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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0239700 |
Transcript ID | LotjaGi2g1v0239700.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kinase family protein; TAIR: AT3G27560.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q2MHE4|HT1_ARATH Serine/threonine-protein kinase HT1; TrEMBL-Plants: tr|A0A151RNA2|A0A151RNA2_CAJCA Serine/threonine-protein kinase HT1; Found in the gene: LotjaGi2g1v0239700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70072375..70074363) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATCTGGCAATGAGGTTCATTCAGTTGGTGAGTTCAATTTAGATGCCAAGTGGCTTGTAGATCCCAAACAACTATT TGTTGGGCCAAAAATTGGGGAAGGTGCACATGCCAAAGTCTATGAGGGAAAGTAAGTCAAACTTGATTATTTGATTGTCT GATCATGATTTTTTCTCTTTTGAGTTAGATGGGAAAGGGGAGATTCTGTTTTTGGAATCAATTGTGATTTTTGAATCCTC TTTGAATGAGATTTGGTGTAAAGTTTGTTTTGATTTCTAAGTCAGGATTAATCTGCTTCTCCTTTGATCTAGATTTGTAT CCATTTTCACAGTCATTGTTTGTATTTGATCTGTTTGGACAAATGCATATTCTGCATCCACTTGATAGGATTATTTGCTG ACTTGTTGAGTTACTATTGTTGAATTTTCTGGTTGCAGGTATAAAAATCAGAATGTTGCTGTTAAGATTATCAATAAGGG AGAGACCCCGGAAGAGATTTCAAGGAGAGAGGGTCGGTTTGCTAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAGA ATCTGGTTAAGGTTGTTACACCAAAGCAGAAACAGTATTGTTTTCTTCAATTCAGATCTTGTTAGATTTATACTTAAATT AACATTGACTATAAACTGATGTTAAGCGGTGCCTAGATCATGTTGGTATTGGTGAACTGGAGAAAACTGTGTCTGATATA AGGTTCTGTTGTTTGCTTGATGCCAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTGACTGAACTTCTATTA GGTGGAACATTGCGCAAATATCTCATGAGTATGCGTCCAAAATGCTTGGATATTTGTGTGGCTGTTGGATTTGCTCTTGA TATCGCCAGAGCAATGGAATGCTTACACGCCCACGGGATCATTCATCGTGACCTTAAACCTGGTATGCCTGCATAATTGT TGGGCTTCTTAGTTTTTCAAGTGTAAGCTGGTAGCACTTAATGGAAAAAAAATTAGGACTTAGCTATAATTTTTCTGAAT TTGCATCGTGCACGAGTTACATGCACCTTAGTTACAAGCAAATATATAAATGACACTTTTTCTTTGTTGGCTTACATGAT CTCTGTTCAAATGGAAAAGTAGTTTAAAAGATGACTTTGTTATTGTTAATGAACTTTACTATGAGCTACATCTACTATTC ACAAATAGGCTCTATTTATGGAGTTTTATATTGTACATTTTTGTAAGGTTATCTATCTTTTCCCTTTATGTAGTTCAAAC TATGATTAAACTATCATTCTATGATTAAACTATCATTCTATCCCTTTCAAGGCTAAAAAATCTGTAAAAAAACATTCTAT GCAATGGAGTTTGAGATGAGAGTGAAATTTTATAAGATACAAAGCTTCTCATTATCACTCAATTGATGGTACAATCAAGC AGTATCTGACTATCTGTTCTCTGTATGAAAGAGCAAGCATAATTCTGATATCTTGTTTCCTTCCCAGATAACTTGATATT GACAGCAGATCATAAGACAGTCAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTG AGACAGGAACATATCGCTGGATGGCTCCAGAGGTATTTCTTAGTTGCTTAAAACTTACAATATTTATTAATTTTCCATTT GTGTGGTGCCATGTTAGTAATTCATCGTTACTTTCCTTTTTGGTGGCTAGCTTTACAGCACTGTTACTCTAAGACAAGGT GAGAAGAAGCATTACAACCATAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTGCC CTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGGTAGATGACATTCTGATGTTTCTTTGATAAT AATTTATACAAGATGATCATACTTGTTCATTCTATGGCTACTAGTCAAAGGTCTTCATTCCAGCAGTAG
CDS sequence (LotjaGi2g1v0239700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCTGGCAATGAGGTTCATTCAGTTGGTGAGTTCAATTTAGATGCCAAGTGGCTTGTAGATCCCAAACAACTATT TGTTGGGCCAAAAATTGGGGAAGGTGCACATGCCAAAGTCTATGAGGGAAAGTATAAAAATCAGAATGTTGCTGTTAAGA TTATCAATAAGGGAGAGACCCCGGAAGAGATTTCAAGGAGAGAGGGTCGGTTTGCTAGAGAGGTTGCTATGTTGTCGAGA GTTCAACACAAGAATCTGGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTGACTGAACTTCTATTAGG TGGAACATTGCGCAAATATCTCATGAGTATGCGTCCAAAATGCTTGGATATTTGTGTGGCTGTTGGATTTGCTCTTGATA TCGCCAGAGCAATGGAATGCTTACACGCCCACGGGATCATTCATCGTGACCTTAAACCTGATAACTTGATATTGACAGCA GATCATAAGACAGTCAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGG AACATATCGCTGGATGGCTCCAGAGCTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCATAAGG TGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTACAG GCAGCATATGCAGCTGCTTTTAAGGTAGATGACATTCTGATGTTTCTTTGA
Protein sequence (LotjaGi2g1v0239700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSGNEVHSVGEFNLDAKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREGRFAREVAMLSR VQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLMSMRPKCLDICVAVGFALDIARAMECLHAHGIIHRDLKPDNLILTA DHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQ AAYAAAFKVDDILMFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 248 | 248 | 6.5E-144 | – | |
PANTHER | 1 | 248 | 248 | 6.5E-144 | – | |
Gene3D | 7 | 105 | 99 | 3.4E-23 | – | |
PIRSF | 9 | 249 | 241 | 5.8E-43 | – | |
SUPERFAMILY | 17 | 245 | 229 | 2.83E-63 | ||
SMART | 26 | 256 | 231 | 1.5E-42 | ||
ProSiteProfiles | 26 | 256 | 231 | 38.167 | ||
Pfam | 30 | 242 | 213 | 1.2E-47 | ||
CDD | 32 | 248 | 217 | 1.16436E-88 | – | |
ProSitePatterns | 32 | 53 | 22 | - | ||
Gene3D | 106 | 251 | 146 | 4.8E-40 | – | |
ProSitePatterns | 146 | 158 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi2g1v0239700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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