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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0231300 |
| Transcript ID | LotjaGi2g1v0231300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69062426..69070180) extracted from Lotus japonicus Gifu genome v1.2.
CTATGTTTGTTTTCATGAAGTCATAATAGGTTGTGTAAAACATGGTTGTCAATTTGACCCAACACAACACAGAGAGAGAG AGAGAAGCGTCGGTGGTGGTTAACCGCAGGTTAAATGTTTCAACACAAGAGGCACAGGAATTACGAGGAGACAGAGAAAA AAGAAGAAACTCTCTGTTTTTTTCCTTGCTCTTTGTTATTTTATATATAAACACACACACACACACAACCATTGATTAAG GAAGAAGAAGAAGAGAGAAAAGTGTAGAAGGGGCATTTTCAGACAGAGCAGAGCTACAGCCATGGCTGAATCCGTTTCAG TGGGAATGGAGAGGATCTATCTCGGTGGAAAGGTTTACTCTCATCCAAATGGGGTGCTTTTTCTGGTTTTCTTATGATAA AAGGAGGAAGAAGGATAGTTTTTAGCTGCTTATTTCATATGAATTCACTGGGATGATTTGTTTCTTATCTTATTTTGTTC TTCCTTTGAATATTCTTAAACCTCTCCAATTCATTGGGATTCTAAAGATTTTTACATGGCAGATTGATGATCTTGGTATT AATCCCTATATGCCAGCCAGATAGTTTTTGTTCTTTCTTCCTCCTTGCATTGAGCTCTTGCTTCTTACAATATTTGGTCT TCTTATTGGATTTTCATTCGGTTGTTGTTTTAGAATTCAATTATTTCTACTTTCAAACTTCTGTCAGGTTTTCCTATATT AATTCAATTTTAGCTTGTTACTTGTAAGTATAACACAGACATGTTGAAATATGAGTTTTTTTTTTGGAAGAAATGAATTT TAGGTTTGCAGTATTTGATGTTGTAGGAAATTTTCTTTTCATATGATATAACATAGTTGTATTTTTCCTTTTGCTTTTAT TCTTCTTCCTTTTAGTTTTTTAGGCGGGGTCTAGTCCTTTTTTTTGGAAAAAAAAATCATGTTTCTTATATGATGATGTT CATTGCTTTGGAGGAATTGGATCCTTTGTGCTTGGCTTTTCCTTCTCTTTGGTTCTTTCCTGGTGCACTACAGGCTATAA GAATCTTAGCTATACCTTTCTTGTCTTTTGACTCATTATTATACGTTGGATAATTATAGCTGTTGCTTTATAATTTATAT ACGTGTTAGTTATTTATTAGGTCAGGTGCTATTCTTCTTTTAAAAGTTTTAAGATACTGTCCTTATCTTCACTAGCTTCT CCTTGTTGTGTTCATCTACCATACAATGATTGGAATCCGGAAGTACTTATATCGTTTATCCTTTTAAAATTCATATGTGT ATGCTGATGCTTAGTAGTTAGGGTTGTCCAACAAAAGTTTAAGTGGCACATGGGTAGCTATGAAGGGCAAAGGGCGAACC TGGTGCTTTAAAGCTCCTGCTATGTGCGAGGTCCAGAGAGGGGCCGAACCCACTTTGTGGATCTAATGTAGACAGTCTTA CCTTGCATCAATTTTGCAAGAGACTGACTCCATGACTCGAACTTGTGACCACAAAGTCACATGGCAGCAACCTTACCATT GTGCTAAGACTCGCCCTCTCACATGGAGCTATATTAGGGAATAAATAGTTTGGAAAAGTTTAACATGGACTACTCTAATG AAGTGCATACAAAATAAAGAATATCCTTTATTCTGAAAAAATGTTTCTTTTTTCACTGTGAAAGTTAACTTCAATACCTG TGCTTTTGTTTTGTTTCTTCTCAGGTTCAAATTTTCTCCTGTGTTGTATCCTAAATGATTTTTAGATTAATATTTCAGGA ACATCATATTCGGACAGGCTGTGGTTCTGTATCTGTCATAGTCTATGGGGATCAACACAAACCAGCTCTTATCACTTATC CGGATTTAGCATTAAATTGTAAGTTGATGCAGTTCATTTTCTTTTAGCCAAATACTCTTGAGGCAGATATGCTTTAATCT ATCCTCTTAATTGAAGCATAATTTACTTCTATTCATTGTGGCAGACATGTCTTGTTTCCAAGGATTATTTTTCTGTCCGG AGGCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAGTCCTCCTGGGCATGAGGTTTGTATGTTTGATTAA CTTGAATTGGATGTACTTTTAATTGCATTTAGTATTGAATATCATTGTTCACATAGTTTATCTGGAACTTCCACAAGAGT TCTTGCAGTTGGGAGCTGCTGCAATTTGTCCTGATGATCATGTCCCTTCTGTTGAGGATTTAGCAGATCAAATAATTGAA ATTCTCAACTATTTTAGGCAAGTACATTATTATTACTGAGGTCACTTTTTGAACTGTTCGATTTATTTGAGAATACATTC ATGATTCTATGCGTAAAAAGGTTGTGATCTACTATTGTTTTTTTTTTTTGAACTTTACTATTGTTCTTCTTGAAGCAATA TCCTAAAATAAAAGGTAGTAAAAATGCTCTTATTAAAGGAACATCTAATGTCTATGATATACTTACTAATTATATGAATT ATTTACTTCTCCAGGCTTGATTCTGTGATGTGTATGGGAGTAATGGCTGGTGCTTATATCCTTTCTTTATTTGCAGTATG TATCCCATTTAGTTTGAAGGGGGGGAAACTGCCCTGTTTAACCAACACTTTCATTAATGCTTAGAGAGTTTTTAATATGA AGTCAATCTTATCGATTTTGTTCTTTTTCACTTCTTCGACACAGATTAAATATAGGGAGCGTGTTCTTGGGTTAATACTT GTATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATGGTTTTACAACAAGGTTCCTTTCAAATGCTCACATTCTATGCA TTTATGAATTCCTTAATTCAAAAACATGGCCTAAAACTGCTTCTAATTTCAGGTCATGTCAAATTTGTTATATTACTATG GTGTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGATACTTCAGCAAGGTATTATAGTGCGAGGTTCTTAGCCCTTTT GTATTTGCTCTCTTATTTAATATGTTCTGAGGTTTCCTTGTCAACTTTAACAGGACGTTCGTGGTAATGCTGAAGTTCCG GAATCAGAGCTAGTTCAAGCTTGTAGAAAAGTCAGTGCTAAGCTAATTTAGTTTCTTCTCCTGCACTTCCCTATAGCTTA AATGTGATTGTTATGTCCTTACTTCTTTATTTTTGGGTGTATTTGCCTCACTTATCACTGGTTCCTTGTCATGTCTTTTC TTTTCCAGCTGCTGGATGAGAGAAAGAGCATCAATGTCTTTCGGTTTCTTCATGCTATTAATGAGTAAGATCTGCTACAT GGTTACCTCAACATATTTAACTATTTACTTATGTGCACTGCCTCTGGTAGTTTGAGTTACCATATTTATGTGCTCTACTT TTGTGTTGCCGACTTGCAGGAGACCTGATATAACAGATGGATTGAAGACGTTAAAATGTCGAACGCTTATTTTTGTCGGG GACAGTTCTCCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAGGAGATATAGTGCCTTGGTTGAGGTATG AAATTGTGAAAGTTCGGATTTTTGAAGGATGTACATAACATCCATGTTAATAACAAGAAAGTATACCTAAAAGGCTTGAC ATTGGATATATGGGTTTTTCATGTATTTCTGGATCCACGTGATTCTTAGCATGTTTGGATCAGTTCTTTTTCATCAAAAT CAAATTCTGAAACCTAGAAACTTCCCCATAATTGATTCTGACTTTAGAATCAATTGTAGAAGAATTTCCGAACAACAGTG TTGATTATGATAAATAACAAAATATGAATGCATGTAACATTAGTTACAAGGCCTAAGATAGCATGGAAGTTTTGCATATC ATTCATTATTTGAAAGACAACATCTGTGTTGATATGGCAGGTCCAGGCTTGTGGATCCATGGTTACAGAGGAACAACCAC ATGCAATGCTGATTCCCATGGAGTATTTCTTAATGGGTTATGGATTGTACAGACCAAGCTTTTTCAGTGACAGCCCAAAA AGCCCACTTAGCCCATCTTGTATCTCTCCAGAGCTTCTTTCCCCAGAAAGCATGGGATTGAAGCTAAAGCCTATTAAGAC ACGTGTTTAATTGGAAGTTTGACAAGTGGCAGAAATGTACTTATGTAATTCAAAGCAGTTCTTTCTTTCTTCTACATTTT CTTTTTTACTTTACTAATTTTTTGATTGTTGAGGGTGGAGAGTTGGCAGGGTGTAGATAGAAAAGGAAACTGAGGATTTG TACGAGGATATAGAGGGAGGTTTGAGCTCATTCATTTGTAGTCAGTCATAAAGGGATAACTGAGATGTATGATGTATCTG TATATTCTATATAGACTCTATTTATGGGGACGAGCAATCAATAACCCTGAGGGGGGCCTTGGTTTTTTTAAGACATTCTT TCCTTAACTAAGAGTCCATTTCTTCCTTTATTTCAATATTATTCTATTTGCAAAATTATTCTTGGCGCTTGCAATTGAAA GAACAATCAATTTTATTACTAGGGATAAAAGACAGTTCAATCGAAGGTAAAAACACTTCTATAGCTTCCAAGACAATCAA TTTCATTACTATGCTAAAAGAACCTCTTATAGTATAGAAAATTGCCTACAATCTGTCTCCAGATTCGCATGTTTAAGAAA GTTCTGGTGTAACTGAAAAGGAAGAATAAAAAACTCAGCAGCTTAAGAAAGTTCTGGTGTAACTGCAGTATGACTGAACC GATGACTTGTACTAGCCGACATGAACTAAATTACAAAACAAGGGAAATATAATGTAACAAAACTGAAGTATGAAGAAGCA TGGAACTTCTCATAGCCCCTTGAGAGCTCCCCATCATGTAGAGGTAATATAATAACAGGGGGTGTGGCATCTGGTTGGAG TGGATACAAGCAAAGATGATTGTGTGCTTTACAGGCAGACAACAGTTTGTTACTCTAGCTTATGCGTCTGAATCTGAAAC TGGATCCTCCACTTCACTCTCACCACTTGAGCTATCATTTGGGGCGGAACTCCCAGCTTTGACAGGATCAGTGTTTTGAT GTAGATCATGCTTGACAAATTTAACCTTCCTTTCTATGCTTTTTCCTTTACGTTTTCGGGTTCCATTATCAGTTAACTTC ATAGTGTGTGCAGCAGCTACAAATGCATCGCTAATCAATTCATTTTGCTTCTCCTCAGCACCTGTATTACCTGCTTCCCC ACTATTGTCAACATAGAATAGGACATCATCTGTTATGTTTCCCTCCAATGTACTTGGTTGTTGTTTGTCTTGGAAATTAT CAAGACATAATTTTGCATGGCTTGTTAAAGCAGCGTCTTCAAAAACTGTAATCCCTCGATTCTCAAGGCTCAGCAGCCAA TCTGGCGAATAGGTTAAACACAGTGAGTTAATGAAATATGTTAGCTTTACTGCATGGAATACCATTTTGCAAACCTAGAT ATAAGAAGGACCAGGTCTACGTACTTATAAGAGCTCCGGGTGAGGATCCATTTGCTCTGCCAGCTTTTTCCTCCAAACAA TTCTGGCTTGTTACCCATTTGATTATTTGCAAAGGTATACGAGAAGCAGAAAATGCACTGCTGTAAGAGACAGCTCTATT CTGATCAAGTTCCCTACAGTAATCCATGTTTAGAAATTATGCTCTAAAAGTTCAATAAGAGAAATATGTATTCAATTATA AATACATGATGAAATAATTAATAGGTCAAACCTAAAATACTTTACAGCCTCGTGAGTAGCAATCAATCTGGTCAAGGTAA GACTTCCATCAAACTTGGCATTAGAGTAAAGGAAAGGGTACTCCACCAATAGTATAGCATCAAACAGAACTTTCCTCAGT AGAATTTCATTTTCAGGTTTCTGCACAGATGGATTCCAACGTGATAGTTATAACTTTAATGGTTCAATTACAGTAAAAAC AAGAATATTGGCTTGCCAAAACAAGGAGACACCATTCTAATAAATAGAACTGGGAGCAAATGGCTTCTGTGATTACTTAT TGCAGATACGGAAGAAATAACAACGATGAATACTAACCAGTATTGAGATCAGAGGCAAAGGTGTTGCTAATGTTGTCCTC GTAAGGAGCTCTGATTGCACAAAAGATAAATACTCATCAAAATAGGAACAAGAAGAATGAGAATCACAGCTGGAAAAAAG TTAAATTAAAGAGGAGTAATGATACCTCTTTTTTAAACACTTCATTTCCACCTATTTTTATTTCTATCTTTCTCATCTTA TCATCTATCACATCTCATATTTTCTCTCTCTTACTTTTTCTTTTCTTCCTATCTCTCTCACCATTCCACTGATCAAGTGT AATGGGAATTCATCAATGAACCAGATTAGCCCAATAAAGAAGAGATTAAAAATATTTGTTGGGGCCAAGGGGAGCCAAAA TCAGTAGACCTATGCCAAAGTGAATGCCACACCACATCTTCGCCCAAAACCTTAGAACATTGAGCATTTGGAGTTGTTCT CTTCTATTATCTTCCCTTAACTCATTCTTAACTAATGTGAAATTTTACCACACATCTGATTTCTAACATTTTTCCCCCTA AAGTGAGAGTCATCTCATTGGTCTCACATCAAAGCCTCTTCAAGTGAGATAGCTGAACAATAACTATTGACTTTGATACC TCTTGTTGGGAATGGAGGAAACTAAGCAACTGATCCGTGAGTGAATGTGAGTATGTAACATCATATCTTAATTCAAAAGC TCTAAGGCCTTAGGTATATGAGTCATTGGGCATATGATTCTATTCTCAAATTATCTTCTTTGAATTCACTCTCACATGAA CTTTCAAGACTCACTTGAATTTTAAACAACAACAAACTCTACAGCTAAATAGGCAGCAGGAAACTGAAATTTAAACCAAA TACAAAACAAAACCTTACTAACCCAAGAAGTATTTGTTCTGAAAGCTAGATATTGAGCCAACAGCCCAAGTCTTCAAATT CAATTCCAGTTCATCCCTTGGCGTAGCCAGATTAAGAGCAAGACACAGTTTCATGAAAAACACTTCCATGATGATGGCAC CAGCCAAGTAACCAACATGAAACTCTCTAGCACACAGCCAGCCACAAACATCACTGCTCACAAGAGGCAACAAAGATTCA AACCCATCATTTATATCCACCCAAACATTCGCCAATTCCGTGAAAGGCAAACTCAAATTCAAACCATCAGAATCAACTTC CTCCTCAGAAATCTTACTACAGCAAACACTTATATACCCAAGAACCATATCTACCAAAGACTTCACCTCCCTCATTGCTT TCCTCTCTCTCTTCAAACTCAACTCCCTTCCCAAAATCTCCACAAGCACTCCATGCGCCACAAAAACAACAGGGGCCAGT AAAGCAACACTCTTTGAGCCACCAACCGAAGCTGAACATGAAGATATCAGCTGAAACAAGCCTTTTGCAGCCAATACTCG GTCCAAGACATCACCTTTCTCCGATTCATGGCCACGAAACTTGATTGCAGCATAGACCCAGATCACCTCAAAGGGTGGAT CAACCTTAGCTTGTATCAATTCGTAAAATGCATCGATGAAGAGAGAAAAATCCGGGGATTCTTTGGGAACCTCAGCCAAA AGAGCTTCCATTGACTGCTTCAGCTTGAGGGCATAGTTTTCCCCCACAAGAGGGACCAAACCAGTTATCTCCATTGCAGA AACTAACACAACTTGGTCTCAACTCTCTAGGGTTTATCAGAGGAGTTTCAGGGTTTTTGCAAGTTAACACAATCT
CDS sequence (LotjaGi2g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAATCCGTTTCAGTGGGAATGGAGAGGATCTATCTCGGTGGAAAGGAACATCATATTCGGACAGGCTGTGGTTC TGTATCTGTCATAGTCTATGGGGATCAACACAAACCAGCTCTTATCACTTATCCGGATTTAGCATTAAATTACATGTCTT GTTTCCAAGGATTATTTTTCTGTCCGGAGGCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAGTCCTCCT GGGCATGAGTTGGGAGCTGCTGCAATTTGTCCTGATGATCATGTCCCTTCTGTTGAGGATTTAGCAGATCAAATAATTGA AATTCTCAACTATTTTAGGCTTGATTCTGTGATGTGTATGGGAGTAATGGCTGGTGCTTATATCCTTTCTTTATTTGCAA TTAAATATAGGGAGCGTGTTCTTGGGTTAATACTTGTATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATGGTTTTAC AACAAGGTCATGTCAAATTTGTTATATTACTATGGTGTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGATACTTCAG CAAGGACGTTCGTGGTAATGCTGAAGTTCCGGAATCAGAGCTAGTTCAAGCTTGTAGAAAACTGCTGGATGAGAGAAAGA GCATCAATGTCTTTCGGTTTCTTCATGCTATTAATGAGAGACCTGATATAACAGATGGATTGAAGACGTTAAAATGTCGA ACGCTTATTTTTGTCGGGGACAGTTCTCCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAGGAGATATAG TGCCTTGGTTGAGGTCCAGGCTTGTGGATCCATGGTTACAGAGGAACAACCACATGCAATGCTGATTCCCATGGAGTATT TCTTAATGGGTTATGGATTGTACAGACCAAGCTTTTTCAGTGACAGCCCAAAAAGCCCACTTAGCCCATCTTGTATCTCT CCAGAGCTTCTTTCCCCAGAAAGCATGGGATTGAAGCTAAAGCCTATTAAGACACGTGTTTAA
Protein sequence (LotjaGi2g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESVSVGMERIYLGGKEHHIRTGCGSVSVIVYGDQHKPALITYPDLALNYMSCFQGLFFCPEAASLLLHNFCIYHISPP GHELGAAAICPDDHVPSVEDLADQIIEILNYFRLDSVMCMGVMAGAYILSLFAIKYRERVLGLILVSPLCKAPSWSEWFY NKVMSNLLYYYGVCGLLKECLLQRYFSKDVRGNAEVPESELVQACRKLLDERKSINVFRFLHAINERPDITDGLKTLKCR TLIFVGDSSPFHSEAIHMTSKLDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSFFSDSPKSPLSPSCIS PELLSPESMGLKLKPIKTRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 2 | 340 | 339 | 4.4E-209 | – | |
| PANTHER | 2 | 340 | 339 | 4.4E-209 | ||
| Gene3D | 13 | 297 | 285 | 4.2E-78 | ||
| Pfam | 18 | 302 | 285 | 9.6E-116 | ||
| SUPERFAMILY | 23 | 295 | 273 | 8.55E-27 | ||
| Phobius | 111 | 134 | 24 | - | – | |
| Phobius | 135 | 340 | 206 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0231300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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