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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0250400 |
| Transcript ID | LotjaGi2g1v0250400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P9WLH4|Y2228_MYCTO Uncharacterized protein MT2287; TrEMBL-Plants: tr|I3SU92|I3SU92_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0250400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71615682..71619742) extracted from Lotus japonicus Gifu genome v1.2.
TCTCCTGTCATTTCAGTCTCAGAGCGTCAGTTTCTGTCAACTTTGCTTCTTCTTCACGGTTAGAAACTCTAGTCTCTAGG GTTTTCAACATTTTTATTTTTCTCATCACTGTGAACTTGGTTTTGTCACTGTGTTTGCCCACTGTGCAACGATGAACTTC AAATGCTGAGTTATTTCATTTTTTGTGATTTTTGTTGATGCTTTAAACTAACATCACACTTTTGTTCTTGCTTGCAGTGT TGCTTCTAAGATCACCCACTTGTGCTTGCTTGCAGTGTTGAAATGGCTGAGGTTCGAGACACTCTTCGTTCTTTCACGTG TTGTTGAAGTGTTGCTTGCATCATTTTCATCATTTTGCTGTTTAAAAACTTTGATCTTGCTAACTTGAACTTCATGTTTC TACTTTTGGTCATCAGTTTTAATTTTTTTTAGCTTATGTTGATTCACTTGATTGCAATGCATATATAGGGTTCTTAACTT TTAAAAAGTTCTTAACTTTTTTGAAAAGTTCTTATCTTTTTTTGTTTTTTGGTAAATGACTAACTTCAAACTTTAGTTTA TGCCATTTGTGACTATGGCAAGTTAGCAAATGAAAAAAGTTTTAACTTCAACAAGAAATTTCATTTTGTTTCAGTATCCA TATGGTTCAAGAGCTTACCACGGGAATTCCTCATCAGGGGCCAGGCAATATAATACTAATGTAAGTTATCAACATTGACA TATCTCAACCTGGAAATTACACCTTAGTATCGCCAAAGAAATGCTATTTATTTATGTGAAACACACATCTGGAGCTCTTG TAAGATCTTTATTGGTGAGAGTGAGACAGGTGTTGAATAAATTGTTCCTGAGGTGCACCTTTAGGCAACTTTTTTTTTTG AATTCTGGCATCATATAATTCAAATCAACCTACAAAGTTTTTTCTGTCAATATTAACTCTGCTTAAGACATTTCATTGGT GAATTTCTGCCATAAGGATAGGTGTGAGACTGTGCGGGACTTGTTTCTTCATTGTTCAGTTATCGCTGATGCAACTTTTA AAATTCAAGCCTATTCTAGTGTTAATACATGGAGTCATGGATGTGTGCAAGTAATGGTTCCTGTAGCTGAAGGCTGGGGG CTTCACCATCAAGCCATAGATTAAATTGTTCTTTGTGTAGCCAATGCAACAGTCATAACAGATGTCCTGATGGAGGCTAA AGTATACTGTTGTGCTGTGTAATATCTTTCTGTGCTGATTGATTCAACTGGGTCTCATTTGTTGTTCAAAATGTTTGGAA AAAATTATGAATTTTTAAATTTTCATGACATTTTAAACTTAATATAATTTTTTCCCTTTTAACTTTGAGATGTGAAGTTA TATGTTGGCTCAGAGGGCTTTTAAACTGGATGGAAAGTTTCAGAAATTTTTCTTTGAAATCAATCAATGCATTTGAGCTT TTAGACAGGATTCATTACATATTTATGCTGATCTTTCTTGATTGATTCTCCACCTCTCTTCTTAGCTGGATTATTTGGCA TACTTACAACAACAAAGCTTTCTTGCAGCTTTCTTGTATCCTTGAGTTTGATGGTGCTTCCAGAGGAAATCCTGGACCGG CTGGTGCCGGAGCTGTGCTGCGTGCTAAAGATGGGAGCAAGGTGTCTACTGTATACAGCAATTCATTTTGTTGATATGTG CTTTAACAAATGTAGCTAACTCTTATGTATCATTATAGGTCTATCGGTTGCGTGAAGGAGTTGGCATTCAAACAAACAAC TTTGCTGAATATCGAGGTTTAATTTTAGGACTAAAACATGCTATCCAGGAAGGATACGAGCACATTGATGTCAAAGGAGA CTCCATGCTTGTTTGCAACCAGGTTTGGCATCTGTTCAGTTTATGCATTGTTCTTAATAGGTTTCAATATTGTGAGTTGA GATTTACCAACAACGATTACTCTTCAGTTTTTCATACAATTTTTTCTAACCAGTTTACTATCTGATGTGATTGCTTTTGC AACAGGTTCAAGGTGTTTGGAGAATCAACAATCAGAATATGGCTTATTTGTGTAATGAAGTGAAGGAGCTGAGGAATAGG TTTCTATCATTCAAGATTAGTCATATTCCTAGGGTACCTACTTACTCATTTGGTCCAAGTTTTATATTTATTTACAAAAG TGAAGAAAATTTTGGCTAAATTGTTCCCTTCACCCATATGGGTAATGCTAAGTGGACATCTCTGGATAAACAAAAGATGA ATCTTGAAAATAAATTCACTAGCATCTGACAATCATTTATATGTGATAAACACTGGAATCAACAGTGAAGAAGACAAATG TAGAAACTGAAAGCTAACCAAGAATCACTGAGATTCCAAGCTAGAGATGAATTGTATTGATAGAAATTGGGGAAGAACAA TTAGGGTTTACAACTGATTTCCCAATGATCAGTTCCTGGTTCCACAACCAGTTCCAAATTCTACTTTCCCAAAAGATGAC TTCTACTACAAGTTTCAGCTATTTATAGCCTATTGAACTAACAGCTCTCACTGCCAGCTAACAACTCTAACAAACTCTAA CCGCCAGCTGTCAACTAGCTGGCTAATTGATTTATTACACTTTAGTCCTTAGACTATGCTTTCACATAACTCTAGTCCTT TTCCTAACATACACATGTTTAAGGGCTGGCTTAGCCCTAGACCTATCAATATGTCATAGTGTTTCCCATGGATTTTTAAT TCTCATGCCTACCTATAAATGAGGCCATGTGATCCAAATGCTCCAGTAGCTAAATTATCTACAATAAAAGTCCTGGTTCC AGTAATAACTAGACTTTGACCAGTTTCCTACTATTATTGCTTAAGCTATGTGTCCTCAAAGTATTTGTGTGTTGTTAAGA ATTAAGATCACTAGCAGCTTAAATAGTTTATATGAATATTTACATGCAATTCTTACTAATTTTATAGTTTTTTAAATGAC AACTACCCTTATTTTTTGCCTCACTTTTTTTGTGATGTTCAAGGAATATAACTATGAAGCTGATGTTGAAGCAAATCTAG GCGTAAATCTCCGAGGTAAAGACCCCAAGGATTTCCCTATACAGTTCACTTCTTTGCTTCTCTAATAAATGAGAATCCAT TTAGTAAGATGATTTGCAGCTAAGGCTGCTCTGAAACCTAAAAGCTGCTGTTGTTTGTATTTGAGTATAATTTTCAATTG ATATGTTTTCATTTTGTAACTATAATAATGCTACCTTTTCTGCTTACTAAAAAATACAGGAAGAAAATAGTGTTAAGTGA ACAACGTCTTAGCTTTCCGTAGGTTTTAATTTCATATCTACTTTTGGAAGGGGTAAATAAATTTTCTAACTGGATCTTAA ACTTTTGCAGCTGGTCAAGTTGAAAAGAACGTGAGATTCCTTAATGGATGACTGGCAGTATCAAGCATTATCAGTTTCCT TTTGCTTTCAGCTATTGGAAATTTGGATGCTGTAACAAAGAAGCCAGTTAAATTTCTAACTAAATATGTTTTATGCCACT CTTTTTCTTGTGTTGGCTCTCTCTAATTCAGCCGTTTGGATCAATTACTGTTAGCCGTTTTGTCTGTTTGACTATGCATA TCGTGTAGATGCTCACGATTGGGGGACTAAAAATAGTACTGCTGTTATGTTTGGATGGCATTGCCTCAGCTAATGCAAGA CCTTATTATAAGTATATGTGGAGTCCTTCAGTCGTTTTGAATTAAGACTTAGACTCAAGCTATTTAGTGTTGCATGTTCT TAAACTAAAATTGTGAAAATTGTTATAGAAAAGTGATTCAAAGAAAGTCATTTTTTGTTGTTGAGGATGAGCAGGTAAAT GCCGTCACAATTGGGGACTGCCTGTTAAGCCTTCAAATATTTATTGTTGAGTGTTGACAAGGTTGATTAGGTACGGCTAA TGGATGAGTTGATTGAGATATTTGGTTGTATTTTTTTAGAAAATAAGAACAAGTACGCTTTGGAATTTTGTGATTATCAC TTGCTGCATAGTCTCTCCATTTTGTGACAATTTATTCATAAATAAAACTCCTTATTTGAAA
CDS sequence (LotjaGi2g1v0250400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGTATCCATATGGTTCAAGAGCTTACCACGGGAATTCCTCATCAGGGGCCAGGCAATATAATACTAATCTTTC TTGTATCCTTGAGTTTGATGGTGCTTCCAGAGGAAATCCTGGACCGGCTGGTGCCGGAGCTGTGCTGCGTGCTAAAGATG GGAGCAAGGTCTATCGGTTGCGTGAAGGAGTTGGCATTCAAACAAACAACTTTGCTGAATATCGAGGTTTAATTTTAGGA CTAAAACATGCTATCCAGGAAGGATACGAGCACATTGATGTCAAAGGAGACTCCATGCTTGTTTGCAACCAGGTTCAAGG TGTTTGGAGAATCAACAATCAGAATATGGCTTATTTGTGTAATGAAGTGAAGGAGCTGAGGAATAGGTTTCTATCATTCA AGATTAGTCATATTCCTAGGGAATATAACTATGAAGCTGATGTTGAAGCAAATCTAGGCGTAAATCTCCGAGCTGGTCAA GTTGAAAAGAACGTGAGATTCCTTAATGGATGA
Protein sequence (LotjaGi2g1v0250400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEYPYGSRAYHGNSSSGARQYNTNLSCILEFDGASRGNPGPAGAGAVLRAKDGSKVYRLREGVGIQTNNFAEYRGLILG LKHAIQEGYEHIDVKGDSMLVCNQVQGVWRINNQNMAYLCNEVKELRNRFLSFKISHIPREYNYEADVEANLGVNLRAGQ VEKNVRFLNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 164 | 146 | 6.9E-72 | – | |
| PANTHER | 19 | 164 | 146 | 6.9E-72 | – | |
| ProSiteProfiles | 24 | 155 | 132 | 14.976 | ||
| Gene3D | 27 | 159 | 133 | 8.6E-36 | ||
| CDD | 28 | 147 | 120 | 9.47781E-49 | – | |
| SUPERFAMILY | 28 | 151 | 124 | 2.28E-30 | ||
| Pfam | 32 | 152 | 121 | 6.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0250400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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