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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0245100 |
Transcript ID | LotjaGi2g1v0245100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cinnamoyl-CoA reductase; TAIR: AT5G14700.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q0JKZ0|SNL6_ORYSJ Cinnamoyl-CoA reductase-like SNL6; TrEMBL-Plants: tr|I3T8X3|I3T8X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0245100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70980618..70981662) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGAGATTGAAGTCAGAGTGGCAGAGAATGTGATGGAAGCATGTGCTAGTACATCTTCGGTTAAAAGATGTGTGTT CACATCATCACTATCAGCTTGTATGTGGCAAAATAATGCACAATCAGAAACCTCCCCTGTTATTAACCATGAATCTTGGA GTTCTGAATCATTCTGCATAGAAAAGAAGGTAAAATTCCACAAAGCAATTGCACTTGATTTATTTACTTTGTTTGTTTTG TTTTATTTGAGAACCTCTTATACAACATGTTTATCTGACCTTGCTCTTTCTTCATGGCAGCTTTGGTATGCATTAGGCAA ATTGAGGGCAGAGAAGACTGCTTGGAGGATAGCTAATGAAAGGGGTTTGAAACTCACTAGCATTTGTCCAGCTCTCATCA CAGGTCCTGAATTTTATCAAAGGAATCCAACAGCAACAATTGCTTACCTCAAAGGTACCATGTTACCAAAATCATTGTCC AATTTCTTCTATCCATTTTGGGTGTGTTTGGGCAAAAAGCTTAATTAAGTGCTTATTCGTAAGCTAATATGAGAAACTTA TTGAAATAAGCTGAAAATAGGTTACAGCTTGTGAAAATAAGCTTAAAACGACTTATATGTGAGCCATGAGCTATTTACAT AAACTGTCTCAAATACTTGCATAAGCGTTTATGCTAAAAGAAAAGCTCCAATAAGCTTTTCCAAACTTAGTCAAACATAG AATCTAAACTTTTCCAAATGCTAATGCAGGAGCTCAAGAAATATATTCTAATGGTTTGCTAGCAACAGTTGATCTAAAGA AAGTGGTTGAAGCTCATTCGTCTGTATTCAAGGCAATGAACAACAATGCTTGTGGGAGATACATTTGCTTTGATAATGTG ATTGGTACACAGAGTGAGGCAGAGAATTTGGCCAAGGAGATTGGTATGCCCAAAGAGAAAATATGTGGGGATGAATCTAA CAATTCATTACATAGATTTGAACTGTCAAATGAGAAGTTATGCAGACTCATGTCAAGGCCAATCAGGTGTATCAGTGAAT ATTAG
CDS sequence (LotjaGi2g1v0245100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGATTGAAGTCAGAGTGGCAGAGAATGTGATGGAAGCATGTGCTAGTACATCTTCGGTTAAAAGATGTGTGTT CACATCATCACTATCAGCTTGTATGTGGCAAAATAATGCACAATCAGAAACCTCCCCTGTTATTAACCATGAATCTTGGA GTTCTGAATCATTCTGCATAGAAAAGAAGCTTTGGTATGCATTAGGCAAATTGAGGGCAGAGAAGACTGCTTGGAGGATA GCTAATGAAAGGGGTTTGAAACTCACTAGCATTTGTCCAGCTCTCATCACAGGTCCTGAATTTTATCAAAGGAATCCAAC AGCAACAATTGCTTACCTCAAAGGAGCTCAAGAAATATATTCTAATGGTTTGCTAGCAACAGTTGATCTAAAGAAAGTGG TTGAAGCTCATTCGTCTGTATTCAAGGCAATGAACAACAATGCTTGTGGGAGATACATTTGCTTTGATAATGTGATTGGT ACACAGAGTGAGGCAGAGAATTTGGCCAAGGAGATTGGTATGCCCAAAGAGAAAATATGTGGGGATGAATCTAACAATTC ATTACATAGATTTGAACTGTCAAATGAGAAGTTATGCAGACTCATGTCAAGGCCAATCAGGTGTATCAGTGAATATTAG
Protein sequence (LotjaGi2g1v0245100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEIEVRVAENVMEACASTSSVKRCVFTSSLSACMWQNNAQSETSPVINHESWSSESFCIEKKLWYALGKLRAEKTAWRI ANERGLKLTSICPALITGPEFYQRNPTATIAYLKGAQEIYSNGLLATVDLKKVVEAHSSVFKAMNNNACGRYICFDNVIG TQSEAENLAKEIGMPKEKICGDESNNSLHRFELSNEKLCRLMSRPIRCISEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 211 | 211 | 7.2E-39 | – | |
PANTHER | 1 | 211 | 211 | 1.9E-92 | – | |
PANTHER | 1 | 211 | 211 | 1.9E-92 | – | |
SignalP_GRAM_POSITIVE | 1 | 42 | 42 | - | – | |
Pfam | 3 | 111 | 109 | 1.1E-5 | ||
SUPERFAMILY | 3 | 200 | 198 | 2.03E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi2g1v0245100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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