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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0234300 |
| Transcript ID | LotjaGi2g1v0234300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q197F0|VF380_IIV3 Probable serine/threonine-protein kinase 010L; TrEMBL-Plants: tr|A0A151RWN5|A0A151RWN5_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi2g1v0234300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69343650..69346797) extracted from Lotus japonicus Gifu genome v1.2.
CAACAAACCAATCTCTAACTGATGATGAGAATAATGAAAGGAAGGAATTGATGGGAAAATTTTGGAGGGTAGTCAATCTT CAGGAATCTTTTTTGAGACAAAAATCTAGAGTGCAATGGCTTAAGGATGGTGATGCAAACTCTGCCTTTTTTCACAGCAG GATGGTGAATTGGAGGAGACGATCTAATGCAATTAATGGTTTAAATTTAGATGGTGCTTGGCAAGAAGATCCTGCGGCAG TAAAGGAAGGTATTAAGGTTTTCTTTGAGCAGAAATTTAAGGATTATGGTGATGTTGGACCAAATCTTGATGGGATCCCT TTTGCACATCTATCAGAGATTGACAATGTGTTTTTAACATCGGAATTTGATATGTCTGAAATTAAAGCTGTTGTGTGGGA TTGTGAGGGCAATAAAAGTCCTGGACCGGATGGGTACAATTTTAAATTCATTAAAGAATTCTGGGATATTTTACAGTTTG ATGTGAAGAAAATGGTTGATGAATTTTATGCTACTGGGAGATGGCCTAGAGGTACAAATTCATCTTTTATTACTTTGATC CCCAAGGTGGATTCACCTCAGAACTTACATAAATTCAGGCCGATTTCATTGGTGGGATGCCTTTACAAGATCATTACAAA GTTGTTGGCAGCAAGAATAAAATTAGTGCTACCGAAGGTGATTGCAGAGAATCAATCTGCTTTTCTTGGGGGAAGAAATA TGCTTGATAGTGTGGTTATAGCGAATGAGACGATTCATGGGGCCAAATGTTGGAAAATCCCATCCATGATCTTAAAGGTG GACTTCGAAAAGGCATATGACTCGGTTCGCTGGAGTTTTCTTGTATATCTGATGCGACGGATGAATTTCAATGAGCTTTG GATAAGATGGGTAGTTGGCTGTCTTGAATCTTCTTATGTTTCTGTACTAGTAAATGGTAGTCCAACAAATGAGTTTAAGA TGGAAAAAGGTATTAGACAGGGAGACCCTATGGCTCCATTCCTGTTCTTAATTGTGGCAGAAGGTTTGACTGGTATCTTG AGACAAGCAGTTTCATCAGGAACTTTTCAACCTATCAGTGTTGGTAGGGGGGTTAAGGTGGATGTGGCATTACTGCAGTT TGCTGATGATGCTCTCTTTTTTGGGAAAGCATGCTTACAGACAGCACATACAATGAAGTGTATTTTAAGATGCTTTGAAT TAGTATCTGGCATGAAGGTAAATTTTTACAAAAGCAAGTTAGCTGGGGTTGCAGTTGATGTTTCTGTAACAGAGAGGTTT GCTGCTTTACTCAATTGCAGGAGGATGGATATTCCATTCATTTACTTGGGTTTACCTGTGGGGGCCAATCCAAGACGTTT GTCCACTTGGGAGCCAGTTGTAGAGAAGTTGAGAAGGAAACTTGCTAGTTGGAAGGGTAAACACTTGACTTTTGGAGGGA GATTATGTTTGATTAAAAGTGTACTTACTGCTTTACCTCTTTTTTACATTTCCTTCTTCAAAATGCCTAAAGGGGTAGCA CAGAAATGTAAACAGCTTATGATGAGATTTTTGTGGGGAGGAGGAGAGGAAGATAGGAAAATTTCATGGGTTAGTTGGAC CCAAATCTGCTCTCCAAAAGAGGTGGGCGGCTTAGGTGTAAGAGACTTGGAAGTTTTTAATGTGCAAGAGCGCTGGTCAT TAGTTTGAGAGAGGTATCTGTAGGAGGATTGGAGAAGGTGATGACATTCTCTTCTGGCAGGAAGATTGGCATGGTGGGGG CCCATTTACTGAACTGTTCCCTGATTTGTTCCATATCTCTACGCAACAACAATGCAGGATTGCTGAGATGGGCCTATGGT TTGAAGAAAATTGGAATTGGGAATTAACTTGGTCAAAGGAAATTATAGGTAATCTTATATCTCAAAGAGAAGCCTTGCTT AGGTCTTTATCTGTTGTCCCATTGGTGAGAGGGAGAAAAGATTCATGGCGTTGGAAATATGAAGGCAGTGGAAATTATAC AGTAAGCTCTGCATATGAAAAACTCATGGATTTTGATTTATCAGATATGGATACAAATTTCAGGACTCTGTGGACAACCT TTGGCTCCCTCAAATTCATTAGCTTTGGGTTGGCGAGTTCTTCTCGATCGTATTCAATCAAAGGTAAATCTTATTGCTCG CAATATTCCTTTGCCTAGTTCCCTGTGTTCTTTGTGCTTGGTACAGGAGGAAAATACAAACCATTTCTTCTTGTTATGTC AATTTGCTTGGCGTGTTTGGACACTCATCTTTCAATGGTTGGGATGGTTTTTTGTTTCGCCTGGGACTGCTATGGATCAT TTTCGACAATTTACTGGCTTAGGCTCAGGTTCAGTGAGGAAGGGACTTGCAGTAGTTTGGGTGGCAGTTATATGGCAGAT ATGGATCGCTAGAAATGGGGTGGTGTTCCGTCAAGAAGACCCGAATCCAGAGTGGGTTTTTGAACAAGCCAGGAATAAAG CTTGGCTGTGGTTAAAAGCTAAGAACAGAAATTTCCATCATACAATATCTGATTGGTTGGGCGAACCAATTTCTTGTTTC GCAGTCCTATAAACTCATGATTTTTTCCTGGTTTTAGATTGCTCCAATCATATTATTTCCATGGGTGAAGTCTGCAGCTG GTCTCTTTGGGTATCAATCATGCTTGGAGGTTGGATATTGGAATGTTACATGATATTGCTTGGAAGGATTCTGACGTCTT ACTGATTGCACTGTTTGCTGCTGGATTTTTTCTTGGCTACTACATTGTCTTGATGTTTTGTATTGAGCAGCTGAACTTAG TTACCTTAATAGTTGTGATATTTTATATAGTCCTTCTTAGAGTTTTCCTATTGATTATAGGATTTGTGTACTCTTTTTTC TTCACTAGGTTTTCCCAAGGGGTTTTTCCTGGTAAGGTTTTTATGAGACACTTTTCCTATAATCTTTCTCTAAGGAGGTG GTGGGTGGTGGGTCTATCAGCTTAGTTGGTGGTTCTTGATCTAGCTACTGTAAAGTTGATACATTTATTTTTTCTATCTC TTGTTCCTACTTGTATTGGGTTGAAGTACCCCTTATACTTCATTCAATATATTTTATCCAGCTTATCAAAAAAACACTCT GTTTTGATGCAGGGGTGAAAATGAGGGG
CDS sequence (LotjaGi2g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAACTCATGGATTTTGATTTATCAGATATGGATACAAATTTCAGGACTCTGTGGACAACCTTTGGCTCCCTCAAA TTCATTAGCTTTGGGTTGGCGAGTTCTTCTCGATCGTATTCAATCAAAGGTAAATCTTATTGCTCGCAATATTCCTTTGC CTAGTTCCCTGTGTTCTTTGTGCTTGGTACAGGAGGAAAATACAAACCATTTCTTCTTGTTATGTCAATTTGCTTGGCGT GTTTGGACACTCATCTTTCAATGGTTGGGATGGTTTTTTGTTTCGCCTGGGACTGCTATGGATCATTTTCGACAATTTAC TGGCTTAGGCTCAGGTTCAGTGAGGAAGGGACTTGCAGTAGTTTGGGTGGCAGTTATATGGCAGATATGGATCGCTAGAA ATGGGGTGGTGTTCCGTCAAGAAGACCCGAATCCAGAGTGGGTTTTTGAACAAGCCAGGAATAAAGCTTGGCTGTGGTTA AAAGCTAAGAACAGAAATTTCCATCATACAATATCTGATTGGTTGGGCGAACCAATTTCTTGTTTCGCAGTCCTATAA
Protein sequence (LotjaGi2g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNSWILIYQIWIQISGLCGQPLAPSNSLALGWRVLLDRIQSKVNLIARNIPLPSSLCSLCLVQEENTNHFFLLCQFAWR VWTLIFQWLGWFFVSPGTAMDHFRQFTGLGSGSVRKGLAVVWVAVIWQIWIARNGVVFRQEDPNPEWVFEQARNKAWLWL KAKNRNFHHTISDWLGEPISCFAVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 76 | 76 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Pfam | 25 | 82 | 58 | 2.4E-10 | ||
| PANTHER | 32 | 175 | 144 | 1.1E-23 | – | |
| PANTHER | 32 | 175 | 144 | 1.1E-23 | – | |
| Phobius | 77 | 94 | 18 | - | – | |
| Phobius | 95 | 113 | 19 | - | – | |
| Phobius | 114 | 132 | 19 | - | – | |
| Phobius | 133 | 185 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0234300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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