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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0259400 |
| Transcript ID | LotjaGi2g1v0259400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|I1LWK4|I1LWK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0259400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72734029..72737401) extracted from Lotus japonicus Gifu genome v1.2.
GTCAATAACTTAACCATAGATTAGACACAACCAGGGTTAAAACAACAAGTGGTTAAGAAGGGACAACCACATAACAAGGA TTTTTATTATCAACAGTCCTCACTACTCACCATCAAACATCACCCCCTTCCTCCTCTTCCTCTTCCCCCTCCTTATGTAA GCTCTTTTTTCCTTCCTTTCAATTCCTTTCTCTTCTTATTCCTACCTTTTATACACCTAATAATAATTCCCTCAATTTTC CCTAGAAAGAAGAAAAAGTGTTATGTTATGTTATGAGAAGCAGCAAAACAAGCAGAAGAAACAGAATTCAATTAAAGGCT AAGGATTTGTGTTGTTAGATATATGTTAGAGAGATGGAGGTATTAACAACCGCCACAAACAACATCACTAGCACTGCGAA ATCGCCAGAACCCGAAACAGAAACACCGACCCGGATCCAACAACCCGGAAACGTAAACGCAACCGCAAAGCCGTTATCAT TCTCCAACGGCGTTCTCAAGCGCCACCACCCTCCGGCGCCACATGCAAACCACTCTCCGGTGACGGTGACCTACAAGGAA TGCTTGAAGAATCACGTCGCCAGCTTGGGTGGCCACGCGCTTGACGGCTGCGGCGAGTTCATGCCATCCCCCACCGCCAC CGCCGATGACCCGAGCTCAATCAAGTGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGGGAACCCGAAGAGCCGC CGATTACCGCCGCGCATCATGTTTTCGAGTACCAGCCGCACCACCGCCACCACCCTCCACCTCCGGTTCCGTTCAACCGG AGCCCCAATTCGGCGTCTCCGCCGCCGATCTCGTCCTACCCATCCGCCCCGCACATGCTACTTGCCTTATCCGGGGCGGG GCTCCCCGTCCCGCCGGAGAACACCGCCGCGCCGACGCAGACCCCTGGCTCCGATTCCCGGAAGCGGTTCAGGACGAAAT TCACGCCGGGGCAGAAGGAGAAGATGCTGGAGTTTGCGGAGAGGGTTGGGTGGAAGATGCAGAAGAGGGATGAAGATTTG GTCATGGAGTTCTGCAATGAGGTCGGTGTTGACAGAGGGGTTCTCAAGGTCTGGATGCACAACAACAAGAACACGTTCGG GAAACGGGATCATGCTGCTGCTAACGGCGGCGCTGGCGGCGGAGATGACGACGGAGCTGGTGGTGGTGAACGCGCAATCA ACGGTAACGGTAACGGCAGTGCTGCTTCACAGGATCCGAATCAGTATGAGAATGATAGCGGGACTAACGGTGCTACTAAT GGGTCTTCTTCTTCTTCTTAATCTTAATTTAAACAAAATTAAACAAAAAATGAGAGAGAGGAATAATGATAATAATTATG TTTAGATAGAGTAATTAAGAGCTGGTTACCAGTTAATTATTAGTTGTTTTTCTTAATTTTAATTGTTTAGTTTTTGTTAA TTAATGATCATGGTGGTGGTGGTGTTGGTCATCATCACCTTCTTAGCATGGGAGAGAATTTGAAATTTTTTCAGGGTTCT TAAACTTCCTATGCTCCTTTTGCTGCTGCTTAATTATAATAATTAATTAAACTCTTGTTATTCAGAAATTGATTAGTGTT AGTAGTTTATCTCTAATCTCTACTACTCCAACTTCAACTTCAATTCTTGTAGTATGTTTATTGAATTATTGCTTGTTAAT TTATTTGTTTAATTTCTCCTTGCTCAATTATGGTGTTTGGAATTGGATTTGCATGATGATGGCAAACTCTGTTCAGAAAT GGAATAATTAATTATATTATTTTTTTCTTCATATCTTATGTCCGAGAGATAGAGGCAGAAAGTGCTGCTGCTAAGATTTA GAAGGAATTATTAATTATTAACTAGTAAAGGCGGTTTGTGAATCAACAGTGTTATTCTATTCATATGGCCCTGTGCTTCT ATCTAGACACTATTTTAAGAAGAAAATCAAGAAAAGAAGCATATGCAAATCAAGTTCTAATTAGGGATTGGATGTGCTTT ATTTAATTGGTAATCAAAGAATGTTGCGTGGATAAAGGAGGAAAATGATGTCCTTGAAGGGTGATGATGTGGTTAGTATA TATGATTCCAAAAGCAACCCTATTATTGTTTTAATACTCTTTCTAATCAAGCATGTAGTTGCATCCTGCAAATATGCTTC TTTGTTTGTTTTCTTTATCTTTTTTAGCTTCAATTTGAACAATGAGATGCTAGTTTCCTTATCATTATCTTATAGCCGTG GTCCTGTGGAATCTTAATCCTACTTTTTCAAGATAATCTCCTTTAATAGTAATACATAATCTAACTAGCTATATTAGTAT ATATTTTATATAATAATCCAACCGCAAGTGTTCTTGGAAATGTTCTTATGCTCTTTCCTTTTAAGGCAAGTAGATCTCTT TCTTATTTATTTAATTAAAAGTGTAAATATTCAATAACAAAGATGATGATGATGATAAAAGTCATGGAGGTTAGTGAGAG AGAGAGGATGAGGGACATAGAGATGTGTCTTCCACACTTTGAGTTATGGGTGTGTTTTGTTTTAGGCCACTTTCCTTTTT GTTTAATTTAATTTTTTGGGTCCACTCAATGGGTTTGGTTATGGTTTCTGGTGATTGATGAAGTCACTAATCTTGTTTTG GTAGGAGGAGGTATGGGGCCCATTGGTGCTCCTAACTACTCAGGCATGGGCTGTCCTTGGCCCTTAATTGCCCCTTGAAA TGAGGGATTTTTCTGTGCAGGTGATGAGGATTTGGTCCTTAAAAACAGGGATATTTTGTGAAATAATGGTCTCAATTCCC CACTTAATGCAATAGTAATCCACTATAGAAATTTGGTCATTTTCCCCAACTTCTTTGATTCCATGTTCATTGTACAACAG GACATGTGTTTGAAATTTGAATGATCTCTTTATTAATTTCTACTCCTTCCGGTCCTATTTATAAGCAACAAAAAAAAAAT TCACATAGTTTAAGAAATGTAGTTAAAGTAGATAAAATGCATTAAATTTGTCTTAAATCAAAATAAACTTCCAAAATTAC CCTTTGCTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAAACACATTTTACAAGTTAGAATTAATAAGGG CATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGATCAAGGTTTTTCTTCTCTTT CATGCTTATAAATATGACCGGAGGGAGTATTTACTTTATAAAAAAGTGTTGCTTGGAGAATGCTTCTGTTATATGTTGAC AGTGGACCCTTGAATTTTGACTCAGTTTTCCTCATAAGGTGCATCAACATGAACCTAGTTAGTGGGTTTCCTTAACTTCG TAACTAATTATAT
CDS sequence (LotjaGi2g1v0259400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTATTAACAACCGCCACAAACAACATCACTAGCACTGCGAAATCGCCAGAACCCGAAACAGAAACACCGACCCG GATCCAACAACCCGGAAACGTAAACGCAACCGCAAAGCCGTTATCATTCTCCAACGGCGTTCTCAAGCGCCACCACCCTC CGGCGCCACATGCAAACCACTCTCCGGTGACGGTGACCTACAAGGAATGCTTGAAGAATCACGTCGCCAGCTTGGGTGGC CACGCGCTTGACGGCTGCGGCGAGTTCATGCCATCCCCCACCGCCACCGCCGATGACCCGAGCTCAATCAAGTGCGCCGC CTGCGGCTGCCACCGCAACTTCCACCGCCGGGAACCCGAAGAGCCGCCGATTACCGCCGCGCATCATGTTTTCGAGTACC AGCCGCACCACCGCCACCACCCTCCACCTCCGGTTCCGTTCAACCGGAGCCCCAATTCGGCGTCTCCGCCGCCGATCTCG TCCTACCCATCCGCCCCGCACATGCTACTTGCCTTATCCGGGGCGGGGCTCCCCGTCCCGCCGGAGAACACCGCCGCGCC GACGCAGACCCCTGGCTCCGATTCCCGGAAGCGGTTCAGGACGAAATTCACGCCGGGGCAGAAGGAGAAGATGCTGGAGT TTGCGGAGAGGGTTGGGTGGAAGATGCAGAAGAGGGATGAAGATTTGGTCATGGAGTTCTGCAATGAGGTCGGTGTTGAC AGAGGGGTTCTCAAGGTCTGGATGCACAACAACAAGAACACGTTCGGGAAACGGGATCATGCTGCTGCTAACGGCGGCGC TGGCGGCGGAGATGACGACGGAGCTGGTGGTGGTGAACGCGCAATCAACGGTAACGGTAACGGCAGTGCTGCTTCACAGG ATCCGAATCAGTATGAGAATGATAGCGGGACTAACGGTGCTACTAATGGGTCTTCTTCTTCTTCTTAA
Protein sequence (LotjaGi2g1v0259400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVLTTATNNITSTAKSPEPETETPTRIQQPGNVNATAKPLSFSNGVLKRHHPPAPHANHSPVTVTYKECLKNHVASLGG HALDGCGEFMPSPTATADDPSSIKCAACGCHRNFHRREPEEPPITAAHHVFEYQPHHRHHPPPPVPFNRSPNSASPPPIS SYPSAPHMLLALSGAGLPVPPENTAAPTQTPGSDSRKRFRTKFTPGQKEKMLEFAERVGWKMQKRDEDLVMEFCNEVGVD RGVLKVWMHNNKNTFGKRDHAAANGGAGGGDDDGAGGGERAINGNGNGSAASQDPNQYENDSGTNGATNGSSSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 5 | 277 | 273 | 3.9E-111 | – | |
| PANTHER | 5 | 277 | 273 | 3.9E-111 | – | |
| Pfam | 65 | 119 | 55 | 1.2E-27 | ||
| TIGRFAM | 66 | 118 | 53 | 4.5E-30 | ||
| ProSiteProfiles | 67 | 118 | 52 | 26.54 | ||
| MobiDBLite | 135 | 204 | 70 | - | – | |
| MobiDBLite | 140 | 163 | 24 | - | – | |
| Gene3D | 183 | 256 | 74 | 1.7E-31 | – | |
| SUPERFAMILY | 187 | 257 | 71 | 4.78E-19 | ||
| TIGRFAM | 196 | 253 | 58 | 1.5E-26 | ||
| MobiDBLite | 255 | 315 | 61 | - | – | |
| MobiDBLite | 285 | 315 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0259400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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