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LotjaGi2g1v0235300.1

Overview

Field Value
Gene ID LotjaGi2g1v0235300
Transcript ID LotjaGi2g1v0235300.1
Lotus japonicus genome version Gifu v1.2
Description Microtubule-associated protein TORTIFOLIA1; TAIR: AT2G07170.1 ARM repeat superfamily protein; Swiss-Prot: sp|F4IK92|TORL2_ARATH TORTIFOLIA1-like protein 2; TrEMBL-Plants: tr|A0A0S3TD74|A0A0S3TD74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0235300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:69514352..69520764) extracted from Lotus japonicus Gifu genome v1.2.

TCACGCAGACAAGCGTCTCATCTCGCTCCCATCCCACGCAAATCTGTCCAAAGTAGTAGTAATAAATAAACAACCACAAA TAAATTCAAAAACTCAAACAGAGCTCTTCTCCTCTGTTTCCGTGCACCGTCACCGTCGCCGTCGTGGTGGCGCCGCCGCA TTTTCCCAAACCCCGAGGTCACATCACATTCCACACACACACTCTCACACACACTCTCACTGTGAAGGAAGATGAAGAAG AAGCCACAGTCACAGTCACACTCTCACGGTGGAGGAAAATCAAATCTGGAGGTGAAACAGAGAACCGCTCTCGCTCTCAA CAAAGTCGGCGACCGCGACACACAGCAAATCGGCCTCGAAGAGCTTGACAGAATCCTACAATCTCTAACCCCGGAATCCA TTTCACCATTCGTCTCATGCATCGTCGACACCGACTCCGACCAAAAACCCGCCGTCAGAAAAGAATGCATCCGCCTCATC GGAACCCTAGCCACCAACTACGACGCCAGCCTCGTCCTCCCGCACCTTCCGAAGATGGTTGCCAGCATTGTGAAACGTCT CCGGGATCCTGATTCAGTTGTTAGAGACGTCTGCGTCCACACCGCCGGCGTTCTCGCCGGGAAATTGGTTAACGGGAATA ACAAGGTGTTTGTTGTTTTGGTTAGGCCGGTTTTTGAGGCTCTTGGGGAGCAGAATAAGCATGTTCAGTCTGGTTCTGGG TTTTGCCTTGCGCGGATTGTTGATAACACGCGCCACCCTCCGGTTTCGCTTTTGCATAAGATGTTGAGCAGGACTGTGAA ATTGCTTAAGAATCCGCATTTTATGGCGAAGCCTGCGCTGGTTGAGTTGAACCGGAGCATTATCCAGGTTTTTGCTTTTG TTTCCAATTGGGGATTTGGATAATCAATTTTATTGGAGTGTTTATTGCATGAGAGTATTTAGGTTAACACAACATTTATT TAGTAAGAAATAACTTAGGGTATGTTTGGAAATGGAATTCATTAATGTTTCACTCGATATTCGCTGTCTGAGGTGTGTAG ATAGAAGCTAAATGGTGATCCAAACAGACACTTAATTTTAATGAAAAGCTGAAATGAGCTCAAAAGAGTTTGGTTTCCTT TCCTTTTATAATTCCGCATGACAATAACCGGCGTACATTTGTAGTTTTAATTAGGGCATTTGGATTAAAAATTTGATCAA GCATGATAATTTATGTTGAAAGAACTTATTCAATGAGAAAATCTTGTGAAATTAGCTTAGGTGATCTTATATATTGGTTA TAAGCTATTTTGATAAGATTAACCTATTACCTATAATAGATTTGGGTTAGCTTTGGGTTTATTGGAGTTTTTGAACTTGG ATTAGTATTTTGGTTCCTAACTTAAAAAAAAAGAACCTTTCTAAATTTATAGGTGCTTACAGAGAAGCTAGATGAAGAAG CTTGAGCACAATTGATGTGCTGAATATTACTCCAATTTTTGCCGAATGCTATAATTTGAAATACTTTTAGTCGTTACTCG TTGCAAAATCATTTCAACATTTCTTTTCTTGAAAGTGTTTGTTGAAGTTTATGTGAACTGGCTCTTGGTTAAGTTTTTAT GGTATGAGATAGTTATGGATAAGGTGCAGAAAAAATTCTCTCAAATGCCCCTAGGTAAAGACACTCAAAATTTTCTTGTT CAGGCTGGAGGTGCTCCAACCGAAAACTTTCTCTCCACTGCTGTTGCCAGTATCCAAGAGGCCCTGAAAGACAGTGACTG GACAACACGCAAAGCAGCTTCTGTTGCATTAGGAGAAATTGCTTTGAGCGGTGCTTCTTTCTTGGCATCTCTAAGGGCTT CTTGTGTTCGTTCTTTGGAGTCATGTCGATTTGACAAGGTGGGTCTCCCTTTGTTTTTTTGACATTTATGAAATGCATGT TCTTGTGAATTTATGAGATACTTCTTCTGATTTCTTCTAGGTGAAACCAGTTAGGGATGCTGTTTTGCAAGCGCTGAAAT ATTGGAGAATTGTTCCAGGCTCCAATACTCCGGAGCCTTCTGAAACAGGATCCTCCTTAAAAGGTTTATTTATGCTACCT CTCAGTTTTCTTTGACTTTTGATATCGATATTGCAGCAGATAAGAAACCTTGATGTGTTATGCCTGAAATATAACAAGCA AGTCTACTTATTCCAACAATGCACTGAATAAACTCATTTTCAATTGTTCAGTTTCCGGATCCTCAGAAGAGATTATTGTC AGAAAAATGTAATGCCAGAATGCGTAACCTCTGAAAAGACATAAGTCCAAAATAGTTGTCTATTTGAAATAGTTAGGGTA GTAACAACAGGTAATAGTAGTTGTTAATATTTTGTATATAGCTATAATACAACTGTCTTGTTCTGCAATAATTTGAGGGT GAAAGTTATTGAAAGCTTTGAGGGGAAAGCTTGTCAGCACCCTCTCTTCTCAATAGTTAATTTCCTAACAGGGAGTTGAA TAAATTCTTTCGTGAATTCCCTCTCCACCCTTCCCCTTATTATCCATGACATAGGATTCAGGGTTCGTTAGCCCAATCCC AAAGATCCTTTGATTCTTTCTGTTGTCAAAATTTGCTTTCAGACGTAACATTTTCCATAATCTCATCATAAGACGTGTTT GGGATTCTCAAATCTGTTATCTGGAATAAAGATATCCTCAGTAGAATTTTAAGTTCCAATCAGACAATAATATTTCCATT CATCTTAATAAACCTTGACCACTTGACTAATATTATCATCTGGTATTCTGAATCTGCAATGTATCCTTCTGATTTGCATC CTTTTATTCATTGACTTGCTTTTACTTTCTTCTTTATGTTGCTTTCTGCTTATGCTTTCCACAGAAAATATCTGCGGAGG TGACTCTGCTGATCTAAGTAGCACTACTACTGAATCTAGACAGAGGGATTTCAAGCACCAAAATGTTAATATGAAGTCAA GTATGGGAAGGATTCCTTTGTCTGCAAGAAAAGGATGTCAAAATTATGTCGGAAATCCTCACAATCTCAAACCAGATGAT TGGCATGTTGAAATTGCAGTGCCCAGAATCCGTTCTACAGCGGAATTCCAGAATGAAGAATCGGACTGTAGTTCTGTCTC TAAACTGATGGAAACAATGAGCGCTGATGTTACAAGCTTGCAGGATGTTGGTTATGAATATGAGCCTATTGATGATAAGC AGGAGTGTTCTTCTGTCTCTAATCTTACCACCGATAACTATGATACCAAGTTTTTAACTACTCAGGACTGCTGTATAAAT AATGAATTACAGAAGCCTATTGCAAGAAGTCAACGGTTTGGTGAAGAAATAAGCTGTAATGAACAGATATACTCCAAAAA AATGCAACATCCTAGAAGTTCTGATTCTACAGTCACAGTGTCAAACCCCCAAACCACACACGAATGTTGTGCACAAATGG CAAATGAAATGATTTGTATTCAGAATCAACTTTCAGACATGGAAATCAAACAAGCAAACACAATGCATCAATTACAGGTA TCATACATACATAATGCACTCTCATTCTAAGTGTCTGAACTTTAGTGCTACTGAACACTTTCCTATAAGCAGTGGTCTCT TGAACATAGGCTTCCTTCCTTGATTTCTTTTCACGGCATGATAACACTTGAAGTACTATTCAGTAAGACATGTTGGTTTT GTATGATTCTGTCGTTCCTACTAATAACAAAACCAATTCAGTGATGATCTATGTGATTAATCACAAGGTGGTAAAGAAAA ATATGGATAATGTAACTTCTGGCACACACATGCACACCTAATTCAAATATTGGACCGCAATTTTCTTGTTATACATCACA TGATTTACCATTTACATAGCATTCTGCCTTATCTTTTTCAGATGTCTATAACTGGAATAGTGGACGCTCTTTCTACTATC CAATCTAGAATGCTAAGCTTAGAGTATGCAGTTGATAGATTAAATCAAGAATCTTTGCAAGGAGGAAGACATTCTTATTC AGAAAACTCCAGGTTAGTGAGGCAGAGCCAAAATGTGGCTTCTCCTAAATTCCCCATATGCACTCCTAGGCCATCTGCAG AAATTAGTAATAAGCAATCAGCCATGTCGGTTAAAAATTCCGAAAGTTGGGAGAAAACTACGTTTTCAAGGAGCCAACCA AGGATTCATGTTGGAGATAGTGAGGATTTGTGGAAAAGTTGCAATGTAAATGTTGCCAGAAAGTTTACAGAGAAGGACAT TTTGAATTGCTCAGGGAAGGATACACAAAGAACAAGTTCAGCTCAAATGAGAAAGAATGATGGTATCTTTGCTGCTAGAA ACAGTTGTTCTGAGAGTAATACTAACCAGTGGAAATGTGTAAAGCGTCTTATATGTGAAGGGGATCTAAATTCTGCATAT ATGGAAGCTTTGTGCTCCAGTGATGAACTAATTCTCCTTGAGCTTCTGAGTAAAACTGGTCCAGTTATAGAAAGTTTATC AGTGAAGACTGTCAATGTTCTCTTTAGTACTTTAGCCTCATATCTTGTGGAAGCAAATTATTTTAGTACCATCATGCCGT GGCTGCAGCAGGCAAGTTCACTTACTCATGCTAATTAATAGTGCAACCATATTATGATTATCATTTTGAATTCAATATTC CTTTCATTTTCCTTAAGTAGCTTCCTCGGAATGAATGAAATGTATATAAGAGTTACATAGATGATGATTTAAAGAAATCA TCATATAGCATGAAATGTCAGAGCTTCATGTCATAAATAGAATTCTTAACTTTTCACACCAAAATGCAGAAATATGAAAT GAAGATGCTTAAATTAATTGCTTGCCCTTGATTGGTAGTTTTAACCTTTATATGAAATGTCATTTCTGATTACCTTCTAT GAAATACCTTCGGATCTGTATACATCTCAACAATCTTCCGATGGTTATTTTTGCTTTCATTCCATGTCAATCTTCCGATG GTTATTTTTGCTTTCATTCCATGTGAAAAATATGTGTAATAAAACTCAAAACAAGCCTGGGCTATTGAATTCTTTGATGA TAATTCTATGTAGGATATGTTGGTAGGTAGGAGAAAGTTATAGTAAAAGAAAAACATGTTTTCACGTTATATATTAATTC AAAATGTTAAACGAACAACGACCACCTGGGATGGTAAGGAATCATGATCATATTGAAAAAAATGGAAAATATTAGCATTT TTATTTTCCCAATTCATAATTTAATCATGCTGATTGTTGATAGTATAATGGCATCTCAGTTTCCTTTTCGGCTGTTGTCC ATTTTTAAGCTTAAAACTTGATGATGCACTTGTCTGAAACACTTAGACTGGAAAATGATTCTGGTCCCTGGTTGATGTGT ATACTGTATCCAATAGCAACTCAACAGTCAGGCCCTATGTCTACATGAGTTTATATCCAAGTCTTTATGGTAGTTTTTCT TATTTTAGGTTGTTGACATGAGCACTATCCATGGACCAAATTGCATATCTCTATCTACTGACGCCAAGGAACAGCTTCTA TCTGCAATTCAAGAGGCTGTGAACCTGAATATTTTCAGCCCCGCAGAAAGAAGGTGTGTTGCGGAAATAGCAATGAAGTT ACATCATATGTGGGGTAAGATTATTGCAGGTTAATGACAAAAAGATCATGTGTCCAGCCATTTTCGTTTTGAGAGTTAGT TGTCGTTCTTGGTTGAAATAAAAAAAAAAAGAGCCAATTTTAGTTGTATGCATTTTGTTAGTTACTGAACGTTAAGTTTG GCGAATTATTCATGGCCGTGTACTTTGGAAAGATGGTAACTTGTGTATTGCATCTTTGACATTGAATGTGTAGAACTTGA TTTAGCACTATTAACTCTTAAATTACAGCAAAATAAGAAATTCACTGAACACTGGAAATGTTTATTTGTACTTTACTAGT TACAGGTAAATATGTAATTGACTGAAATAGAAATTAAACACTTGTATAAATTGATGTGTACAATAACTTGATGGAAGTGA AGTTGAGGCATTTGGTGATCATCATGCACATAAGACTCTGCGACGATACTCTCCAAGAGCCCATATAGGAAAGATGTTTC GATATGATGAGTAGTTTAGGGTACAGTTCCTCATAAATACTCCTGTAATCTCCTGTAGTTTTTTTTTGTTGGCAATGAAT AAAAATAAGTTGATTATGAAGTGCTAAAAGTATATTTAATTTGCTTTTCTATGGCTGCTATCAAATAAATTACCTGTTGT GGGAAGTCTCCATCATCCATTTGTGAATTAATGAGTAACCTTATTCCACGGTGAATTGGTGTCGGATCTATCTCAGCCTT TTTTCATAAAAAAATTCATTGTTAGCGCATAACATACTCTTTATCTATTAAGAAATTTCCAGATATTGCTATTACTTCTG TATTTTGGTGAGG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAAGAAGCCACAGTCACAGTCACACTCTCACGGTGGAGGAAAATCAAATCTGGAGGTGAAACAGAGAACCGCTCT CGCTCTCAACAAAGTCGGCGACCGCGACACACAGCAAATCGGCCTCGAAGAGCTTGACAGAATCCTACAATCTCTAACCC CGGAATCCATTTCACCATTCGTCTCATGCATCGTCGACACCGACTCCGACCAAAAACCCGCCGTCAGAAAAGAATGCATC CGCCTCATCGGAACCCTAGCCACCAACTACGACGCCAGCCTCGTCCTCCCGCACCTTCCGAAGATGGTTGCCAGCATTGT GAAACGTCTCCGGGATCCTGATTCAGTTGTTAGAGACGTCTGCGTCCACACCGCCGGCGTTCTCGCCGGGAAATTGGTTA ACGGGAATAACAAGGTGTTTGTTGTTTTGGTTAGGCCGGTTTTTGAGGCTCTTGGGGAGCAGAATAAGCATGTTCAGTCT GGTTCTGGGTTTTGCCTTGCGCGGATTGTTGATAACACGCGCCACCCTCCGGTTTCGCTTTTGCATAAGATGTTGAGCAG GACTGTGAAATTGCTTAAGAATCCGCATTTTATGGCGAAGCCTGCGCTGGTTGAGTTGAACCGGAGCATTATCCAGGCTG GAGGTGCTCCAACCGAAAACTTTCTCTCCACTGCTGTTGCCAGTATCCAAGAGGCCCTGAAAGACAGTGACTGGACAACA CGCAAAGCAGCTTCTGTTGCATTAGGAGAAATTGCTTTGAGCGGTGCTTCTTTCTTGGCATCTCTAAGGGCTTCTTGTGT TCGTTCTTTGGAGTCATGTCGATTTGACAAGGTGAAACCAGTTAGGGATGCTGTTTTGCAAGCGCTGAAATATTGGAGAA TTGTTCCAGGCTCCAATACTCCGGAGCCTTCTGAAACAGGATCCTCCTTAAAAGAAAATATCTGCGGAGGTGACTCTGCT GATCTAAGTAGCACTACTACTGAATCTAGACAGAGGGATTTCAAGCACCAAAATGTTAATATGAAGTCAAGTATGGGAAG GATTCCTTTGTCTGCAAGAAAAGGATGTCAAAATTATGTCGGAAATCCTCACAATCTCAAACCAGATGATTGGCATGTTG AAATTGCAGTGCCCAGAATCCGTTCTACAGCGGAATTCCAGAATGAAGAATCGGACTGTAGTTCTGTCTCTAAACTGATG GAAACAATGAGCGCTGATGTTACAAGCTTGCAGGATGTTGGTTATGAATATGAGCCTATTGATGATAAGCAGGAGTGTTC TTCTGTCTCTAATCTTACCACCGATAACTATGATACCAAGTTTTTAACTACTCAGGACTGCTGTATAAATAATGAATTAC AGAAGCCTATTGCAAGAAGTCAACGGTTTGGTGAAGAAATAAGCTGTAATGAACAGATATACTCCAAAAAAATGCAACAT CCTAGAAGTTCTGATTCTACAGTCACAGTGTCAAACCCCCAAACCACACACGAATGTTGTGCACAAATGGCAAATGAAAT GATTTGTATTCAGAATCAACTTTCAGACATGGAAATCAAACAAGCAAACACAATGCATCAATTACAGATGTCTATAACTG GAATAGTGGACGCTCTTTCTACTATCCAATCTAGAATGCTAAGCTTAGAGTATGCAGTTGATAGATTAAATCAAGAATCT TTGCAAGGAGGAAGACATTCTTATTCAGAAAACTCCAGGTTAGTGAGGCAGAGCCAAAATGTGGCTTCTCCTAAATTCCC CATATGCACTCCTAGGCCATCTGCAGAAATTAGTAATAAGCAATCAGCCATGTCGGTTAAAAATTCCGAAAGTTGGGAGA AAACTACGTTTTCAAGGAGCCAACCAAGGATTCATGTTGGAGATAGTGAGGATTTGTGGAAAAGTTGCAATGTAAATGTT GCCAGAAAGTTTACAGAGAAGGACATTTTGAATTGCTCAGGGAAGGATACACAAAGAACAAGTTCAGCTCAAATGAGAAA GAATGATGGTATCTTTGCTGCTAGAAACAGTTGTTCTGAGAGTAATACTAACCAGTGGAAATGTGTAAAGCGTCTTATAT GTGAAGGGGATCTAAATTCTGCATATATGGAAGCTTTGTGCTCCAGTGATGAACTAATTCTCCTTGAGCTTCTGAGTAAA ACTGGTCCAGTTATAGAAAGTTTATCAGTGAAGACTGTCAATGTTCTCTTTAGTACTTTAGCCTCATATCTTGTGGAAGC AAATTATTTTAGTACCATCATGCCGTGGCTGCAGCAGGTTGTTGACATGAGCACTATCCATGGACCAAATTGCATATCTC TATCTACTGACGCCAAGGAACAGCTTCTATCTGCAATTCAAGAGGCTGTGAACCTGAATATTTTCAGCCCCGCAGAAAGA AGGTGTGTTGCGGAAATAGCAATGAAGTTACATCATATGTGGGGTAAGATTATTGCAGGTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKKPQSQSHSHGGGKSNLEVKQRTALALNKVGDRDTQQIGLEELDRILQSLTPESISPFVSCIVDTDSDQKPAVRKECI RLIGTLATNYDASLVLPHLPKMVASIVKRLRDPDSVVRDVCVHTAGVLAGKLVNGNNKVFVVLVRPVFEALGEQNKHVQS GSGFCLARIVDNTRHPPVSLLHKMLSRTVKLLKNPHFMAKPALVELNRSIIQAGGAPTENFLSTAVASIQEALKDSDWTT RKAASVALGEIALSGASFLASLRASCVRSLESCRFDKVKPVRDAVLQALKYWRIVPGSNTPEPSETGSSLKENICGGDSA DLSSTTTESRQRDFKHQNVNMKSSMGRIPLSARKGCQNYVGNPHNLKPDDWHVEIAVPRIRSTAEFQNEESDCSSVSKLM ETMSADVTSLQDVGYEYEPIDDKQECSSVSNLTTDNYDTKFLTTQDCCINNELQKPIARSQRFGEEISCNEQIYSKKMQH PRSSDSTVTVSNPQTTHECCAQMANEMICIQNQLSDMEIKQANTMHQLQMSITGIVDALSTIQSRMLSLEYAVDRLNQES LQGGRHSYSENSRLVRQSQNVASPKFPICTPRPSAEISNKQSAMSVKNSESWEKTTFSRSQPRIHVGDSEDLWKSCNVNV ARKFTEKDILNCSGKDTQRTSSAQMRKNDGIFAARNSCSESNTNQWKCVKRLICEGDLNSAYMEALCSSDELILLELLSK TGPVIESLSVKTVNVLFSTLASYLVEANYFSTIMPWLQQVVDMSTIHGPNCISLSTDAKEQLLSAIQEAVNLNIFSPAER RCVAEIAMKLHHMWGKIIAG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR31355:SF22
15 817 803 0.0 –
Gene3D
G3DSA:1.25.10.10
15 135 121 8.6E-9
IPR011989
PANTHER
PTHR31355
15 817 803 0.0
IPR033337
SUPERFAMILY
SSF48371
35 297 263 1.15E-29
IPR016024
SMART
SM01349
43 284 242 0.0016
IPR034085
Gene3D
G3DSA:1.25.10.10
144 295 152 1.5E-5
IPR011989
MobiDBLite
mobidb-lite
298 332 35 - –
MobiDBLite
mobidb-lite
299 327 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005874
Cellular component Microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
Subterm of
Part of
GO:0008017
Molecular function Microtubule binding Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0235300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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