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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0224500 |
| Transcript ID | LotjaGi2g1v0224500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Senescence/dehydration-associated-like protein; TAIR: AT4G15450.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|F4JNX2|SDEH4_ARATH Senescence/dehydration-associated protein At4g35985, chloroplastic; TrEMBL-Plants: tr|A0A151T2Z2|A0A151T2Z2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0224500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68072925..68076098) extracted from Lotus japonicus Gifu genome v1.2.
TGAAATTAAAGAACAATACAGAAAAGAATATCAGGGCAAGCTGAGATGCTCCCTACTGCAGATTGTTCAACAAGCTCTCC ATTTTTTTTTATTTTCTCATACATTCCACTTCTCCACCCAAAGTCACATTACATTAACCATGATACCATCTTCTTCACCA CCAATCACAAGGAATAGAATAAATCCACCAATAAAACCACAAACTTTCCCTATCACATTTATCTCGATTCACATCCCATT CAAGCGGTCCCAAGAAAGAAATAGAACAAAAACAGAGAGATGGGTTGCAGTGGCTCCAAACCTGAAGAAGAAGAACCAAC CATGATGAGAACCTCCACGCTTGTTCCTATTGCTGAATACTCAAAACCCAAGAACCTGATCAGACAAGAAGTTCTGATCC AAATTCCAGGATGCAGAGTTTACCTGATGGATGAAGGACAAGCTGTTGAACTGGCTCAAGGCCAGTTCATGATCATCAAA GTCATGGATGATAACGTATCACTTGCCACAATCATCAAAGTAGGGAACGGTGTCCAGTGGCCACTGACAAAAGATGAGCC GGTGGTGAAGGTGGATACTCTGCATTACCTGTTCACGTTGCCTGTGAAAGATGGAGGATCAGAGCCTCTGAGCTATGGTG TGACGTTTCCAGAGCAGTGTTATGGGAGCATGGGGTTGCTGGAATCTTTTCTGAAGGATCACTCTTGCTTTTCTGATTTG AAAACAGGGAAGAAAGGTGGTCTTGATTGGGAGCAGTTTGCTCCCAGGGTTGAAGATTACAATCACTTTCTGGCTAAGGC GATTGCTGGAGGGACTGGTCAGATTGTTAAGGGTATCTTCATGTGCAGTAATGCTTACACTAACCAGGTTTTGTTTTTGA GTCCTTATAAGTAAACATTCAATTTTCTTTACCCACATCGATCTGACATATCGATTAGCGGTGGTTCGTAAACATTGCAC CGCTGCTAATGCATATGTTAGATGGATGTCGAGTAAATATATGGCCACTAATCTTTTTTCCTCTGGTTTTTTATTCCTCT CTCTCTTTCAATTAGATATTTATCATGTTTTCTAGTTTTTAATTTATATTAGGAAAATAATTCATTCATATCTCAATTTG AGTTTTATCTTAAGAGAAATAGAAATATAAGAGAGATTAGTGATAGATAATGTGGATATGAAAAAAAATGGGGAAAAAGA TATTTTTTTCACACTTTAAGTTTACTTACACCAAATGAGATGAAGGGAAAAAAACGAGATAAATGAGAGATTTGTCGCTC TATAGTCATCGTACTAAGTGGTAAGGGCTAACCAATGAGTTTTTTTTTTTTTTTTCATTCTGAAGTGTTGGAAATTTAAC CTCTCAATCACCTGCTTAACAGACTAAAGCTAAATATTACTACTAATTAACCCTCAACTTGGTACTTGTTTTATTTTATG AACCTTGTAATTTATTCAAACTAGCAAAAATTCATTTGTTTGTAGCTGGGACACTGATAATGTTTGTCAAGTTGTGACCC ACATAGGAATTATGATATTTTCATGTGGGTTTAGATGGGCTTGGCTCTCACTTCTCAATAGCCCACCCCTTTAATTGAAA AGTATCCACTAAATCATTATGTAAAACTTGTTTGGAAAATCAGGTCCAAAGTGGAGGGCAAACGATCCTAACTGATAACA AAAATAATGGCTTGGTTAGACAAAGTGTGAGCAACAACAAAACTGCTGATGCCACAAAGAAGAATGCGATGAACGAAAAC CTCAAACGGTATTTCAAAGTTCACAAGTGAACTTGAGATTAATTATGTTCTTTTAAGTCATAAATACAAACTGACTCTAA TTAATTTTCATGTTTGCCAATCTAGTGTGAGACAGCTAACAACTATGACAGAAAAGTTATCCAAATCTTTGCTTGATGGT GTTGGAATAATGAGTGGATCAGTGATGGCTCCTGTGCTTAAATCTCAACCAGGACAAGCATTCCTGAAGATGCTCCCTGG AGAGGTGCTTTTGGCTTCCCTTGATGCAGTCAGTAAGTAAACTTTCTAACACAGACATCTTTCACGGGAGACAATTCAGT TCTAGTCGAGAACATTTAAATCCTGATGTGACTAGTTCTCCCGACACGTATTTTTTCCATACACAAAATTGGTTCACAAA AGATCTTATAAGGCTACCATGATCTTGATTATGAAATTATCATACTTCAACAATTTATATACCAATCTCAGTTCATTAAA TAAAGGGCACTACCTAATCTTAATTATGGTTTTTATTTTCAAACAAGCAGCCTTAACTTTATTTCTATGTTTTCTCTTAA TGCCTCAGACAAGGTGTTTGAAGCAACTGAAGCTGCTCAAAAGCAATCCCTTTCTGCCACCTCCCAAGCTGCCACCAGAA TGGTTTCTAACAGGTAAAAAAACATTACACTGCTATGAACAATATAGCAGAACTTAATAACTGGACTACATTGGCAAATT ATGTGTTTTTTAGATTTTTTTTTTTTAGGCATCTATCCAACCCATATAACATTTTTTACCTTTATGTTTAGCTTAAATGT ACTTTTGCTTTCTATAGTACCACTAGACTGTCCAGACATAAGTAAAATAATACTTTTACACTCCAATTCCATTCTACACC AAGAGTGAGATAGAAATAGAAGGGAGAGATATGATCGGCCGTGATGATCTGACAGGATTGCCCAACATTAACTTTTGTAC TATGTATCCAAGTAAACAGACTTGCCTTGCTTGTTTATCAATGTATAAATATAAGTTCACCTTGCATCCTTGGGTAACAG ATATGGGGAAGAAGCAGGGGAGGCCACAGAACATGTGTTTGCAACAGCAGGACATGCTGCAAACACTGCTTGGAATGTTT CTAAGATACGGAAGGCCATCAATCCAGTCACTCCAGCAAGCACTGCAGGAGGAGCACTGAGAAATTCTATCAAGAATAGA AATGTTGGATAATAAGATCCATTTATGTGTGGCTTTGTATTTGACAAAGGTGAAGGCATAAATTGTTACCTATATATATG GCTTTCTCTTTTTGGTTGTTATATATGTAAGTATTGCTGTATTGGTCAGCAGCAAGCTGGCTAGAATATGAAAATGATCT TGTATGAAAAAACTCCAAATATAAAAGAACAATAGTGTTTCCTTTTTCTTTCTC
CDS sequence (LotjaGi2g1v0224500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGCAGTGGCTCCAAACCTGAAGAAGAAGAACCAACCATGATGAGAACCTCCACGCTTGTTCCTATTGCTGAATA CTCAAAACCCAAGAACCTGATCAGACAAGAAGTTCTGATCCAAATTCCAGGATGCAGAGTTTACCTGATGGATGAAGGAC AAGCTGTTGAACTGGCTCAAGGCCAGTTCATGATCATCAAAGTCATGGATGATAACGTATCACTTGCCACAATCATCAAA GTAGGGAACGGTGTCCAGTGGCCACTGACAAAAGATGAGCCGGTGGTGAAGGTGGATACTCTGCATTACCTGTTCACGTT GCCTGTGAAAGATGGAGGATCAGAGCCTCTGAGCTATGGTGTGACGTTTCCAGAGCAGTGTTATGGGAGCATGGGGTTGC TGGAATCTTTTCTGAAGGATCACTCTTGCTTTTCTGATTTGAAAACAGGGAAGAAAGGTGGTCTTGATTGGGAGCAGTTT GCTCCCAGGGTTGAAGATTACAATCACTTTCTGGCTAAGGCGATTGCTGGAGGGACTGGTCAGATTGTTAAGGGTATCTT CATGTGCAGTAATGCTTACACTAACCAGGTCCAAAGTGGAGGGCAAACGATCCTAACTGATAACAAAAATAATGGCTTGG TTAGACAAAGTGTGAGCAACAACAAAACTGCTGATGCCACAAAGAAGAATGCGATGAACGAAAACCTCAAACGTGTGAGA CAGCTAACAACTATGACAGAAAAGTTATCCAAATCTTTGCTTGATGGTGTTGGAATAATGAGTGGATCAGTGATGGCTCC TGTGCTTAAATCTCAACCAGGACAAGCATTCCTGAAGATGCTCCCTGGAGAGGTGCTTTTGGCTTCCCTTGATGCAGTCA ACAAGGTGTTTGAAGCAACTGAAGCTGCTCAAAAGCAATCCCTTTCTGCCACCTCCCAAGCTGCCACCAGAATGGTTTCT AACAGATATGGGGAAGAAGCAGGGGAGGCCACAGAACATGTGTTTGCAACAGCAGGACATGCTGCAAACACTGCTTGGAA TGTTTCTAAGATACGGAAGGCCATCAATCCAGTCACTCCAGCAAGCACTGCAGGAGGAGCACTGAGAAATTCTATCAAGA ATAGAAATGTTGGATAA
Protein sequence (LotjaGi2g1v0224500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCSGSKPEEEEPTMMRTSTLVPIAEYSKPKNLIRQEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSLATIIK VGNGVQWPLTKDEPVVKVDTLHYLFTLPVKDGGSEPLSYGVTFPEQCYGSMGLLESFLKDHSCFSDLKTGKKGGLDWEQF APRVEDYNHFLAKAIAGGTGQIVKGIFMCSNAYTNQVQSGGQTILTDNKNNGLVRQSVSNNKTADATKKNAMNENLKRVR QLTTMTEKLSKSLLDGVGIMSGSVMAPVLKSQPGQAFLKMLPGEVLLASLDAVNKVFEATEAAQKQSLSATSQAATRMVS NRYGEEAGEATEHVFATAGHAANTAWNVSKIRKAINPVTPASTAGGALRNSIKNRNVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 377 | 377 | 4.9E-197 | – | |
| PANTHER | 1 | 377 | 377 | 4.9E-197 | – | |
| Pfam | 175 | 354 | 180 | 1.2E-46 | ||
| MobiDBLite | 359 | 378 | 20 | - | – | |
| MobiDBLite | 363 | 378 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0224500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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