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IPR009686 is a Senescence/spartin-associated, C-terminal.
<p>This is the AAA ATPase domain found at the C-terminal of plant senescence-associated proteins and spartin. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours, after the flower opens, and it is believed that senescence proteins produced around that time have a role in this program [[cite:PUB00012915]]. This domain is also found at the C-terminal of Spartin, a protein from higher vertebrates associated with endosomal trafficking and microtubule dynamics [[cite:PUB00053590]]. Spartin functions presynaptically with endocytic adaptor Eps15 to regulate synaptic growth and function. Mutations in human spartin gene cause Troyer syndrome, a hereditary spastic paraplegia [[cite:PUB00097767]]. This AAA ATPase domain similar to other AAA proteins contain an α/β nucleotide-binding domain (NBD) and a smaller four-helix bundle domain (HBD) [[cite:PUB00050561]]. Uniquely among AAA structures, spastin has two helices (N-terminal α1 and C-terminal α11) that embrace the NBD [[cite:PUB00050561]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Senescence/dehydration-associated protein-related isoform 1 [Theobroma cacao] gi|508783399|gb|EOY30655.1| | 5 | ||
| – | ERD7 protein [Medicago truncatula] gi|357483827|ref|XP_003612200.1| | 4 | ||
| – | Senescence-related protein [Camellia sinensis] gi|198400319|gb|ACH87168.1| | 4 | ||
| – | Senescence/dehydration-associated-like protein; TAIR: AT4G15450.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|F4JNX2|SDEH4_ARATH Senescence/dehydration-associated protein At4g35985, chloroplastic; TrEMBL-Plants: tr|A0A151T2Z2|A0A151T2Z2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0224500 | 5 | ||
| – | Senescence/dehydration-associated-like protein; TAIR: AT2G17840.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|O48832|ERD7_ARATH Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic; TrEMBL-Plants: tr|A0A151THU6|A0A151THU6_CAJCA Spartin; Found in the gene: LotjaGi2g1v0380100 | 5 | ||
| – | Senescence/dehydration-associated-like protein; TAIR: AT2G17840.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|O48832|ERD7_ARATH Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic; TrEMBL-Plants: tr|A0A072UN80|A0A072UN80_MEDTR Senescence/dehydration-associated-like protein; Found in the gene: LotjaGi3g1v0521700 | 5 | ||
| – | Senescence/dehydration-associated-like protein; TAIR: AT2G17840.1 Senescence/dehydration-associated protein-like protein; Swiss-Prot: sp|O48832|ERD7_ARATH Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic; TrEMBL-Plants: tr|A0A1J7FZW4|A0A1J7FZW4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129700 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 14.29 |