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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0244300 |
| Transcript ID | LotjaGi2g1v0244300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT1G10630.1 ADP-ribosylation factor A1F; Swiss-Prot: sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1; TrEMBL-Plants: tr|A0A0D3EVD4|A0A0D3EVD4_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi2g1v0244300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70816909..70819822) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTTGACGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTTTGATGGTGGGTCTCGATGC TGCTGGTAAGACTACCATCTTGTACAAGCTCAAGCTCGGTGAAATCGTCACCACTATCCCCACCATTGGTTAGTTCACTT CCCTCTTGGTTATGCTCATCGTTAATTTTTCCCCTTTTTATTATTATTTTAAATTGTTCCAGTGATTTCACTTTACTACA TGTTTTTCAGTTTTCTATTATCTGTTGTTATAATTATGTAGATCACATACTTCAAAATTGTTTTTTTTGTTTAGATTTAT GTGATATTTGTGCTTTTCATGATTCAATTATATGAAAAATATGAATTTGTTGAGTTTAGATGAACAAAAATATGTTTTTT TTGGGGGTAAAATCTGACACGATGGGTCTTTTCTTCCTATGAAGTCACATCAGTACTTAGTGGAGGTGGAAGTAAGTGGA GTAGCATATAGGTGCAGCTTGTTCAGACCACTTTTAAGTAGTTGTATATAGATTCAATGATTGGATCATTAGAAATTGCA TCCTATGTTTTAAAAATTTATCCGAACAAGCCGGGAGGGAGGGACATGCAACAATATCCCGAACGGGTGCCGGCATCCGT CAAGGACCAAGAAAAAAAGTTATTGGGTGGAATATATAAATTTCACCATTTTAATTGATCCTTCCTCTGTACACACAAAT ACCAACACTATTGTTTTGATTTCTTTGATTTTTGTTTTTGTTTTGCATTTCGGGTACCTTTGCAACAGTTTTATTGATAA CTATGGAGATTAAGGTGTTTTGAACTGGGTTTGATGTCTTGGTTGCTTACTAAAATGGCTCGGAGGATGTGTTTCTGGAT GTTCTTATGGCATCTGATGTTGTATTTTCCTAAAATAATGGAAATTGTTATTTCTCTGCAGGGTTTAATGTTGAGACTGT GGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGGGGTCAGGACAAGGTACAGCTTTTCTTCCATATTTGTTTAT GCTTGTTTGTTCTTATGATAACAGAGAGGTTGTAGAAGTCATGTATGGCTATGATTCACAATCTTAAACTGTAAATCATG TCCTCACTCTATTCAAATTCCAAGCTCTATATCTCTGCACCTGGTTTGATTGATCTATTAAGTTGGGGATTTATCTATCA ATTTGAGGGTGGCTTGTATATTTGTTAGTTACCAATTTTTGATCTAGGAAAGTGCATTGGCATTGCTTATGCTTCTCTCT TTTTTCTTTTTGGTGATGGAAATAGGAAGTGTGGGTGTGGGTCTGCACTATTATTAAGTGACAAACTGAAGAATAAAAGA GGAAGCAAAAAGGAAAGAGGGTGGGGGTTGGGGATGGGCTCATCTATAATATAATTGATTTTGCTATAGTTTTATGCATA TGATTTGATTAAGAAGATGTATGTATCCACACAACTTTATTTTGTTTTTAAATCAGTTGTGGATCATTCTTATTTTGGTT GATGTTGAATATGTATCTTTCCAGTTATTTCTATGCACCAGCTACCATGCATGGTTGTGGGATCTTTTCCCAGTGTTTGA AGTTGTGTATGATTGCATTCCATTTGGGCATCTTTTCGTCTTTTCTTATACAAGGGTTTGAATGATTTTTGAATAATGTT AGTTTCTATCTGCAGATCCGTCCACTGTGGAGGCACTACTTCCAGAACACTCAGGGACTTATTTTTGTGGTTGATAGCAA TGATAGAGACCGTGTTGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGTATGTGTCTTTTAGAGCCATGTAT TTTTTTTTTGTTATCTTATATGATTTTATTATTTCGTGCCCTTTCTAGATCACTTTTACATGTTGTGCAAGACATTTGGA AATATCCTATTTGTTTTTTGGGGCTTTCTTTTTGCTAAGCGTATTAACTATTAACTATTAAATGCATGCTTGGTGGTGGT GACAATTTTTCTGGGCGATCGTTTTGTTTTGCCAATATTTTTTTGGGCTTCTTAAAGACATGTGATCTTGTGTTGTTTAA TCACACCATGTAACACGATTTGCATGGTTTCACCCCATTACCGTGCTGATATTTGTTATCTAATTTTTTTACCCATGATA CGTGATTGAAGGCTGTTGGAATTGAATGGAAGTGTTAGTTATATTAGTAATTAATAATATTGGTATGTGAATCTGAATGT CAAGTTTATTTCAGGATGAACTTAGAGATGCCGTCTTGCTTGTTTTTGCCAACAAACAAGATCTTCCCAATGCAATGAAT GCTGCTGAAATAACTGACAAGCTTGGACTTCATTCACTCCGCCAACGCCACTGGTATGAATATGTGACTTTTGGCATTGA AATGAACTTGCAATTGTGCAGTCTTGACTTAGCTCAAACTGGGAAGGAACTTTCATGAATTATTCTGCAACTCCATCAAC TAATGACCAAGAGACTTACCTCGATTAACAAGTAACAACCCTTTTTCATGCAATGGCTTGATTTATTTCAGGTATATCCA GAGCACTTGTGCAACATCTGGAGAGGGTCTCTACGAGGGTTTGGACTGGCTTTCCAACAACATTGCCAGCAAGGTAAGCC ACGATGCTGTATCTCTAATTATAAATTTCATTGTGAGCATGATACCATTTGCATGACTTTTATGGTCAATTTGGTAATTT CCACCTTCCCTCCTGTGGTTATTTGGAACAACATTGTTCTTTAAGCTTAAATGGACTATGGTTTATGTTTAAAATATTTC TATAATCCCTCAAAAGTTTGTCTTAGTCTGAACAACTTCTTGATTAATATTTTATTAGTAATGTGGATATTGACTAACCT GCTTTTTCTGTTTTCTTAGGCATGAGACATTTGA
CDS sequence (LotjaGi2g1v0244300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTGACGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTTTGATGGTGGGTCTCGATGC TGCTGGTAAGACTACCATCTTGTACAAGCTCAAGCTCGGTGAAATCGTCACCACTATCCCCACCATTGGGTTTAATGTTG AGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATATCCGTCCACTGTGGAGGCACTACTTCCAGAACACTCAG GGACTTATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGA GGATGAACTTAGAGATGCCGTCTTGCTTGTTTTTGCCAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATAA CTGACAAGCTTGGACTTCATTCACTCCGCCAACGCCACTGGTATATCCAGAGCACTTGTGCAACATCTGGAGAGGGTCTC TACGAGGGTTTGGACTGGCTTTCCAACAACATTGCCAGCAAGTAA
Protein sequence (LotjaGi2g1v0244300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDIRPLWRHYFQNTQ GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL YEGLDWLSNNIASK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 5.4E-144 | – | |
| SMART | 1 | 174 | 174 | 5.2E-124 | – | |
| PANTHER | 1 | 174 | 174 | 5.4E-144 | – | |
| SMART | 1 | 171 | 171 | 6.7E-20 | – | |
| Pfam | 5 | 171 | 167 | 4.1E-72 | ||
| ProSiteProfiles | 11 | 171 | 161 | 23.079 | – | |
| SUPERFAMILY | 14 | 171 | 158 | 6.21E-52 | ||
| TIGRFAM | 16 | 151 | 136 | 1.2E-16 | ||
| Gene3D | 18 | 171 | 154 | 3.2E-63 | – | |
| CDD | 18 | 170 | 153 | 1.66281E-118 | – | |
| PRINTS | 19 | 42 | 24 | 1.7E-7 | ||
| PRINTS | 113 | 134 | 22 | 1.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0244300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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