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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0220300 |
| Transcript ID | LotjaGi2g1v0220300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT4G29080.1 phytochrome-associated protein 2; Swiss-Prot: sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27; TrEMBL-Plants: tr|V7C7G7|V7C7G7_PHAVU Auxin-induced protein; Found in the gene: LotjaGi2g1v0220300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67561472..67565300) extracted from Lotus japonicus Gifu genome v1.2.
CACCACTCACATTGTCACTCACTACTATCAGTGTAACAGAACACTACTGAGTGTGTTTTTTTTTCAGTTTATATACAAAC AACAAACAGAACACAAACCTCAGAGAAGCTTCTCCTCATCAAAACCTCATACTTTTCACTCCCACTGCTGAATTCTGATT CTTTAACACCAGTTTCTGTTTCTTTCTCTCTGTTTTCTATATTTTGAGTGTAAGTGATACTGTAGTAGCTGTGTAAGTTG AAGTGGGGTGTTGATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCATAGGAGAGGTTCATAATACAATGGAAGGCTCTG AGAAGTTTGCTGAAAGGACTAGCAGTGGCTTAAACCTCAAGGCTACTGAGCTCAGGCTTGGGTTGCCAGGCTCTGAGTCA CCAGAGAGGGAACTTGGTGTGAGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGATGCAATTGATGG AGGTTCTGGGAAGTGGGTTCTCTCTGGAAATGGTGGATCTGAAGTGGGTCTGGGTAAAGATTGTAGCTTGTTTTCCCCTA AGGGTGTTGGTGCTGCTGGGAAGGCTCTTGCTATTGCTGACTGCAACAAACAACAACAAGCATCTGTTGGGAAGGATAAA GTAACTCAGTCTATAAAGTCTCTGAATGAGAAGAAGGCACAGATATCTGCACCTGTTGCAAAGTAGCATCATGTTCTTTA CTCTCACCTTTCTTCTTTCTTGCTGTTGGGGAAAAATTATGCTGTTAATTTTGTTTTTCTGTTTTTGCTGTAATTTTTTA CTTTTGTTGTTCATGCATGCCCTTGGCCTCTATAATTTACTTGTTTTTGTGTGTATGTTTACAAAATGTTAGAAGCAAGA AGAAATTGGAATGATTTGGAGAAAGAGGAAAGTGTTTTTCACTTTTATATTTCTTTTTAATTCTATTGGGTTGAAATTTT AAGTAAAAGGGAGGGAGGAGAAAATCTATCAAGTTGAGACTTTGATATCTCTGATTCTTTTTGTTGATAATTATCTTGTC ATGTTGGTCTCTAGTTTTATAAAAGCTGTTGTTAATTCTGTTATATGTAATTTAGAGGATGTTGTTTCTATGTTAATCAT CATCTAACTGTTAGTTTGGTTGTTCTGTACCTGTTGAACATGAATTCGGATTGAAGTCCTTTAAGTGTTTTGTGTAATAC ACTAAAAAAACAACTTTCATGGTAAAAGTTATTTTCCCCCTAGGCCTACTGGTGTTTTCATCTTTGGATCACTCTTAGAC ACCAGAGTAAGAAACTGTGGTGGTTGGATCAGAATCCTCTCAATTGTAAAAAAAAACTTGACCATGACCATTTTCGCCAT CTAACCATTGACGGTGAAACTTGACATGTTCAAGTTTTTATGCAATTGTGAGGATCCATTTCCGTCATGGTTAGATTCCA TTATTGTTGAATTATAATCAGTTAATCACTGACTCAGAAAGTTGTATCAATCAATCTCCTTGTTGTATATTGTAATGTTG TATTCTTTTGTGAATCAGGGAACAGGTTGTAGGATGGCCACCAATCCGCTCTTTCAGGAAGAACTCAATGACCTCTCAGC CTCAAAAGAATGATGGTGATGTAGAAGCCACATCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTG AGGAAAGTGGATCTTAAACACTTTGTCACTTACAGGGATTTATCTTCTGCGCTGGAAAAGATGTTTAGTTGTTTTACTAT CAGTGAGTTATTTCATTACTTTCAAACATTTTCTTACTCTTTCACTTGCTTATGCATCGCTTTAACTATTTGTTTTTGCT ACTGTTTACTGTCTTTGACTTTGATGAGATAAATGAAAATAATTTATCCTGATCAGAACTGGCCTCCTTTTAGATCAATA TGATATTTTATCAGGATCCTAAGTCTTTGAATGTCACAGGATCAGGCTGGTTGTTTCCATGAGCTGGGGAAATTTTACAG GGAGTGCTATATATGAATAGGTCAACTAATTCTTTAACAATAAAATGTTCTGTATTTGAAGATTCTTATGATGTTTTGAT CAATGAAAAGTGCAGGTCAATGTGGCTCTCATGGAGCTTCTAGTCATGACAAATTGAGTGAAAGTAGATTGATAGATCTC CTTCATGGTTCAGAATATGTCCTCACCTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGTGATGTTCCATGGGTGTA AGTGTATATATGTTTCATAGTGTTGTGCATTTTCTGATTTAATTTCTACCTAACATTTGTTCTGGTATTTAATAGGCTTA ATTACAATTTTGGTCCCTATACTTTCAAAAATGCGTAATTTTGGTCCATATAGTTTCAATTGCTCAAATTAAGTTTATCT ACTTTCAAAATTATACAAAAATGGTTCAATGTTCAAACATTAACTTGTCATCGAATAAGTAGCGAAAAAAGTTGATATGG ATCATAATCTTTTACGTGAATGACATGTTAAGATGATTTATATCATTTTCCATATCAAAAACTGTAATACATGGCATATG TTCCTGTTAGTTTTTGGAGGACAAGTTAACATCAGGATCAAATTTATTCGATTTTGAAGATAGAGGGACTTAGTTTGAGC GAATGAAACTATAGGGACCAAAATTACAAATTTTTGAAAGTATAGGGACCAAATTTGTAATTAAGCCCATTTAATAATTA CAAAGTATAAATCTACTTTGAGTTAGTTAATATTAGATTTTCACAAAGATATTAATTTAACTTATCTGAAAATTTCAGAA TCAACAAAGGACAGATTGATAGGTATTTAGTACTGAAGTGATCTTATTGTTCTGGTTTTAGGATGTTTACTGACTCTTGC AAGAGGTTGAGGATAATGAAAAGTTCTGAAGCTATTGGACTTGGTGAGGCTTACACTTATTATAATCTCTGCTTTCTATT ATATCTCGCTGCATTTAAAAACTCGTGAATCGTCTACAGAATTCAGTTTAATAAAAGCCCAATTGCACTCCACTAGCTAT ACTGCTCAATTATTTGAATAAAGCTAGCTATACGGTAACATCAACTACGCTTTCAAGAGATAAACATAATAAATGTGTAA AGCCACAGAATTGCATGCAGATTTTCACATATGCCAAACTCTAATGGTATAGAAATGGCTGAGGAATTTTTGGAATTGAT GGACTCTAGTAGCATATCTTTCTTCCAATATGAATAAACATTCTTGAACTCCGTTTTTCTATTTCATCTTGCAATAGTTT CTTATAGAGAAATCTCAGTAGAACACTCATTTCAGTACAGTTTTAGTTATAACAAGGGAAATGCCTATCACCTCTTTAAG GTTTTATACTATCAAAACTAATGGAAGTTCACTTTATAGCATCTCTTTTACTCTAAAAGAAATCACTAGACTTGTCTTTA TTGGTTGTGCTTATCTATCTGATAGTGATTCCTGCAGCACCAAGGTCTATGGAAAAGTGCAAGAGTCGCAACTAGCCAAA TGCTACTGATGCAGCTGGCAGAATGATGAGTATTGTGTTTTAAGACAGAGGCACTGGCAGGGCATAAACTGGGGCTTCTC TTCATTGCTTATGTATCAGTAAAATCCTATATATCGCAAACAGGATCCTAGTGGCCTAAACGTTTTAATAGGCAAGATAT GTTTGTTGTAGCCATTTAAGGTTTCTCTCCTTGAAAGTTACTATTAGTGAGCATTTTGATTTTCATGACATGGAAAAGAA AATAACATGGTACTTTATTTTGTTTAATAAGAGAAATTTATTGTGTTCCCCACATATGGTTTAGTCTAT
CDS sequence (LotjaGi2g1v0220300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCATAGGAGAGGTTCATAATACAATGGAAGGCTCTGAGAAGTTTGCTGA AAGGACTAGCAGTGGCTTAAACCTCAAGGCTACTGAGCTCAGGCTTGGGTTGCCAGGCTCTGAGTCACCAGAGAGGGAAC TTGGTGTGAGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGATGCAATTGATGGAGGTTCTGGGAAG TGGGTTCTCTCTGGAAATGGTGGATCTGAAGTGGGTCTGGGTAAAGATTGTAGCTTGTTTTCCCCTAAGGGTGTTGGTGC TGCTGGGAAGGCTCTTGCTATTGCTGACTGCAACAAACAACAACAAGCATCTGTTGGGAAGGATAAAGTAACTCAGTCTA TAAAGTCTCTGAATGAGAAGAAGGCACAGATATCTGCACCTGTTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCCGC TCTTTCAGGAAGAACTCAATGACCTCTCAGCCTCAAAAGAATGATGGTGATGTAGAAGCCACATCTGGATGCCTTTATGT AAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTTAAACACTTTGTCACTTACAGGGATTTATCTTCTG CGCTGGAAAAGATGTTTAGTTGTTTTACTATCAGTCAATGTGGCTCTCATGGAGCTTCTAGTCATGACAAATTGAGTGAA AGTAGATTGATAGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGACAAAGATGGTGACTGGATGCTGGTTGG TGATGTTCCATGGGTGATGTTTACTGACTCTTGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCTATTGGACTTGTGA TTCCTGCAGCACCAAGGTCTATGGAAAAGTGCAAGAGTCGCAACTAG
Protein sequence (LotjaGi2g1v0220300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVPLEQGYVGIGEVHNTMEGSEKFAERTSSGLNLKATELRLGLPGSESPERELGVSMLKSLVSGAKRGFSDAIDGGSGK WVLSGNGGSEVGLGKDCSLFSPKGVGAAGKALAIADCNKQQQASVGKDKVTQSIKSLNEKKAQISAPVAKEQVVGWPPIR SFRKNSMTSQPQKNDGDVEATSGCLYVKVSMDGAPYLRKVDLKHFVTYRDLSSALEKMFSCFTISQCGSHGASSHDKLSE SRLIDLLHGSEYVLTYEDKDGDWMLVGDVPWVMFTDSCKRLRIMKSSEAIGLVIPAAPRSMEKCKSRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 298 | 277 | 1.7E-123 | – | |
| PANTHER | 22 | 298 | 277 | 1.7E-123 | ||
| Pfam | 38 | 292 | 255 | 1.9E-83 | ||
| Gene3D | 178 | 297 | 120 | 6.3E-42 | – | |
| SUPERFAMILY | 182 | 285 | 104 | 2.4E-22 | – | |
| ProSiteProfiles | 184 | 286 | 103 | 25.438 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0220300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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