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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0249700 |
| Transcript ID | LotjaGi2g1v0249700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT3G28150.1 TRICHOME BIREFRINGENCE-LIKE 22; Swiss-Prot: sp|Q9LRS2|TBL22_ARATH Protein ALTERED XYLOGLUCAN 4-like; TrEMBL-Plants: tr|K7MVW5|K7MVW5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0249700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71539155..71542554) extracted from Lotus japonicus Gifu genome v1.2.
GATGACATTTATGTACCATTTTTTTATTTTAAAGATGAATAAATAGGGAAAAACAAACAAACATTACTACACACCTTTTC TTACCCTTAAACTTCCTTTTACATGACCAGATATCATTTCCTCTGTTAATATAAATCCCCTAAACTTCTCTGATGGAAGA AAAACTTCCATTTTTTCCTCTGATCATGGTTCATTGATTTATGCTCTCATCATGATTCTCCCACCATTATAAACCCCACC ACTCCCTCCCCTGTTTCTCTTCTGTGTTGTGTATGAGTGGTGCTTTAGAAAATACCATGAAGACATCTTCTACTACGCTT TTTCACAATCATAGCCATGGCAAAAGGGATCAGAGATGCATGAACATGGGAATGGGGATGCCTTTTGTTTTGACCTCTAT TTCCATGGCCTCCATTTTCTGTTTTTTCTTCCTCTTCTCTCCAAACCCTTTGACCCTCGTGCCCGATCAAGACCGTGACG TGTTTGAAAATCATCCCCAACAAAAAGAACAACAACATGTCATGACCATGATACCAAAGCCTTCATCACCCAAACCACAT AAGGGTATGTAAATGTTCAAAAATGATCATTCCCATTACCAAAATTTCTCCCTTTGATCAGTTTGGAACAATGAATTTTA ACAAAGTTTGTATATTCAATTATTTTTGTTTTGTTTGCAGTGCAGAAATCATGTGACCTGTTTAAGGGTCATTGGGTTCC ATCTTTAGGAGGATCATCATCCTATTACACCAATTCAAGCTGCACCACAATCCCTGAGAGCAAAAACTGTTTCAAGGAAG GGAGAAAGGACAGTGATTTTCTCAATTGGAAATGGAAGCCTGAGCAGTGTGAGCTTCCGAGGTTCGACCCGAGAACATTC CTCCACATGGTTCGCGGCAAGAAAATGGCATTCATTGGTGACTCTGTTGCCACAAACCACATGGATTCCCTCCTCTGCAT TTTGTCACAGGTCAGTGTCAAATGGTACGGACTCTAAAGTCTAAAGAAATTCCCTTGTTTTTCACTCAATTACCAATTTC ACTTCAAGTGCATGTTGTTTTCACACGTTGCACCCTTAGTTTTGGCTTTTGTAGAGTTGAAATTCTTTGCTTGCTTTGTA AGGGGAATGTGATTCTTGTAAAGAAGCTTGAATGTGATGTACCACATGCTTCTCTTATTTGTCTTTGTCCAATTATTTTC TTAGTTATCACTCAAGTAAATAAGTAAAACTCTGACTTTGTCTGTTTCTCCTTCAAGTGAAAAGGAGTGCAAGGGAAAAA CAAAACTTAATTGAATGTGATACCACACCACATGTATCATGTGTCTTGTTTGGAACTTTTGCCTCTTGTGGGCACTCCCC TAACTCGAAAAAAAAGTATATAATCACACTTAAAGGGGAACAAAACTAAGATAGTATTGTAGCTACAAACTTTGTTCAAA TTATGGTAGCTATCTGATCATGAACCTTGAAGTGCAGGGTGTAGGTACAGCATTATAAGAGTGAGGTGCAATCTATACTA AAAGAGTGCCCTAAAAGAGTTTTAAATCTTTGCATTAAAAAATAGAGCATGTGGTCCAACAAAATTCACATATGCTATTA GATTAAATTAAAGATTAGTCACAACATATGAAAGTGTATTAATCAATAGTTCTTAGAATTATGGTTAATTATATTTAATG TGATATGTCAACAATCCCATGTCTGGTGCTTTCTGATTGGAATCAGCATTAGGATTGCTGTATACTATGATGTCATGTCC ATGTTTATGTCAGTACCAAGGTATTAATCATTGACATTGCATGGATTCTTCTCTGTCTTCATATTTTACTCACATGATGT GTTTGGTACTGATAAAGGAAGAAATGTACTAGAGCAAGAAGGGACAATAAATGAGAATCATTCCATTTCATGTCATAGGA TCATAATCTGGGTCTTGAACATGACACTAAATGACTGTATACAATGATTCCCTTGATGGTAATAAGCTCATAGTAAATTC CTTTGATTGATATGTTTATAATGTTAAATGTGTCCCCTGAAAGTCCAAGTTTCTCTGATTTAATGCAATCATTAAGATCA TTGCCATGGATAATCCTTAACAGAATTTTCATGCTCCAGATTTTGTGAATTGATTGAGAAACTCTGGCTTTCACAGGGGT GTGAATGTGACAATTTTGTTCGAACTTTTGCAGGAGGAAGCACCAAAGGATATTTACAAGGGCTCAGAAGAAAAGTTCCA GAAATGGTATTTTCCTAACCATGACTTTACTATCATGTTGCTGTGGAGCAGATTCCTCATAGTAGGTGAAGAAAGAATGG TAAACGGCACAGGATCAAGCACTTTCGACTTGCAGATAGACAAGGTAGATGATGACTGGGCTAAAGAATTACCTGAATTA GACTATGCAATCATCTCAGATGGGCATTGGTTCTTCCGAGTGATGTACCTTCATGAAGCTTCAAAATTAGTAGGCTGTGT GTTTTGCAATCAACCAAATATCACTGACTACGGCGTAGATTCGATATTCAGAATAGCTTTCAGAACTGCATTCAAATACA TCAATGACTGCAAGGAGTGTAAGAAAACGGTCACATTAATGAGAACGTTCGCGCCGGCGCATTTTGAGAATGGGTTTTGG GACACAGGAGGGTACTGTAACAGGACAGGTCCTGTGAGTGAAGGGGAGGTTGATTTTGGAAGCTTTGATTGGAAAGCAAG GAATATTCAGATGGAAGAGTTTGAGAGAGCAAAGAGTGAAGGGAGGAAGAATGGGAAGAGGTTTGAAGTAGTGGATGTTA CTAAGGCTATGCTGATGAGACCAGATGGGCACCCTGGGGAACATTGGGGTAACAAGTGGATGAGGGGTTACAATGATTGT ACTCATTGGTGTTTGCCTGGTCCTGTTGATTTGTGGAGTGAGTTGTTGTTTGCTGTTCTTCAAAGGGAGGCTGGGATGAG TTCTGAACTTGAGGCACAAACTTAACAAAAGTATAGATAAATTCATTTGTATACAGCAGTAAACAATAATATTAGTGATA AATATCTACATTCTTTTCATTAGTATTTTTTGGTGAGCCTAAGAGTATCACCCGTGACTTGCACTAAATGGTAAGCGGTT GGTCATGAGATGTGCTCCATTCCCATGAGTGACGATCTAAACCTCGGTCTCATGGTTAAAGAATAAGGTGGGCAACCACT ATCCACCATGGCACATACTCATGGTTATTCCTTTCATAAGTATAAGACAAATAAGACAACAATATAATCGTAGTATTGGT TATTTCTTTTCATTAGTATAATACAGCAATATTAATGATAATCAAGTATACGAATTTTAAATTAGGATTGCAGTTGTAAT TGTTGCACTTATAGCCTATTTTATCATATATTAAAGTGAG
CDS sequence (LotjaGi2g1v0249700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGTGCTTTAGAAAATACCATGAAGACATCTTCTACTACGCTTTTTCACAATCATAGCCATGGCAAAAGGGATCA GAGATGCATGAACATGGGAATGGGGATGCCTTTTGTTTTGACCTCTATTTCCATGGCCTCCATTTTCTGTTTTTTCTTCC TCTTCTCTCCAAACCCTTTGACCCTCGTGCCCGATCAAGACCGTGACGTGTTTGAAAATCATCCCCAACAAAAAGAACAA CAACATGTCATGACCATGATACCAAAGCCTTCATCACCCAAACCACATAAGGTGCAGAAATCATGTGACCTGTTTAAGGG TCATTGGGTTCCATCTTTAGGAGGATCATCATCCTATTACACCAATTCAAGCTGCACCACAATCCCTGAGAGCAAAAACT GTTTCAAGGAAGGGAGAAAGGACAGTGATTTTCTCAATTGGAAATGGAAGCCTGAGCAGTGTGAGCTTCCGAGGTTCGAC CCGAGAACATTCCTCCACATGGTTCGCGGCAAGAAAATGGCATTCATTGGTGACTCTGTTGCCACAAACCACATGGATTC CCTCCTCTGCATTTTGTCACAGGAGGAAGCACCAAAGGATATTTACAAGGGCTCAGAAGAAAAGTTCCAGAAATGGTATT TTCCTAACCATGACTTTACTATCATGTTGCTGTGGAGCAGATTCCTCATAGTAGGTGAAGAAAGAATGGTAAACGGCACA GGATCAAGCACTTTCGACTTGCAGATAGACAAGGTAGATGATGACTGGGCTAAAGAATTACCTGAATTAGACTATGCAAT CATCTCAGATGGGCATTGGTTCTTCCGAGTGATGTACCTTCATGAAGCTTCAAAATTAGTAGGCTGTGTGTTTTGCAATC AACCAAATATCACTGACTACGGCGTAGATTCGATATTCAGAATAGCTTTCAGAACTGCATTCAAATACATCAATGACTGC AAGGAGTGTAAGAAAACGGTCACATTAATGAGAACGTTCGCGCCGGCGCATTTTGAGAATGGGTTTTGGGACACAGGAGG GTACTGTAACAGGACAGGTCCTGTGAGTGAAGGGGAGGTTGATTTTGGAAGCTTTGATTGGAAAGCAAGGAATATTCAGA TGGAAGAGTTTGAGAGAGCAAAGAGTGAAGGGAGGAAGAATGGGAAGAGGTTTGAAGTAGTGGATGTTACTAAGGCTATG CTGATGAGACCAGATGGGCACCCTGGGGAACATTGGGGTAACAAGTGGATGAGGGGTTACAATGATTGTACTCATTGGTG TTTGCCTGGTCCTGTTGATTTGTGGAGTGAGTTGTTGTTTGCTGTTCTTCAAAGGGAGGCTGGGATGAGTTCTGAACTTG AGGCACAAACTTAA
Protein sequence (LotjaGi2g1v0249700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGALENTMKTSSTTLFHNHSHGKRDQRCMNMGMGMPFVLTSISMASIFCFFFLFSPNPLTLVPDQDRDVFENHPQQKEQ QHVMTMIPKPSSPKPHKVQKSCDLFKGHWVPSLGGSSSYYTNSSCTTIPESKNCFKEGRKDSDFLNWKWKPEQCELPRFD PRTFLHMVRGKKMAFIGDSVATNHMDSLLCILSQEEAPKDIYKGSEEKFQKWYFPNHDFTIMLLWSRFLIVGEERMVNGT GSSTFDLQIDKVDDDWAKELPELDYAIISDGHWFFRVMYLHEASKLVGCVFCNQPNITDYGVDSIFRIAFRTAFKYINDC KECKKTVTLMRTFAPAHFENGFWDTGGYCNRTGPVSEGEVDFGSFDWKARNIQMEEFERAKSEGRKNGKRFEVVDVTKAM LMRPDGHPGEHWGNKWMRGYNDCTHWCLPGPVDLWSELLFAVLQREAGMSSELEAQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 12 | 445 | 434 | 9.8E-186 | ||
| PANTHER | 12 | 445 | 434 | 9.8E-186 | ||
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 34 | 55 | 22 | - | – | |
| Phobius | 56 | 457 | 402 | - | – | |
| Pfam | 101 | 155 | 55 | 3.9E-19 | ||
| Pfam | 156 | 441 | 286 | 3.2E-90 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0249700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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