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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0231300 |
| Transcript ID | LotjaGi2g1v0231300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69066079..69068527) extracted from Lotus japonicus Gifu genome v1.2.
CACTGTGAAAGTTAACTTCAATACCTGTGCTTTTGTTTTGTTTCTTCTCAGGTTCAAATTTTCTCCTGTGTTGTATCCTA AATGATTTTTAGATTAATATTTCAGGAACATCATATTCGGACAGGCTGTGGTTCTGTATCTGTCATAGTCTATGGGGATC AACACAAACCAGCTCTTATCACTTATCCGGATTTAGCATTAAATTGTAAGTTGATGCAGTTCATTTTCTTTTAGCCAAAT ACTCTTGAGGCAGATATGCTTTAATCTATCCTCTTAATTGAAGCATAATTTACTTCTATTCATTGTGGCAGACATGTCTT GTTTCCAAGGATTATTTTTCTGTCCGGAGGCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAGTCCTCCT GGGCATGAGGTTTGTATGTTTGATTAACTTGAATTGGATGTACTTTTAATTGCATTTAGTATTGAATATCATTGTTCACA TAGTTTATCTGGAACTTCCACAAGAGTTCTTGCAGTTGGGAGCTGCTGCAATTTGTCCTGATGATCATGTCCCTTCTGTT GAGGATTTAGCAGATCAAATAATTGAAATTCTCAACTATTTTAGGCAAGTACATTATTATTACTGAGGTCACTTTTTGAA CTGTTCGATTTATTTGAGAATACATTCATGATTCTATGCGTAAAAAGGTTGTGATCTACTATTGTTTTTTTTTTTTGAAC TTTACTATTGTTCTTCTTGAAGCAATATCCTAAAATAAAAGGTAGTAAAAATGCTCTTATTAAAGGAACATCTAATGTCT ATGATATACTTACTAATTATATGAATTATTTACTTCTCCAGGCTTGATTCTGTGATGTGTATGGGAGTAATGGCTGGTGC TTATATCCTTTCTTTATTTGCAGTATGTATCCCATTTAGTTTGAAGGGGGGGAAACTGCCCTGTTTAACCAACACTTTCA TTAATGCTTAGAGAGTTTTTAATATGAAGTCAATCTTATCGATTTTGTTCTTTTTCACTTCTTCGACACAGATTAAATAT AGGGAGCGTGTTCTTGGGTTAATACTTGTATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATGGTTTTACAACAAGGT TCCTTTCAAATGCTCACATTCTATGCATTTATGAATTCCTTAATTCAAAAACATGGCCTAAAACTGCTTCTAATTTCAGG TCATGTCAAATTTGTTATATTACTATGGTGTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGATACTTCAGCAAGGTA TTATAGTGCGAGGTTCTTAGCCCTTTTGTATTTGCTCTCTTATTTAATATGTTCTGAGGTTTCCTTGTCAACTTTAACAG GACGTTCGTGGTAATGCTGAAGTTCCGGAATCAGAGCTAGTTCAAGCTTGTAGAAAAGTCAGTGCTAAGCTAATTTAGTT TCTTCTCCTGCACTTCCCTATAGCTTAAATGTGATTGTTATGTCCTTACTTCTTTATTTTTGGGTGTATTTGCCTCACTT ATCACTGGTTCCTTGTCATGTCTTTTCTTTTCCAGCTGCTGGATGAGAGAAAGAGCATCAATGTCTTTCGGTTTCTTCAT GCTATTAATGAGTAAGATCTGCTACATGGTTACCTCAACATATTTAACTATTTACTTATGTGCACTGCCTCTGGTAGTTT GAGTTACCATATTTATGTGCTCTACTTTTGTGTTGCCGACTTGCAGGAGACCTGATATAACAGATGGATTGAAGACGTTA AAATGTCGAACGCTTATTTTTGTCGGGGACAGTTCTCCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAG GAGATATAGTGCCTTGGTTGAGGTATGAAATTGTGAAAGTTCGGATTTTTGAAGGATGTACATAACATCCATGTTAATAA CAAGAAAGTATACCTAAAAGGCTTGACATTGGATATATGGGTTTTTCATGTATTTCTGGATCCACGTGATTCTTAGCATG TTTGGATCAGTTCTTTTTCATCAAAATCAAATTCTGAAACCTAGAAACTTCCCCATAATTGATTCTGACTTTAGAATCAA TTGTAGAAGAATTTCCGAACAACAGTGTTGATTATGATAAATAACAAAATATGAATGCATGTAACATTAGTTACAAGGCC TAAGATAGCATGGAAGTTTTGCATATCATTCATTATTTGAAAGACAACATCTGTGTTGATATGGCAGGTCCAGGCTTGTG GATCCATGGTTACAGAGGAACAACCACATGCAATGCTGATTCCCATGGAGTATTTCTTAATGGGTTATGGATTGTACAGA CCAAGCTTTTTCAGTGACAGCCCAAAAAGCCCACTTAGCCCATCTTGTATCTCTCCAGAGCTTCTTTCCCCAGAAAGCAT GGGATTGAAGCTAAAGCCTATTAAGACACGTGTTTAATTGGAAGTTTGA
CDS sequence (LotjaGi2g1v0231300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGTTTCCAAGGATTATTTTTCTGTCCGGAGGCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAG TCCTCCTGGGCATGAGTTGGGAGCTGCTGCAATTTGTCCTGATGATCATGTCCCTTCTGTTGAGGATTTAGCAGATCAAA TAATTGAAATTCTCAACTATTTTAGGCTTGATTCTGTGATGTGTATGGGAGTAATGGCTGGTGCTTATATCCTTTCTTTA TTTGCAATTAAATATAGGGAGCGTGTTCTTGGGTTAATACTTGTATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATG GTTTTACAACAAGGTCATGTCAAATTTGTTATATTACTATGGTGTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGAT ACTTCAGCAAGGACGTTCGTGGTAATGCTGAAGTTCCGGAATCAGAGCTAGTTCAAGCTTGTAGAAAACTGCTGGATGAG AGAAAGAGCATCAATGTCTTTCGGTTTCTTCATGCTATTAATGAGAGACCTGATATAACAGATGGATTGAAGACGTTAAA ATGTCGAACGCTTATTTTTGTCGGGGACAGTTCTCCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAGGA GATATAGTGCCTTGGTTGAGGTCCAGGCTTGTGGATCCATGGTTACAGAGGAACAACCACATGCAATGCTGATTCCCATG GAGTATTTCTTAATGGGTTATGGATTGTACAGACCAAGCTTTTTCAGTGACAGCCCAAAAAGCCCACTTAGCCCATCTTG TATCTCTCCAGAGCTTCTTTCCCCAGAAAGCATGGGATTGAAGCTAAAGCCTATTAAGACACGTGTTTAA
Protein sequence (LotjaGi2g1v0231300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCFQGLFFCPEAASLLLHNFCIYHISPPGHELGAAAICPDDHVPSVEDLADQIIEILNYFRLDSVMCMGVMAGAYILSL FAIKYRERVLGLILVSPLCKAPSWSEWFYNKVMSNLLYYYGVCGLLKECLLQRYFSKDVRGNAEVPESELVQACRKLLDE RKSINVFRFLHAINERPDITDGLKTLKCRTLIFVGDSSPFHSEAIHMTSKLDRRYSALVEVQACGSMVTEEQPHAMLIPM EYFLMGYGLYRPSFFSDSPKSPLSPSCISPELLSPESMGLKLKPIKTRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 8.6E-179 | – | |
| Phobius | 1 | 59 | 59 | - | – | |
| Pfam | 1 | 251 | 251 | 2.6E-98 | ||
| PANTHER | 1 | 289 | 289 | 8.6E-179 | ||
| Gene3D | 1 | 246 | 246 | 1.3E-63 | ||
| SUPERFAMILY | 14 | 244 | 231 | 8.28E-26 | ||
| Phobius | 60 | 83 | 24 | - | – | |
| Phobius | 84 | 289 | 206 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0231300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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