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LotjaGi2g1v0256500.1

Overview

Field Value
Gene ID LotjaGi2g1v0256500
Transcript ID LotjaGi2g1v0256500.1
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|P42054|VDAC_PEA Outer plastidial membrane protein porin; TrEMBL-Plants: tr|Q6W2J4|Q6W2J4_LOTJA VDAC1.2; Found in the gene: LotjaGi2g1v0256500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:72284800..72288166) extracted from Lotus japonicus Gifu genome v1.2.

CTAATGTTCGTTTACACCTGATATTATCACGAAAAATGTCTCACGTATCAAACGGCCCCACATCTAAAACCCAAAAAATA AAATAAAAATAAAAACAATCACCGAAACCGAGTCCTGAAATTAGGGTTTCCCTTCCGCTCACACTTATATACTCTCCCAA AGGGTTTTCCACCGCATAGCTCATCGTCCTCGCCATTTCCAATTCTCTGCGAAGAAGCTATGGCGAAGGGTCCCGGTCTC TACACTGACATCGGCAAGAGAGCCAGAGGTACACCCTTCATCTTTCTTCACCCATCCTTCTCTTCAGAAATTGTAATCTG AGATTCTTGTTTTCGTTTTGATTGGTTGCAGATCTTCTGTTCAAGGACTACCACAGTGACCAGAAATTCACCATCACCAC CTATTCCCCTACTGGAGTTGTAAGTTTTTTTTTTTTTTTGGTTCATTTTCAGTTCTGATTAATCTTGCTTCATTTCATTT CTGTTTGGGAATTGTTTTGTTGTTATTGGAAATGGGTGGTGGGTATGGTTGTTGTATTTGAAGGCTTTACTGTGTTGTGG GTTATTGTTATTCAAGTGAATTTTGGGGTTTTGACTAGTTGCTTGGTGTTGAATGTTGATGCATGGTTGTGAGAATGATA CTTTTTTTTGTGACCCTTTGTGTATTGGTTGCTGATACAGGCTATAACCTCATCTGGGATCAAGAAAGGTGAGCTTTTTG TGGCTGATGTTAATACCCAGTTGAAGAACAAGAACATCACCACTGATCTCAAAGTGGACACTGACTCTAATGTAAGTTTA TGATTGCTTTTTTGGGGTGTTCTGTACTTGTTCACCATCATTTTTGTTGTTTTATCATGGTAGTTTAAATGGTTGCTCTA ATTTTGACTGGCTTTTTCTGTGGTACATTTTCAATTTGTAATTGTTTTGTGTGTGCGCGCCCACTCAGCTTTTTGATTAG TCTACTCCAGCAAGCCCTTCTATGTTCTGACTTCGAAGTTTGTAATTTAAGATAGAAGGGATAGGGCAGTTGCACAGAAC TACTGTTGAATTCCTTAATGCCAATTTAAGGGTTGTCTAAAGAAATTAGAAGTAGGAGATTTTGAAACAAATTCTGAAAT TTATGGTTTATGATATTGTACAATTGAAGTTGAAGGGCTTTGTTGAATTCCCTCTTTCTTATTTTATACATTACCTCTGT CATTATACAAATATCCACATTATACTTTCAAGTTTCAATACATAAAGATTGTTTGTTCTGATTTTGATTTCAGATTCAAT GAGCCTATATGGGTTAGGGACCTGTTGGTCTTTACATGTGGGCATATTATAATTCATTACTTACTATTAGTCTAATTCAA TATTCTGAAATTTGTTTTGATGCAAGCAATGTGGAAATGGACTGCTTTAAGAGTTTTTTTGTGTCCTGTGTATTGTTTTG ATTTTAAGGGAGTGCCATGTCAGGCTTTTATGCCTATACATGGTGATTGATATTGGGGGGCAATATAAACTTGAATCATA TGCTCCTTTCTTTCTATTGCATGTTACATGATGATTGATATTATGCTCGTTGCTATATATTGCTTTTATTTTTACTAAAG TTAATAATGCATATACATTCCAGCTCTTCACTACTGTCACTGTTGATGAGCCTGCTCCTGGCCTCAAGGCTATTTTTAGC TTCAGAGTTCCTGATCAAAGGTCTGGAAAGGTGAGATACGTCTATCATTTTTGTATTAGAAGCTTTGAGTCCACTGGAAA GTAGGAATTACTAATTTGAGAAACCAACCTCACTATTTAACAGGTGGAACTTCAGTACTTGCATGACTATGCTGGCATAA GCACCAGCGTTGGGTTAACACCAAATCCAATTGTCAACTTCTCTGGTGTTGTAGGAACTAATGCACTTGCCGTTGGTACT GATCTTTCTTTTGATACCAAAATTGGGGAGTTAACAAAATTCAATGCTGGATTGAACTTCACCAAAGCTGATTTGATTGC CTCACTGACTGTGTGAGTACTTGTTGTCTCATTCTCAGAGGTTTCTAATTGTCTGTTTATTTAATTTCAACTTCTTTAAG TTAGCCTTTACATGTGGGAGCTTGGGAGTTTTTAAATTAACCTTGAGCTTGTTTTGCTCATGGATGACTGGGAAAAAAGT ATTGCATTTTTCTAAGGATTCTGAGTTGATTAATGAACATTGTGATGCTCCATTCTACTAGTTCTCCCTTCTTTTCTTTG AGTTTTCTGTATACTTTTAGCCTAAGCCTACCTCACGTAGAAAGATGAAGCTTTGTGGTAGTGTTTCCTCAGGCCTGTAT TTGAACTGATTGAGCTCATGTGAGGTGATGTGATGAATTGTTTTATGCAGGAATGACAAAGGTGATGCCTTGAATGCTTC ATACTACCATATTGTCAATCCCTTGACCAACACAGCTTTTGGTGCTGAGGTAACTCATAGATTCTCAACCAATGAGAACA CTCTCACACTTGGCACCCAGCATGCATTAGATCCATTGACCTCTGTGAAGGCTCGCGTCAACAACCTTGGCAAGGCAAAT GCTCTTATCCAGCATGAGTGGCGTGCCAAGTCATTCTTCACCATTTCTGGGGAGGTTGACACTAAGGCCATTGAGAAAAG TGCAAAGATTGGGTTAGGTTTGGCTCTCAAACCTTGAGGAATTTTGAGCCATTATGGCAAGAGCATTGGGGTAGGCATTA GCAAAGCACATAGTTGTCTCTCAGACTGAATTTTCTTGCGGTTGGTTCTGGTTCTATTGGACATAAGTGTTCATGATGTT TTGGTTGCATTTGAGCAATTCAACGTTGTATAAATAAGCAATGGATTATTTCTATAAACCAAATGTTACTCTGAATCCCC ACAGCCTTTTGGAAATCTATTGTTTGGTGTCTGCAGTATTCTCCTTTTTTATTTCTTTGCATGTGATGACCGTTTTATTG ACTTGTTGCTTTCATTTTCTTTTGATTTCAATTGTTATAGGCAGCATCCTGCCAAAAAATGCTTCATTATTCTTTACAAA TTGTTATGACTTTCATTATTTGTAGGATCTGTAATTTGTATTACCCTTTTTGATTCTGTTGGCCTGTCTCGTTGTACCAA GTTGCCCTCAAACTTGAAAAATGTTGAATACTCCTGTAAGTAAAAATCTCTCGAATCCTTTGGAATTTAGCAAGTGGAGG TCAGAAATGTCTGCTAATACACTTGTATGCTAAGCTAGGCAAACACTTTGAAAGCTGCGCTCTTGTATATGAAGCTTTTT GTAGGCATGGAGATAAATAGGTAGTCATCAATTAATGAAGGCTGCATCACAATAAAAACTACTCCAGTTAACAGTTTTTT AAACTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAGGGTCCCGGTCTCTACACTGACATCGGCAAGAGAGCCAGAGATCTTCTGTTCAAGGACTACCACAGTGACCA GAAATTCACCATCACCACCTATTCCCCTACTGGAGTTGCTATAACCTCATCTGGGATCAAGAAAGGTGAGCTTTTTGTGG CTGATGTTAATACCCAGTTGAAGAACAAGAACATCACCACTGATCTCAAAGTGGACACTGACTCTAATCTCTTCACTACT GTCACTGTTGATGAGCCTGCTCCTGGCCTCAAGGCTATTTTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAGGTGGA ACTTCAGTACTTGCATGACTATGCTGGCATAAGCACCAGCGTTGGGTTAACACCAAATCCAATTGTCAACTTCTCTGGTG TTGTAGGAACTAATGCACTTGCCGTTGGTACTGATCTTTCTTTTGATACCAAAATTGGGGAGTTAACAAAATTCAATGCT GGATTGAACTTCACCAAAGCTGATTTGATTGCCTCACTGACTGTGAATGACAAAGGTGATGCCTTGAATGCTTCATACTA CCATATTGTCAATCCCTTGACCAACACAGCTTTTGGTGCTGAGGTAACTCATAGATTCTCAACCAATGAGAACACTCTCA CACTTGGCACCCAGCATGCATTAGATCCATTGACCTCTGTGAAGGCTCGCGTCAACAACCTTGGCAAGGCAAATGCTCTT ATCCAGCATGAGTGGCGTGCCAAGTCATTCTTCACCATTTCTGGGGAGGTTGACACTAAGGCCATTGAGAAAAGTGCAAA GATTGGGTTAGGTTTGGCTCTCAAACCTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQLKNKNITTDLKVDTDSNLFTT VTVDEPAPGLKAIFSFRVPDQRSGKVELQYLHDYAGISTSVGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNA GLNFTKADLIASLTVNDKGDALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11743:SF50
1 276 276 9.0E-175 –
PANTHER
PTHR11743
1 276 276 9.0E-175
IPR001925
Gene3D
G3DSA:2.40.160.10
3 276 274 3.8E-69
IPR023614
CDD
cd07306
5 275 271 9.00157E-92 –
Pfam
PF01459
5 269 265 5.4E-72
IPR027246
ProSitePatterns
PS00558
219 241 23 -
IPR001925

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005741
Cellular component Mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
Subterm of
GO:0008308
Molecular function Voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of
GO:0098656
Biological process Anion transmembrane transport The process in which an anion is transported across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0256500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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