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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0250700 |
| Transcript ID | LotjaGi2g1v0250700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated family protein; TAIR: AT5G14920.1 Gibberellin-regulated family protein; Swiss-Prot: sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14; TrEMBL-Plants: tr|I3SNW7|I3SNW7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0250700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71629986..71633396) extracted from Lotus japonicus Gifu genome v1.2.
GTAATTTTAGAGCATTTAAGCATGTTGTCAAACATATTATAAGTAAATATCTGTTTTAAATTGAACTCAACTAAACGTCA ATGAAAATTTTGGGTTCATTACACGCCTTACAAACTTAGTTAATGTTTTAAACTAAATTGAACCAAATGACCAATACCAC TTGCCTTTGCCTATATGACTATATCCTAATGGTGCCATTCTGCTTTGACTATAGTGTTTGTCAAACCGAGGTGTCCTCAG AAGATATGTTATGAATTCTGACATATTCATCTAAAGCATTACTTGCTATGTTTAAAATTCCCAAAGACAGGCCTTGTGTT CAGTAGCGTAGATTAGTGGCAAGTGGCAACTCACCTCACACACTCTCACAACAAGAGCCTAGATATGCTAATTTACTATG CACAATGTTAGAGGCACGTGGGTTGGAAGCTGTATCAGTCAGTTTAGGAGACAGTACTGAGGCATTATTTCACACCAGCT ACCAACCACCGCTAACTTTTTCTTATCTCTCCCCCAACCTTGACCTCTATATAACACAACATCTAGCTAGTAATTGGTTC AATCAGCACTCACTAGAGAACCAATCACTTTTTCTCCTTCCTGAAATGGCTTTCAAAGCCATTCTTCTTCTGAGCATTTT TCTTGTGGTCTCCACTAAGGTATAACATAGTTTCATTCTGATGAGGAAATTACTTTCTTGTTCCAAGTGTTTTAGCTTCA ATATCCTATAACTTTGTTTTTAATATTTTTATGTGCAGGTTTTTTCCCATGATGAAGATCTCAAGATAGTGGTATGTTTG ATTAACTTTTGGTATCTAAACATCCTCATAGATAAACTTCATTTCATAAATTATTATCACTATCTGTATGATTTGTTTAT CTTTTTCTTTTATTATTAAGAGTGATCTAATGTAGCTTATTTTTCACTTTATCTTTTTAAAATAGGTTATTGCTGTTCTT TTATTAAAATACAAATAAACAACTCTGGTTTTCTAGTCCTGTTAATACTCCATAGTCCACTCAGTTAGCACACATTTAAT TAATTGTTTGTTGCTTTGCATTGAATAGAAATTGATTTCCCCCACCTTCACTCCTCTGTTTTTCATTTTTGTCATAATCT TTTCCCTCATATTTCCCACTTTTGATAACAAGGAGAATCTCTCACTTAACATAGATATGGAAAGATATGTCATATGTTAA ATCCATACACAGACAAATATAAAAGCAGTGTATTAGACTTTAAAAGTTATCAATTTTTCCATGCTAAAGGGCTAGAAATC TTGTATTTGGTACAGGTGAACTATGCAATTCCTTCAGTTCCTGCTCCTCCCTCACCAGTAAAACCACCAACTCCTTCAAC TCCAGCAGTGACAGTTCCCACTCCACCTCTAGTGAAGGCACCAACTCCACCACCACAACCACCCGTGAAGGCACCTTCTC CTCCCATAGTGAAATCACCACCTTACTTTCCACCACCAGTGAAGGCACCTTCTCCCCCCATAGTGAAATCACCACCAGTG AAGGCACCAACTCCTCCCATAGTGAAATCACCTCCTTCCTATCCACCACCAGTGAAGGCACCTTCTCCTCCCATAGTGAA ATCACCACCAGTGAAGGCACCAACTCCTCCCATAGTGAAATCACCTCCTTACTATCCACCACCAGTGAAGGCACCAACTC CTCCCCAAGTGAAAACACCTCCTCCTCATCCTCCTGTAGTGAAGCCCCCTGTTGCTCCAATTCCATCAACTCCCATAGTC AAATCAATGAAGGGTAAGTGAGTTACTAAATCATGTCTATGAAAACTCTCTTCTTCAATCTCTGTTGTAATTCATTGACC AAAAGAAAAAAAAAAATCTCTGTTGTAATTAATAATGATTCACATTTTTTTTTTGTATAATTTGTGCATAATGTTTATAA AGCAAACTTACACTCAATAATATCCCACAAAATTTAGTGTTTTTTTTCTCGAGCACAACGGCCTCGGAGGATCCATATAG CCGATTTCACTAAGATAAGAATTTTGTTGCTATACATAATGTTCAGGATTGATTCTTGATTAATTCTTAATGTTTGCTTA ATTTTAAGTGTTACTAGAATCTGATGAGCTAATTGACACTCTTGATTTTATTTTTATGGGCAGATTGCATTCCACTATGT AATTATAGGTGCCAATTACACTCAAGGAAGAATATGTGCACTAGAGCATGCATGACATGCTGTGACCGCTGCAAATGTGT CCCTCCAGGAACATATGGTAACCGGGAAAAATGTGGCAAGTGCTACACTGATATGTTAACTCATGGCAATAAGTACAAGT GCCCATAGATCCTAGATGCTATCTAATACCTATGCTTTTGTAATAGTAGTAATTGTATTTGAATTATTATGCGGTTTAAA GTTCTATAGTATATTTATTGCAGAGTGATCAGCATTAAATTATGCAAGTTACTATGGTGTTAATCAATTACTAGTACAAA GCAGATTGTAGGGTCTATGGGATACATATATACAATGTGGTCCTAGAAGGAGTTCAGTTCATGCTCTTATGATCAATACA TGGAAATATTTGCTTTCGAAATTCAGATGAACATGATATCGATAAATTTGATTCCTTTTTGGGCACATCTTTTTGAGATC TTATGAGGTGGGTGAGATAAATATCCTTGCTGTGTCCTTTTGTTGACATGGATTGAAGTATGGGGTCGCATTTTAAACCA TGCCATCTACCTATGTCAGAATCCCTTTAATGAAGTGTACCAAAAATTAAATAAAGCATGTCTTAATTCAAGGCACTAAC AATGCTGCCAGCTGATAACTATCCTTGCAAGTTGCAAATGAGAGTAGTTATTAGTTGTTACTCCCTATGCATTTACTTAT TTAGCCTATCTTAAGTGAATTGGATCTTCTAGGTTGACCTCTGCATCGGCAAAATGGTAAATATATATAAAAGTTTTAGA CTAATTTGACTTTTTATAAATCAATCTAAACTATTAGTATAAGAATTTGCTTCATGACATTTTGGTTAGGTTTGAGTTGT TCTTGATTTGTTGTATAGTTTACTCATACAAGAGAATTAGTCTCGCATAGCAATTTTTTCATGAATTAAAGTTGTGTTTT AAAAAAAAAAAACTTCATGAAGTAAATATAACTGCAGAGTATCGTGTTGATAGTTTGCAATTTTCCATATTAAACTTTTC CAGACCTCGAGCCATTTGAGACAAACCTAATTATCTACATGGATATATCTTAAATCCCAAGACAAAGGAGGCTACAGATT ATTCATATTAATGGAAGTGGGCAAGGCTTTCTTGATCTCTACAAGTAACCCATGCTATTGTTGGCAAGTAATATCATCCA CGTAGAAAATAAGCCTCACATATCTTATGATGTATATTTTTTTCAAAGCTC
CDS sequence (LotjaGi2g1v0250700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGAGGCACGTGGGTTGGAAGCTGTATCAGTCAGTTTAGGAGACAGTACTGAGGCATTATTTCACACCAGCTACCA ACCACCGCTAACTTTTTCTTATCTCTCCCCCAACCTTGACCTCTATATAACACAACATCTAGCTAGTAATTGGTTCAATC AGCACTCACTAGAGAACCAATCACTTTTTCTCCTTCCTGAAATGGCTTTCAAAGCCATTCTTCTTCTGAGCATTTTTCTT GTGGTCTCCACTAAGGTTTTTTCCCATGATGAAGATCTCAAGATAGTGGTGAACTATGCAATTCCTTCAGTTCCTGCTCC TCCCTCACCAGTAAAACCACCAACTCCTTCAACTCCAGCAGTGACAGTTCCCACTCCACCTCTAGTGAAGGCACCAACTC CACCACCACAACCACCCGTGAAGGCACCTTCTCCTCCCATAGTGAAATCACCACCTTACTTTCCACCACCAGTGAAGGCA CCTTCTCCCCCCATAGTGAAATCACCACCAGTGAAGGCACCAACTCCTCCCATAGTGAAATCACCTCCTTCCTATCCACC ACCAGTGAAGGCACCTTCTCCTCCCATAGTGAAATCACCACCAGTGAAGGCACCAACTCCTCCCATAGTGAAATCACCTC CTTACTATCCACCACCAGTGAAGGCACCAACTCCTCCCCAAGTGAAAACACCTCCTCCTCATCCTCCTGTAGTGAAGCCC CCTGTTGCTCCAATTCCATCAACTCCCATAGTCAAATCAATGAAGGATTGCATTCCACTATGTAATTATAGGTGCCAATT ACACTCAAGGAAGAATATGTGCACTAGAGCATGCATGACATGCTGTGACCGCTGCAAATGTGTCCCTCCAGGAACATATG GTAACCGGGAAAAATGTGGCAAGTGCTACACTGATATGTTAACTCATGGCAATAAGTACAAGTGCCCATAG
Protein sequence (LotjaGi2g1v0250700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEARGLEAVSVSLGDSTEALFHTSYQPPLTFSYLSPNLDLYITQHLASNWFNQHSLENQSLFLLPEMAFKAILLLSIFL VVSTKVFSHDEDLKIVVNYAIPSVPAPPSPVKPPTPSTPAVTVPTPPLVKAPTPPPQPPVKAPSPPIVKSPPYFPPPVKA PSPPIVKSPPVKAPTPPIVKSPPSYPPPVKAPSPPIVKSPPVKAPTPPIVKSPPYYPPPVKAPTPPQVKTPPPHPPVVKP PVAPIPSTPIVKSMKDCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | - | – | |
| Phobius | 68 | 87 | 20 | - | – | |
| PANTHER | 69 | 316 | 248 | 3.2E-53 | – | |
| PANTHER | 69 | 316 | 248 | 3.2E-53 | – | |
| Phobius | 88 | 316 | 229 | - | – | |
| MobiDBLite | 107 | 146 | 40 | - | – | |
| MobiDBLite | 165 | 204 | 40 | - | – | |
| MobiDBLite | 220 | 240 | 21 | - | – | |
| Pfam | 256 | 316 | 61 | 3.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0250700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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