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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0218700 |
| Transcript ID | LotjaGi2g1v0218700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TATA-binding protein-associated factor 2N; TAIR: AT4G28990.1 RNA-binding protein-like protein; Swiss-Prot: sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2; TrEMBL-Plants: tr|V7C3Z4|V7C3Z4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0218700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67361453..67365984) extracted from Lotus japonicus Gifu genome v1.2.
CACGATTATTTTTATTTTTATAATTACCACGATTATGCTTTATTTTTATTTTTTACGTCGTAAAGATAAACTACACTCAT TGTCTATTTCCGTAATTTCACAAGAAGAACAATACAAGCATATGCTCTAGGGTTTATATTCACCACTTGGTGATCGAAGG TGGATTAGAAATTCTTTTCCCACAACACAGAGCACGGTGCTATTGCTATGGCTTCGTCCAGGGACAAGGATTCAGCTCCG TCACACCACCACCAACCACCGCTCTTGAGCAGCCTCGTCGTCCGCCCCTCCCACACCGAGACCACCGCCGCCGCTGATTA CGAGTCTGGCGAACTCCACCGCGACCCTCCTCCCCCATTTTCCCGCTCCGATCGATTTCCCGATGACCCTGGTTTGTTCT CCTATTCCCTTCACTCCTTTACCCTAATGGTGCTTGTTGTTATCGGGTTTAGGTTTTTGAATTTCGATGAAGGTGCTGGA TTGGTTCGTTTATGTGATTTGCTTCAATTTATATGTAAAATGGAGTAGCACAGTAGTGATTGAAATGGTGCTGATTGGGA ATTGTTGAGGCTGGTTTGGTTCTGTTTTTTTGTTGTTTCTGCTTTCGAATAGTTTGCTTATGTGGTAGATTTTGTTTACA GTCTAAATTTTTGTTGAATTTTGTGGTTTGATAAGTATTGAATTTGATTGATGTCGTAATCTGATTATTGCTGACATTTT TGTTTCTATGTGCTGTCCTGCTATTGAAATGCATTTGTTGTTCATAGTTGGCGTCAGGCTTGTTAATAGTGCGTCGTAGC GCAATAGTGCTTGAAATAGCGGCGCCCTGAGGGTTCACCGCTATTTGCCGCTATAGCGCTGCAATAGTGCTTGAAATATC GTTTTTTGGGCTTGCCGCTACACTACGCTATCCGCCATTAACAACCCTGGTTGGTGTAAAGCTGAGTTCTGTTTACGTGA TTTTCAAGTGAAATTGAGTTGTTGCATTTGTTGTATTTGGTTTTTTTGGGGCTTAGGTGAGAGAAGATTGCTTCCAGTTC GTTGTTTTATTAATTTTTTTTTCCTTTCATGGTCTTGACTCTTGACCGATGTACATGCCGGTGTGGGTTTTGTTAGACCT TCTGTCTATTCATTTAATTCAGCCACACATGGATCTCCTTTCGATTATGCAGTGTCAACAGTGAATAAAATTTGCATTTG TGTGTTACAGCTCTGATGTTGCCTGCAAGATATTGGGCCTAGAGGAAGGCATGTTGCTGTGAACTCAGATTTGGGTCATG ATCTGGGAATGTTTTTTTATTTAAAATGGTTAGTAAGCGTGTTGGACGATGGAAATTGTCCATTCTGCTTGAACTTATGG GGGGTATTACAGCACGAACTCTATTGCACTGGTTCTCATTTTGCGGGGTCATGGTTATATGTTTGGTTTGGGATATTGTG AAGGTGAAGACAGTTTTGGGTTAATGGAATCTGGGGTACAATTTGAAGTTGTTGCCATACATGGCCTAACATGGCAACAC ACTAGAACATCAATGTGGTCAGAGGATTTGTAGAGGACAGAAATTGACTGTTACAAATTGTTCATGGTGAATAATCTTAG GCTATAACCAAAATATTTGTCTTCTATATCTAGGTTCTGCTGCAAGAAGTGGGTGGGTGGGGGAATTGATTTGATACCTT CGCAGAAGCTGACTTTTTTGTTATTGAACATCTGGTTATTTCAATTCAAGCTACATGTGTGCCGTTTACTTTTGGAATAA TCCTTGCAATGCTTGTTTTTGGCTGGTGGTTTTCATTTTACTTTGTGTGGGTTTTTCTTCTTTGGTTCGTTAATTAGGGA TGATTCAGATGGTTATTTATTTACAACATGGAGTCTGCTGAACCATAAATATTTTTCCTATTGATGCATTGACTGGGGGA CATTGATATGGTACAGCAAAAGGGATGCATATCATCTAAACATGTAGGAATGCACTTCTTTCTCCTGTTGTTTTGAAGTT AATTGGGGGCTAGTTTATTCTGAAAACGGGTGAATTGGTTGCTGGTATTATTGTACATGGCTTCAATGGGGTTTGTCTGC CTGGGCCATTTTTTTGTGTGGTTTGCTGCAAAGTCATGAACTATGTTGCTTGAGTCTCCCTTTGGCTGTCACAGCTGACT TAAAAAGATGGTTCCAGAAAGAGACCAACAAGTGGCTGATAGGGTGCATGGTATTAAACCTTGAGATCGTTGCACTTTGG TGGCAGTTGGTGGTGGTTATTCCTTGTGCCATATGTTCTGATAATGAGCTCTGGGGATTGATTACTTTATAAAGGGTGAA ATGACATCGGTCTATTGTTTATCATGTTGGATTAGGTTTTGTGGGAGTGCTCTTACTCTTACCGGGTTTTCAAGTCAGTT CTTATACTGCAGTTCCTAGGTTGCTGCTGCTCTGAATTTTAATTTGGGTTTGGTATTTCAGATGCCTAAGTTAAATAATT TGTGTATTTAACTATATCATGGTCTATGAATATTGAGAGATAAAAGGAATTGGTATCAAGGATATAAAGTGTGTAGCTTA TGTATTAGTGGGAAGCCTTGTTCATAGAACCTGTTTACATTATGGTAAATGGATCAGGTATTTGGGAAGGGACATTGAAG GTGTTGTCATGTGAACTTCATGAGCACTTCACACTTTTTAAATTTCCGTTATCAATGAGGAGGATGAGCCCTGTGTGGTG GTAGCCTTCCTTTGAAATGTCAAACTGATTATATGGCAGTTGCATGATCACGATGTTTTGGGTCTACTATAGATTGTGAT GCTAAATTTTCTCTTACTGCCTGCAAGTTGCTCAGACTTCACTGTCTTTGTTTTCCCAGGGTATAGAATCCGTGCAGGTT CCTCATCTCCTGTTCACCGTAGAGATGCAGATCATCGCCTTAGTTCTGATTACAATCACTTGTCACGAAGCCGTGGATAT GGAGGGGGGAGAGATCCTGGCAGACATCGAGACCCTTCACCCCCACATGCTCGAGGTAGAGTAGGTGGCAGGCCAATTGG TAGAGCATTTGATGGGCCTAGCTTCGGTCCTGGACATGCTAGAGGGGAAGGTAGAAATAATCCCAATGTGCGTCCTAGGG AGGGAGATTGGATTTGTCCTGATGGCCTGTAAGTGCTTGTGTTTCTGATTGTGATTAGACTTACATTTTCATTGGAATTG CTTGTTGGGCATACCTATCTGTTTATTTGCCTGAACTTTTTTAAATTTATGATTCTGGTTGTTAAACATCCAAGCAGGAG TAACAGCTAATCTGAATTGCTTGTTTTGATTATGCTTTGAAGATCTAATCTTTTACCTCTTCTATCTTGCAGATGTGGTA ATCTAAACTTTGCAAGGCGGGACCATTGTAACAGCTGTAATAGGGCTCGTCCAACTCCTGCTGGAAGTCCTCGAAGGGCT TATCCTTCTCCTCCACCACTTCATGCTCCTCAAAGACGATTCCCTGGTCCTCCATTAGACCATTCTCCAGAAAGGTCTAT GAATGGCTATAATAGATCTCCTCTTCGTGGGTTAGGAAGGGATGGCCCTAGAGATTACGGATCTGCTGCTGCTTTGCCAC CTCTGAGGCATGAAGGTCGGTTTCCAGATCCCTCTTTGCATAGAGACCGCCTGGATTACATAGAAGATCCTTACAGGGGA AGAAGCAAGTTTGATAGGCCACCCCCTTTGGACTGGGATAGTAGAGATCGTGTTAGAGATGTTCTCGCAAATGAAAGGAA AGGATTTGAGAGGAGGCCACTGTCACCTCCTGCTGCAAGATTTGATCGGAGGCCACTGTCACCCCCTGCTGCACGATTTG ATCGGAGGCCATTGTCACCCCCTGCTGCACGATTTGATAGGAGACCATTGTCACCCCCTGCTGCACGATTTGATAGGAGG CCACTGTCACCCCCTGCACCCCTTTTGCCGTCAGCTCCTCACCATCGTGGTGGTCGGTGGGCTCGTGACGTGAGAGAGAG AAGCCGTTCCCCTATAAGAGGTGGCCCGCCGGCAAAAGACTATCGCAGGGATATGTTTGTGAATCGTGGAAGAGATGATA GGCGTGGTGGTGTGGGACGTGGGAGAGTTGGAGGAATGTATTAGCTGCTGGTGTTTAGTGTAATTGGTTATGTAATATTT TAGCATCATTAGATGTTGAGACTTACATGTGAAGAGTTTGAGAGATTAGTGCCTGAATATCCACAATAGGACCAACGTAC TGGGTAACATTTTGACAGCATACACTGAATTGCATTATGGTATATCAGTTTTTTGGCTCCCAAACTTGGGGCGAATTTTG AACATGCTTTTAATGATATGATTGGATTGATGAAAATGATACAGCTTTATCCTATTCAACATTTCCCTTCTATGAGTTTT GGGTGTAAGGGATTCGTATAAGTATTTAGTAGAATGATTATTTTAGTTCATTTTTTTGCACGCTATTAATAATTGAATGT TCAAATATTTTAACCTTCAAAGAACCTTGTAAATGGAGGGTAACTCTATGCC
CDS sequence (LotjaGi2g1v0218700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGTCCAGGGACAAGGATTCAGCTCCGTCACACCACCACCAACCACCGCTCTTGAGCAGCCTCGTCGTCCGCCC CTCCCACACCGAGACCACCGCCGCCGCTGATTACGAGTCTGGCGAACTCCACCGCGACCCTCCTCCCCCATTTTCCCGCT CCGATCGATTTCCCGATGACCCTGGGTATAGAATCCGTGCAGGTTCCTCATCTCCTGTTCACCGTAGAGATGCAGATCAT CGCCTTAGTTCTGATTACAATCACTTGTCACGAAGCCGTGGATATGGAGGGGGGAGAGATCCTGGCAGACATCGAGACCC TTCACCCCCACATGCTCGAGGTAGAGTAGGTGGCAGGCCAATTGGTAGAGCATTTGATGGGCCTAGCTTCGGTCCTGGAC ATGCTAGAGGGGAAGGTAGAAATAATCCCAATGTGCGTCCTAGGGAGGGAGATTGGATTTGTCCTGATGGCCTATGTGGT AATCTAAACTTTGCAAGGCGGGACCATTGTAACAGCTGTAATAGGGCTCGTCCAACTCCTGCTGGAAGTCCTCGAAGGGC TTATCCTTCTCCTCCACCACTTCATGCTCCTCAAAGACGATTCCCTGGTCCTCCATTAGACCATTCTCCAGAAAGGTCTA TGAATGGCTATAATAGATCTCCTCTTCGTGGGTTAGGAAGGGATGGCCCTAGAGATTACGGATCTGCTGCTGCTTTGCCA CCTCTGAGGCATGAAGGTCGGTTTCCAGATCCCTCTTTGCATAGAGACCGCCTGGATTACATAGAAGATCCTTACAGGGG AAGAAGCAAGTTTGATAGGCCACCCCCTTTGGACTGGGATAGTAGAGATCGTGTTAGAGATGTTCTCGCAAATGAAAGGA AAGGATTTGAGAGGAGGCCACTGTCACCTCCTGCTGCAAGATTTGATCGGAGGCCACTGTCACCCCCTGCTGCACGATTT GATCGGAGGCCATTGTCACCCCCTGCTGCACGATTTGATAGGAGACCATTGTCACCCCCTGCTGCACGATTTGATAGGAG GCCACTGTCACCCCCTGCACCCCTTTTGCCGTCAGCTCCTCACCATCGTGGTGGTCGGTGGGCTCGTGACGTGAGAGAGA GAAGCCGTTCCCCTATAAGAGGTGGCCCGCCGGCAAAAGACTATCGCAGGGATATGTTTGTGAATCGTGGAAGAGATGAT AGGCGTGGTGGTGTGGGACGTGGGAGAGTTGGAGGAATGTATTAG
Protein sequence (LotjaGi2g1v0218700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSRDKDSAPSHHHQPPLLSSLVVRPSHTETTAAADYESGELHRDPPPPFSRSDRFPDDPGYRIRAGSSSPVHRRDADH RLSSDYNHLSRSRGYGGGRDPGRHRDPSPPHARGRVGGRPIGRAFDGPSFGPGHARGEGRNNPNVRPREGDWICPDGLCG NLNFARRDHCNSCNRARPTPAGSPRRAYPSPPPLHAPQRRFPGPPLDHSPERSMNGYNRSPLRGLGRDGPRDYGSAAALP PLRHEGRFPDPSLHRDRLDYIEDPYRGRSKFDRPPPLDWDSRDRVRDVLANERKGFERRPLSPPAARFDRRPLSPPAARF DRRPLSPPAARFDRRPLSPPAARFDRRPLSPPAPLLPSAPHHRGGRWARDVRERSRSPIRGGPPAKDYRRDMFVNRGRDD RRGGVGRGRVGGMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 152 | 152 | - | – | |
| PANTHER | 11 | 284 | 274 | 1.1E-39 | ||
| PANTHER | 11 | 284 | 274 | 1.1E-39 | – | |
| MobiDBLite | 38 | 62 | 25 | - | – | |
| MobiDBLite | 70 | 87 | 18 | - | – | |
| MobiDBLite | 97 | 112 | 16 | - | – | |
| Gene3D | 139 | 181 | 43 | 6.6E-15 | – | |
| SUPERFAMILY | 139 | 179 | 41 | 8.63E-13 | ||
| ProSiteProfiles | 148 | 179 | 32 | 9.642 | ||
| SMART | 150 | 176 | 27 | 1.7E-5 | ||
| ProSitePatterns | 152 | 173 | 22 | - | ||
| MobiDBLite | 175 | 251 | 77 | - | – | |
| MobiDBLite | 184 | 204 | 21 | - | – | |
| MobiDBLite | 295 | 414 | 120 | - | – | |
| MobiDBLite | 363 | 406 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0218700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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