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LotjaGi2g1v0231900.2

Overview

Field Value
Gene ID LotjaGi2g1v0231900
Transcript ID LotjaGi2g1v0231900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Phosphoribosyl-AMP cyclohydrolase; TAIR: AT1G31860.1 histidine biosynthesis bifunctional protein (HISIE); Swiss-Prot: sp|O82768|HIS2_ARATH Histidine biosynthesis bifunctional protein hisIE, chloroplastic; TrEMBL-Plants: tr|A0A151T975|A0A151T975_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0231900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:69102420..69103841) extracted from Lotus japonicus Gifu genome v1.2.

GGGGCACCTCATGTAAGTTTTATTTATATTTCTGGGTTGAAATTACGTAATAATTTAGTTCCATGGGATTAAGTTCGGAA ATTCTTTTGCACTTTTATGGTGATTGTAAATGTGTTGTTGATACTAAAAGGAAAGCTCATCCTTTGTGTTGCTTATGAAA TTTCTTGGCAATTGTTGTTTTCATTTCTTCCTTATTTTAATGTTATTTCTGATTTTTTATTTCACTTTAAAAAGTTCAAA CTTTTGTCAGGTAGACTCATTTCTGGACAGTTTAAAATGGGATGATAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTG ACACAGGAGCCATCCTAATGCAAGGCTTTGCAAATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTC TATAGCCGGTCACGATCAGCATTGTGGACGAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGA TTGTGATCGCGATTCCGTAAGCTCTTGCCTTCTCTCCCGATGGAATTATAAGTGTTTTCCTTTTCTTCTTTGCATTAGTA TCATATGGAACCTTGATTACTTTTTCCCCCTGGTTTCTCAGATAATATACCTTGGAAAACCTGATGGGCCTACCTGCCAC ACAGGAGCAGAAACATGCTACTATACATCAGTCTTTGACTTGTTAAAAGAACAAGTGGTTAGTTTAAATTGATTCAAACA AGCATGTTATTGGCTTGTTTTGTTTCAAATACAGTCTGCAATATTCAAATTTATTTGGGTTTTTTTCTACAGGCTGATGG AAATAAATTGGCATTAACTTCTTTGTATGACTTAGAGTCTACAATATCCCAGCGCAAAGCAGAGTTAGCAGAAGTAGAAA ATGGAAAGCCTTCTTGGACAAAGCGATTATTGCTTAATGATGAGTTGTTGTGCTCTAAAATCAGGTTGCGTATATATTGG CATGTTCTTCTGTTCAGTTTGAATATAAGTAACAAACCTTTTCCCCCTTTTCTTCCCCCGAAAAATCCATGTTGTCCATG CTTCAGTTATTGCTAAGCCTTTTAGCTGATACAATTGCCTCTGTGCTGAACCTTTTGTTTAAAATACTAATTTTCTTATG ATTCACTTTGCTTGAAGAAAACATTTGGAGTAAAAGCTTGTTATCTCTATGACTTCAGATTGTAACTTTATCTTTCTACT TGCAGAGAAGAGGCAAATGAGTTGTGTCAAACACTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCTGA TGTACTGTACCATGCCATGGTTTTGATGGCACGGAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAGAT TTTCCCAATCTGGTATTGAGGAAAAGAGAAGTCGTGCGTCCCAGAAATCAGTGGACGGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0231900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGGCTTTGCAAATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTCTATAGCCGGTCACGATC AGCATTGTGGACGAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGATTGTGATCGCGATTCCA TAATATACCTTGGAAAACCTGATGGGCCTACCTGCCACACAGGAGCAGAAACATGCTACTATACATCAGTCTTTGACTTG TTAAAAGAACAAGTGGCTGATGGAAATAAATTGGCATTAACTTCTTTGTATGACTTAGAGTCTACAATATCCCAGCGCAA AGCAGAGTTAGCAGAAGTAGAAAATGGAAAGCCTTCTTGGACAAAGCGATTATTGCTTAATGATGAGTTGTTGTGCTCTA AAATCAGAGAAGAGGCAAATGAGTTGTGTCAAACACTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCT GATGTACTGTACCATGCCATGGTTTTGATGGCACGGAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAG ATTTTCCCAATCTGGTATTGAGGAAAAGAGAAGTCGTGCGTCCCAGAAATCAGTGGACGGGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0231900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQGFANREAVVTTISSRKATFYSRSRSALWTKGETSNNFINVHDVFLDCDRDSIIYLGKPDGPTCHTGAETCYYTSVFDL LKEQVADGNKLALTSLYDLESTISQRKAELAEVENGKPSWTKRLLLNDELLCSKIREEANELCQTLESNEDKSRTASEMA DVLYHAMVLMARKDVKMEDVLQVLRQRFSQSGIEEKRSRASQKSVDG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.20.400
1 65 65 7.3E-23
IPR038019
SUPERFAMILY
SSF141734
1 78 78 1.7E-29
IPR038019
Pfam
PF01502
1 74 74 1.9E-27
IPR002496
PANTHER
PTHR42945
1 201 201 6.4E-90 –
PANTHER
PTHR42945:SF1
1 201 201 6.4E-90 –
Gene3D
G3DSA:1.10.287.1080
88 184 97 2.6E-23 –
SUPERFAMILY
SSF101386
96 188 93 2.99E-15 –
CDD
cd11534
96 184 89 1.03861E-26
IPR008179
TIGRFAM
TIGR03188
96 184 89 5.6E-21
IPR008179
Pfam
PF01503
98 187 90 3.7E-11
IPR021130
Coils
Coil
132 152 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000105
Biological process Histidine biosynthetic process The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
Subterm of
GO:0004635
Molecular function Phosphoribosyl-AMP cyclohydrolase activity Catalysis of the reaction: 1-(5-phosphonatoribosyl)-5'-AMP + H(2)O = 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide.
Subterm of
GO:0004636
Molecular function Phosphoribosyl-ATP diphosphatase activity Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H(2)O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H(+).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0231900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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