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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0259600 |
Transcript ID | LotjaGi2g1v0259600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Gibberellin-regulated family protein; TAIR: AT5G15230.1 GAST1 protein homolog 4; Swiss-Prot: sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4; TrEMBL-Plants: tr|C6SV89|C6SV89_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0259600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72752798..72755010) extracted from Lotus japonicus Gifu genome v1.2.
CTGACACATGTGTCATATGCTTGTTCTTGGTACCAAAGAAAACTCTACTCTACTCTCTGCATGCTTTCAGCAATAAATCA CGCTGATAAAAGTGGTGGTTTTCTTACCCCATCAACATTCTATAAATGCCTCCACTTTCTCTTTATGTCTCATTCAATCA TCACTCCCCTTATCTGCTCTCTTTAATTCCCTTGTGGGTTGTTGTTCACTTTGGTGCTACATAACACAAGTTCTGCTAAA CAGTGTAGAGTGGTGCCTGCAGCTTGAAACAATGGCCATGCCTAAATTACTTGTTGTCTTGATCTTGGCCCTCATTGCCA TTTCCATGCTTCAAACAATGGTTGGTCTTTTAAGTGAAAGTATAATTTTATACACACATACACACACAAAGCGCACATTT TTGAATCTGTTCTGAATTTGTGATGAGGTTTTGAAAGGTCAATCTCATATTTTTCTGGCTTGGTTTTTGCAGGTCATGGC ATCTCATGGGCATGGAGGCCATTACTACACTGACAAGGTATAGAACCACACCTCTCCTCACCTTTCCTCCCCTGTTTGGT TACCAGTTTCATTTTTCATTAAGTGCGTTTAAACTAATTTTCGTGAAGAAAAATTGTTTCATGAATCAGAATGTATTATT TTCACATTTTCATACTTTTCCATTGATAACAAAATTGGGATAAAAATATCAAAGAAATGGGGGGTTTTTTGTAATTTTTG TTTTTGAGGGATGCAAGGCTAAATTGCTGACTTTTCTGCTGCATTGTTTTGTGTTTCTCAGAAAAAATATGGACCTGGAA GTCTCAAGAGCTACCGTAAGTGAAGTTCCTGCATTCTTTTTGTTGTTCTTCTTGCCTTTTATTGTAATACAACTTGAGGA TCTCTCCACCTTTGAACATGAAAATAGCAAATGGTATCAACTAGCAGCACAAAGGAAAAAAAACAATTTTTAGAGACTAA CCCATTTAGAATATGAATTCTCTCCAACAAACTTGTCTCCATCACCTTCTGAGATCCGAGTCGTAAATTTTACATTTAGC GGCTTAAAATGACTCATAGTTCAAATTTCACCTGATGGTTAGAGTTTCGAGCCATTTTAGACCGTTAAATGTATAACCAA CGGGTGATATTTCAGATGGAAAAATGATGGAGTAGTATATATAGATGATTTTTTTTTTATACCAAAATCACTTATGAAAC TCATAAAGTACTGACAGAATTCCTAGATGTGGATGCTAGTGTTCACATTATGACCCTGGTTACTTGGTTGCATTGGATCC ATTTGCTTTAGATCTTAATAGAATTGTTTTTCAAGCAATTGATGATAAAATATGCTGGTTCTCACATGAACTAGTCCTTC TATACTTCATCTGTGGTCAAATTGGTTTCTTGTAAAAGCAGCATCTTTAGTCAGAGTGTTGGACTTTAATTGACTTTTCT TTTTTGGGATGTGTCAAATGACTAGAATGCCCATCACAATGCACGAGGAGGTGCAGCAGGACCCAGTACCACAAACCTTG CATGTTTTTCTGCCAAAAGTGCTGCAGGTCTTGCCTCTGTGTGCCCCCGGGTTATTATGGGAACAAAGCTGTGTGCCCTT GCTACAACAACTGGAAGACCAAGAGAGGAGGTCCCAAGTGCCCTTAAGCATGTTCTCCATCTAATTAAAAGAGACAGCTT TCTATATATATGATATAATCTCCTTGACTCCTTGTTCCCTTCTATGTCCTAACCAAAATACTTGTCTTTTGGCTCTATGT AATAAGGCTATGTTTGGATATCTATTATGGACATTAGCATACATTTCAAGCCAAAAAAATGAATGAAATTCTCATGTTAG ATTGAGATGAAAGTTGGGTGACAACATACTCAACTAGTATTCAAACTTGTATGTTACTTTGCTTGCCACTCAGGCTTTTT ATGGTTTAATTCAAATGAAGTGTGTCTAATACTATTGCTCTCATGCATGATGCTTTTTTAATTCTTTAGATTTTGTAAGA ATTGAACAATGGAAAGCATGACATTTCTGACAAATTATTATCATGTTTCTTTCCAATATTACTTTTACAAGAATGGTATC AGTGCATTCAAACTTGTAATTCCTTGCAATATATTGAAGTGGTGATTTATGAAAAAAAGTTACGATGGCCTAACAAAAAG CTTTTTTGACTCCATAATGTTGCCACTTTCTACTTAGCAAGTTCTGGTCCCAT
CDS sequence (LotjaGi2g1v0259600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGCCTAAATTACTTGTTGTCTTGATCTTGGCCCTCATTGCCATTTCCATGCTTCAAACAATGGTCATGGCATC TCATGGGCATGGAGGCCATTACTACACTGACAAGAAAAAATATGGACCTGGAAGTCTCAAGAGCTACCAATGCCCATCAC AATGCACGAGGAGGTGCAGCAGGACCCAGTACCACAAACCTTGCATGTTTTTCTGCCAAAAGTGCTGCAGGTCTTGCCTC TGTGTGCCCCCGGGTTATTATGGGAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGTCCCAA GTGCCCTTAA
Protein sequence (LotjaGi2g1v0259600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMPKLLVVLILALIAISMLQTMVMASHGHGGHYYTDKKKYGPGSLKSYQCPSQCTRRCSRTQYHKPCMFFCQKCCRSCL CVPPGYYGNKAVCPCYNNWKTKRGGPKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
SignalP_EUK | 1 | 26 | 26 | - | – | |
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
PANTHER | 2 | 109 | 108 | 7.4E-56 | – | |
PANTHER | 2 | 109 | 108 | 7.4E-56 | – | |
Phobius | 6 | 17 | 12 | - | – | |
TMHMM | 7 | 29 | 23 | - | – | |
Phobius | 18 | 26 | 9 | - | – | |
Phobius | 27 | 109 | 83 | - | – | |
Pfam | 50 | 109 | 60 | 7.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0259600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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