGAAGGTTCGCTTGATGCAGGACATTGCTTCAGAGTT TTCAATAAAGTGGGACTCCAAAGCGTTCGAACTGAGAATGTCGAAATCCTCTACTGTTGCACAGGTGTTGCCCTAAGCCT TTTTTTCATTTCTTCTCTTCTTTTGTAGAGTGAATTACTCTCCTCTCCTTTGAGAGAAGCATTAATTACTCTCACCTCCC CTCTTATTTCAAAACATACACTCTTCTCCCCTCTGAGAAGCTTTAATTACACTCCCTTCTTTTATTTTAAATCCTACTAC CCCCTCCCCTAAGATAAATATTTATTACAATTTAGTATATTTTAATTGAAATAGATATTTCAATGATTTAAAAGACTGTA AACTAGTCTTCTAGCAAAGTTTTCTTTTCTTTATAATTATTAATGTCTTGATTTACTAATTTTAATCACTTCAATATTCT TTTTGGTGAACTTAAATCTTTTAAATAGTTATTTTATCGTCTTCCTAATTTTTTATTTCATCTTTAACTGGTCCTATGAT TGATACTAGGAATTTAAGATTATATATTAATATTGATAGAATTATAAATAGAGAAAAAGATGTTAATAACAAGTCTATTT GTATTAACATGGACCAAAGTGTAATATATATTTATGTTTTAAGGAAGAAGAGTGTAGGTTTTGAAATAAGAGGGAAGAAA GTGTAGTTAAAGCTTCTCTCAGGGGAGGGAGAGTAATTTACTCTTTTCTATATTTGCTTCTTAGTTAAAAATTTCTCCAA TTCTTAATTTACATAACATCCCTTTCATTTAGAATTTACTTACAACTAAATTTAAAAAAAAAAAAATTCAATTGGGAAAC CATTTTGACAATGTTTGTTAAACTGTAATTACTTACTTACGATTCTGAACTCTTGTGAACGGAAAAAACTCCCTGGCCAT CCCCCTACCGCTTAGTGCGCTGACTGTGGGGCGAGAATTAGTCTCACGGCTAACAGCTGTGAGGATACCTTGGCCTAGAC AAAAAAAATTGTAATTACTAGAGATGTTTGTTTATGTCTACTAAGAAAGCATATATGCTTGTGCAGGGCCACAACAGTGC TTTCAAGTTTAACCATTCAGTTGATGATAATAAACCATTACAAGGCAAGATTGCTACCTCAAAAGGAGTCAAGTATGAGG CTTTGCCAGAGAAAAGTCCTGACTATTCTGATAATAGGCACAAATTTCTGAATGGCAAGGAAGCGGTTGTCTCAAAAAGT GATGTGAATCAACTTAGTTCTAAATCCAAGCTTCCTGAAAATGGTTTCAAGCCGCCAAGTAGCTATGATGAAGTCAATCT CAAAAGAGTTAGCCATGGCAATCCATTACCGGGAAGAGAAGAGCTAAGTCATAAGAAGACTGATAAAGGCTATTGCATGG AGGGTAGTATTCCAAAACAAATTGGACGCTCTTCTCAGGACGAGAGAGTGAAAGAGTTTGAAGGTGGTTCCAATCTGCGT GATACTTTGGGGAATGCCACACGAGTAAGAGAAAGCCAGGACACTGCCACTGCTAGGAAGTCTCCTAGCCACGTGGGACT TTTTTCAAGGAATAGTGTGAACGAGCCATTAGCTTTTAATCATGCTGGCCTACCTGATGATAGATTTGAGAGAAAAGTTC AAAAGGATGAAACTCCTAGGGGAAAGCCTAGCTACAGTAATGCCCTCCCACCTCCGTATTTAAAACCTAATTCTAAACTG AAGAGCAGCTCACATGGAACTGATTTAATGACTTCACATATTGACAGTAATGGAATCACTAAATATCCTTCAATACATCA AAAGCCTGATGTCGCTTCTAAGCCGGAGAGGATCCAATCAGGTTTGGATAATTCTGAGCAGGATTTACTGGGACATGCAA GACCGGGTAAAGAGGGTCATGAAAAAGAACTCTCGAATCACGAAGATGCTAAAGAAGTCCCTGTATTTAAACCAAAATCT GTGAGGCGGAAGCATTCAAAATCTCGATCTACTCACAGTGATGCTGGTAATGAAGAGGCTGAAGTTGTGAGAAAATCAAG GAGCAGGAGACGAGATGAAAGGCGTGGCCTACAAATTTTGTTTGATGATGAGCGGCATAAAACTGATGAAGAGGAAAGGA TAATAGATAGGCTACTGATCCATTATAGCAAAAAGCCAACCGCATCTGTGCCTGAAAAAGCAAGAAGAAAGTCCAGAAGT CGCCATACACATCAAAAGAGTGGAAGAGGAGATGAACCTGATGAGACACCAGACCTGATTTCTCAAACACCTCGATCAGT TTCCCTTCCTCATGAACAAACAGAAGCTGTGGAAGTTAACAAAGTAATTGCTCGTGCCGCTTCATTGCAGCCAGATAGAT CAAATGAAGCTCGGCATGTGCATCCCAAGCTACCTGACTGTGATGATTTAGCTGCTAGGATTGCGGCCTTGAGAGGATCT TAAAAAATCGAATTACATTAAATAAGTGCTTCTCCTTTACCAGCTTGATTGCGCTGTTAACGATCATCATGGTTTAGCCT CATGTACCGCTGGTGTTGTTGAAGGTTTCATGGTGGTGGTTTCATTGCAATTCGTTGATTACTCCAGAGCTGTAATCTGC CATGGCCATACTTTAGTTGGCTGGCAATTGTTCTAGCATTATTTTTTACTAATGGTGTCTATATACGAAACATCTTGGGG TGTGCTTTCACCTTTTATGATTGTATTAGCGTTTGAAACATAAATTGATGGTATTCTTATTTTCTACGAATTGAGGATAA AAGTAGTTGGATATGCAATATCGCGTCAAAGTCAATCCAATCCCACTTACAACTCCAAACTTGAATGTCGTTTTGTGCAC AACTATTTGGAAATTGGGTTAACTATGTTGTCTTTGAGAAATAGGGTCTAATTGATTATTGTTGTGAATGAAAAAACCAA ACCATCACTGTTATATACTCCCAAAAAGAGAGAACGGAAAACGTACCATTCCTAATTTGTAATTTTCCCCGGGCGAATTA AATGGTATCTGAGTACATTTTCAGAGCAAAACTAGCAAATGGACCATTCTGGCCATTATCAGAACTTATTAACAAGTTCA GAAACAAAAAGCCATTGCCCTTCCCAAGGACCATCACCTATCCCTTTACAAGATTCCTCATCCTTTCACCATCACCACCA CTCTGCTCTCCTTTCCCTCCCCAAAGGTAAAGTACTGTTTCCCGCCAAAAATGACCTTTATCTTCTCACTCTCCCTCTTT TTCACCGCCACAAAGTTCCACCACATGAAAGAAGAGAACAAGAAACACACATAACAGAAGTAAAGGGAAGGAACCAAAAA ATGAAGGGCACTTCCAAAGTGATAATGGGAGCAACCTTGGTAATGGTGGTAACCCTTGCCATTGTTCTAGCCCTCATACT TGTGCTGCTAGCTGAACTCTACTGTTCTCTCTTACTTCGCCGCCGCAAGCTCAGAAACACCAACTCCAACACACTTCCCA CCACCGCCACGACAGCCACTGCGCCTTCCCCTTCACACTCCCCACGACACTCTCCTCCTCCACCACCACCCTTCACCAGC ATTTATGCACAAGGGGTCCTCCAAGCTCCTAGAACCGTCCTTTTTCCTTGCACGGAACAGGACATGGCTGAACCAAAGAA GCAGGGGATTCATGTCCAAACGCAGGAATCAAATGCCAGCACACTTAGTGGCATTGGACTCGTTTCAATTTCACCATCAC CACTATCATCCTTCATCTCCAGGGCTCCTCCAAAGCCAGTTCATCAAGAAAAGAGTAGTGAGGGTGAAGAAGTTGCATGT GGTGGTGGTGGTGGTGGGGAGCACCTCGTGTACATTTCAAACCCCATTTATGAAAATGAAGAGGGTGAAACAAGTGGGGC AGCGAATACCCCATTTGAGACACCGGAGAGTTCACCTTCTCATTTCGAAAGAAGCTGTTCTAGTTCTGGGGATGATGATG ATGCTGATGCTGCTGCTGCTGCTGCTGCTGATGATGATGAAGCTGAACAAACATCTCCATACACACCTCCTCTGACTCCG ATGAAGAAGCTCCCTGCAGAGGGTTCCTCTGTTTCTCTTAGAGATGCTAGGTCCTTAGGTACTTCAGGCAGCGATTCTCG TAGTGTTAATGGTCCCTCTTCTTCTTCCTCTGCCTCCCCTTGTACTTCTCCTTCTTGGTGAATTTTATTCACCAATGACC TAGTTAGATTGTGAAAGCTTTTGTTTAATTTGTTTTTTTTTTTGGATCTCTTTTGAGGTTGTATAACTTAGCTCTAGTGC TAAATAACCTTATCCTAATGACCTAATCTAATTCACCTTGTACTTCTCCGTGTAGTGAATTTAACATAAGTGTTTGGTTA TTTTTACTTCGAAAAATGTTACCATGACACGTTCAATACTCTCATTCATTGGTTGAAGTTCATGCGCACTAAACTAC
CDS sequence (LotjaGi2g1v0215300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGACAGTTTGCTCGGTCGTGGATTCACCGCAAAATGCAAATCGTTGATCAAATTGACGAGGAATCGGATCGATGT GATAAGGAGGAAGAGGAAGGCGACAGAGAAGTTTCTGAAGAAGGATATGGCTGATTTGTTGTCGAATGGTTTGGATGTCA ATGCATACGGAAGGGCTGATGGACTCATTAGTGAGTTGACACTGTCATCTTGTTATGATTTTATTGAGCAAACCTGTGAG TTTGTGTTGAAGCACCTCTCAGTGCTGCAGAAAGTGAGTGGATGCCCTGAGGAGTGCAGGGCGGCTATCTCATCTCTGAT GTTTGCAGCTGCAAGGTTTTCTGATCTCCCAGAGCTACGTGATCTTCGACAAATATTTCAGGAGAGATATGGAAGCTCCC TGGAGTGTTACGTTAATCAACAGTTTGCTGCAAATATGAATTCAAAGTCTTCTACATTGGAGAAGAAGGTTCGCTTGATG CAGGACATTGCTTCAGAGTTTTCAATAAAGTGGGACTCCAAAGCGTTCGAACTGAGAATGTCGAAATCCTCTACTGTTGC ACAGGGCCACAACAGTGCTTTCAAGTTTAACCATTCAGTTGATGATAATAAACCATTACAAGGCAAGATTGCTACCTCAA AAGGAGTCAAGTATGAGGCTTTGCCAGAGAAAAGTCCTGACTATTCTGATAATAGGCACAAATTTCTGAATGGCAAGGAA GCGGTTGTCTCAAAAAGTGATGTGAATCAACTTAGTTCTAAATCCAAGCTTCCTGAAAATGGTTTCAAGCCGCCAAGTAG CTATGATGAAGTCAATCTCAAAAGAGTTAGCCATGGCAATCCATTACCGGGAAGAGAAGAGCTAAGTCATAAGAAGACTG ATAAAGGCTATTGCATGGAGGGTAGTATTCCAAAACAAATTGGACGCTCTTCTCAGGACGAGAGAGTGAAAGAGTTTGAA GGTGGTTCCAATCTGCGTGATACTTTGGGGAATGCCACACGAGTAAGAGAAAGCCAGGACACTGCCACTGCTAGGAAGTC TCCTAGCCACGTGGGACTTTTTTCAAGGAATAGTGTGAACGAGCCATTAGCTTTTAATCATGCTGGCCTACCTGATGATA GATTTGAGAGAAAAGTTCAAAAGGATGAAACTCCTAGGGGAAAGCCTAGCTACAGTAATGCCCTCCCACCTCCGTATTTA AAACCTAATTCTAAACTGAAGAGCAGCTCACATGGAACTGATTTAATGACTTCACATATTGACAGTAATGGAATCACTAA ATATCCTTCAATACATCAAAAGCCTGATGTCGCTTCTAAGCCGGAGAGGATCCAATCAGGTTTGGATAATTCTGAGCAGG ATTTACTGGGACATGCAAGACCGGGTAAAGAGGGTCATGAAAAAGAACTCTCGAATCACGAAGATGCTAAAGAAGTCCCT GTATTTAAACCAAAATCTGTGAGGCGGAAGCATTCAAAATCTCGATCTACTCACAGTGATGCTGGTAATGAAGAGGCTGA AGTTGTGAGAAAATCAAGGAGCAGGAGACGAGATGAAAGGCGTGGCCTACAAATTTTGTTTGATGATGAGCGGCATAAAA CTGATGAAGAGGAAAGGATAATAGATAGGCTACTGATCCATTATAGCAAAAAGCCAACCGCATCTGTGCCTGAAAAAGCA AGAAGAAAGTCCAGAAGTCGCCATACACATCAAAAGAGTGGAAGAGGAGATGAACCTGATGAGACACCAGACCTGATTTC TCAAACACCTCGATCAGTTTCCCTTCCTCATGAACAAACAGAAGCTGTGGAAGTTAACAAAGTAATTGCTCGTGCCGCTT CATTGCAGCCAGATAGATCAAATGAAGCTCGGCATGTGCATCCCAAGCTACCTGACTGTGATGATTTAGCTGCTAGGATT GCGGCCTTGAGAGGATCTTAA
Protein sequence (LotjaGi2g1v0215300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDSLLGRGFTAKCKSLIKLTRNRIDVIRRKRKATEKFLKKDMADLLSNGLDVNAYGRADGLISELTLSSCYDFIEQTCE FVLKHLSVLQKVSGCPEECRAAISSLMFAAARFSDLPELRDLRQIFQERYGSSLECYVNQQFAANMNSKSSTLEKKVRLM QDIASEFSIKWDSKAFELRMSKSSTVAQGHNSAFKFNHSVDDNKPLQGKIATSKGVKYEALPEKSPDYSDNRHKFLNGKE AVVSKSDVNQLSSKSKLPENGFKPPSSYDEVNLKRVSHGNPLPGREELSHKKTDKGYCMEGSIPKQIGRSSQDERVKEFE GGSNLRDTLGNATRVRESQDTATARKSPSHVGLFSRNSVNEPLAFNHAGLPDDRFERKVQKDETPRGKPSYSNALPPPYL KPNSKLKSSSHGTDLMTSHIDSNGITKYPSIHQKPDVASKPERIQSGLDNSEQDLLGHARPGKEGHEKELSNHEDAKEVP VFKPKSVRRKHSKSRSTHSDAGNEEAEVVRKSRSRRRDERRGLQILFDDERHKTDEEERIIDRLLIHYSKKPTASVPEKA RRKSRSRHTHQKSGRGDEPDETPDLISQTPRSVSLPHEQTEAVEVNKVIARAASLQPDRSNEARHVHPKLPDCDDLAARI AALRGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 294 | 294 | 2.9E-251 | ||
| PANTHER | 1 | 294 | 294 | 2.9E-251 | – | |
| Gene3D | 3 | 182 | 180 | 9.5E-47 | ||
| Pfam | 15 | 169 | 155 | 7.0E-42 | ||
| MobiDBLite | 246 | 600 | 355 | - | – | |
| MobiDBLite | 246 | 260 | 15 | - | – | |
| MobiDBLite | 280 | 298 | 19 | - | – | |
| PANTHER | 316 | 645 | 330 | 2.9E-251 | – | |
| PANTHER | 316 | 645 | 330 | 2.9E-251 | ||
| MobiDBLite | 326 | 362 | 37 | - | – | |
| MobiDBLite | 370 | 385 | 16 | - | – | |
| MobiDBLite | 403 | 429 | 27 | - | – | |
| MobiDBLite | 456 | 485 | 30 | - | – | |
| MobiDBLite | 496 | 546 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi2g1v0215300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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