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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0261500 |
| Transcript ID | LotjaGi2g1v0261500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G29090.1 pectin methylesterase 31; Swiss-Prot: sp|Q9LVQ0|PME31_ARATH Pectinesterase 31; TrEMBL-Plants: tr|B9SVI9|B9SVI9_RICCO Pectinesterase; Found in the gene: LotjaGi2g1v0261500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73010633..73014437) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAACCCAATATCACAATCCCCTTAAATCAAATTCAACTAACTGATAAGATATGAGTCAATCCCAACAATATCTCCAT AATCAATAGTTGTGTGATTAATCACCCGATACTCCAATACTCTAATATCGAGTAAGTCTTCACTACAAATCAAATTTTAT GAAACATAATTTGGGACACATAAGATTTTGATTTAGCATAGCATATGTATGCGTGATTCATGCATTTGCATGTAAGATCA AGCACAAATAATAAGATTCCGTAAAAAACAAACCAAAAGATAAAATAACAGAGCACTGACCAAAGATTCTATATGCTATG CATGTCTTTTTTCTTTCTCTGCGTGTTGTGTCCGCAACCAAGGCTACTTAATACAGCAAAAACAACACACTGCACTCATT ATCATACATTCAGACCAGCAATAATCACACAAGAAAGCAACTGTTATTGAAAGTGCAAAGTTTTCAGGAAAGAAAATGGC AGCTTTAGTATTGACCGTGTCACAAGATGGAACCGGGCACTACAGAACAGTGCAGGAAGCCATTGATGCAGTGCCACTCG GCAACACTCGCCGGACGGTGATTCGGGTGTCCCCGGGAATCTACAGACAGCCACTGTACGTGGCCAAGACCAAGAAATTC ATCACCCTCGCTGGTGTGCGCCCTGAGGACACTGTTCTTACATGGAACAACACTGCCACCAGAATCGAGCACCACCAAGT AGGTGTTTTTTTTTTGGGTGTTCTCTTCGTTTGGGGAAATGGGCATGTACCAAAGATCACAATTGTTTTATTGTTTGGTG GTGATACTTGTGAGTTTTGTTGCAGGGTGCTCAGGTAATAGGGACTGGAACCTTTGGTTGTGGCAGCATCATTGTGGAAG GGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTGAGGTAATCATTTGTTGTGTTTTTGATGTGTTA GCTGGGTTCTCTGTCATTGTTTTGTTGGATGAAATTGACTTGGTAAGTGAACATTAGTGCATTTAGGTAGAGTGGTAGAC AAATTTAATTGTTGTGATGGGTCTATGACAAAAATAGTTGATCAAGTTAATTATTTGGAACCTTTCAAATTTCAATACTC TCTCCGTTCTAGAAAGTGTGTTGTTTTGCATCATTTTTCAATATCCCAAAATGTTTGTTGTTTTAGAAAACCAATGCATT TTTTGCTAATTTTTTTCCACTTATAATCTCATTTAATACATTTTCTCTCACTTATCACCTTTCATATTAACCAACCACAA CTCTTCTCTATTAATTACATTCTTCTCTATCTAAGTATATTTTAATAGTTGCACATCATACTAGTAAAATTAAATAAGGG CAGTCTAGTCAAATTATACTATCAATAATTGTTTTCTTACTCTTTGTGTCACAACCTTAAACTACAAACTTTCTGGAATG GAGGGAGTACTATTTTTGTTCATGAAAAGATAAAAAAAAACTTGAATGGTGCCCTTTGTAATTTGAAGCTTTGCATTTTC CTTTTTTATTGTGAGAAATAAAGAAAAGAGAGAAATGAAAAATATGAGGGGTGATGTGATGAGAAATAAGAAGAAAAAAG AGGTGAGATTGAGATGGAAGATAAGTGAATGTATCAAAGTTGGGGTTTGGGGGGTGTAAATTTAATAGACGTTATAGTTC TTTTCTGAATCCTCATACTAAATAGTGTCTAAATAAGCTTATTGAAGAAAGCCTTTTTAACTGGTGCACTAACCAAATTG TCATATACCTTTTTATTTATTTTCCTCCTTTTTCCTCAAAGGGTTCAGGGCAAGCAGTGGCAGTTAGGGTAACAGCAGAC AGATGTGCATTCTATAATTGCAGATTCCTTGGATGGCAGGTAGCCACAATCTCTTAATGTATAAGTTAGAGAGGCTAAAA ACAATATCTTATATTTTTTTTTTTCCGGTAAGCAATATCTTATATGGTGATGTATTATTAATTCCCATATTGACTAGAGA TACGGCAAATGAAATGAAGTACTTATAAATGAGAGGGTTAGAGTAAGGTTTAGCTTAAATTCTAATATGTCATCAGAGTT AATCCCAGTTCCTTTGAAATGTCAAATAGTGATTTTTGTGTTGGATGGTGTCTTTTAGTATAACTTCTTCAATGAGTATG ATGCAGGACACAGTGTATTTGCATTATGGCAAACAATATTTGAAAGACTGTTATATTGAAGGAAGTGTGGACTTCATTTT TGGTAATAGCACTGCACTCTTGGAGCACTGTCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAAT CTCCACAGGAAACAACCGGTTATGTATTTCTGAGGTGTGTGACTTTGTCTAGTGTTAATTAACAACCTCATCTTCGTACC TATCAGGCTATCACTGCATTTTATTCCATAAGTTCAACATGGAAAAAGCTAGTTTCTTAATTAGTAACATGTTTTCCATA CAACAATATATTGAGTGATTTCTGGTGTCATTGCAGATGTGTTATCACAGGTAACGGAGGAACTTCATATGCATATCTTG GACGACCATGGGGACCTTTTGGAAGAGTTGTCTTTGCATTTACTTACATGGATCAATGTATAAAGCATGTTGGTTGGAAT AATTGGGGAAAAATTGAGAATGAAAGAAGTGCTTGCTTCTATGAATACAGGTATATCATTCCCATTTTGCAGTTCTAGAT GTTGCTGATATAAGGCCCAAATCTTTTTCTCATTAAATCAATAACCAGTGAAAACATAGGATGAGTTAAGACAGTGAACT AAAACATATAAGAAGAAAAAATACTATGTTAACAAAAGGGATCCAGATTTTCAGTCTCCATATGATGTCTCAAATTCCTG TCTCACCAATGAAATATTTTCATGTCACTTAAAAAAGACATAAGTGGGGAAGTTGCAAACTTATATGGTGGTTTTCAATT GGCATTTCAAATTTGTTTTGGTGCAACAAAAAATGAGACACTGTTCGTGGACAGAAGATTTCAATCCTACCGGAAGATAC AAAGATAAATTTGATTTGATACAATAATGCAACATATGCTACCAATTACATGACATAAACATGCCAGGGTTGTTGCTTCT TCCAAGTGTATGTATGCTTGTCCCATTAGACATACAAAAGAGTTATTTGACATGTATATTTAATTGAAATAATTTAAACT TTTTCAATGCAAAATTGTTGTTTATTGAGTACAAAAGCTTAGAGTAATTTCATATAAAAAATACAGGTGCTTTGGACCGG GTTGCTGTCCATCCAAACGAGTAAAATGGGCTAGACAATTAATGGATAAAGAAGCAGAACAGTTTCTCATGCATGGCTTC ATTGACCCCGAACCAAAGAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTCTGCTTAGAAATTGTTGGA GACATTACCAGAAAGCATTGATACCATGACATATGAATTTGATGTGTAATAACACTATAATACAGCAACTTTTTTAAAAA TAAAATGATATTACATGAGTATTGGGCTATGAAATGATGTGTGTAATTAATATAAATCTACAAGTTGGCTGAACGGGAGA AGTTAAATATATTAATATGAGGATCATAATATTTATCACCAATATTCATTGAATTGCAGGGAAGCACTACATAATCAGCT ACAAATCGAAATAGCATTCTATTTAATATTTCTTATTACTTCTAGCATACATTGAATAGAAAACGTTGGAGATGAAACAT TTGCAGCCACAATATCTGTAGTGAAACTTTACCTGTAGTTGCTCC
CDS sequence (LotjaGi2g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTTTTAGTATAACTTCTTCAATGAGTATGATGCAGGACACAGTGTATTTGCATTATGGCAAACAATATTTGAA AGACTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCACTGTCATATCCACTGCA AGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAATCTCCACAGGAAACAACCGGTTATGTATTTCTGAGATGTGTTATC ACAGGTAACGGAGGAACTTCATATGCATATCTTGGACGACCATGGGGACCTTTTGGAAGAGTTGTCTTTGCATTTACTTA CATGGATCAATGTATAAAGCATGTTGGTTGGAATAATTGGGGAAAAATTGAGAATGAAAGAAGTGCTTGCTTCTATGAAT ACAGGTGCTTTGGACCGGGTTGCTGTCCATCCAAACGAGTAAAATGGGCTAGACAATTAATGGATAAAGAAGCAGAACAG TTTCTCATGCATGGCTTCATTGACCCCGAACCAAAGAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTC TGCTTAG
Protein sequence (LotjaGi2g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSFSITSSMSMMQDTVYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPQETTGYVFLRCVI TGNGGTSYAYLGRPWGPFGRVVFAFTYMDQCIKHVGWNNWGKIENERSACFYEYRCFGPGCCPSKRVKWARQLMDKEAEQ FLMHGFIDPEPKRPWLAQRMALRIPYSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 184 | 180 | 3.6E-57 | ||
| Pfam | 8 | 168 | 161 | 5.5E-40 | ||
| SUPERFAMILY | 11 | 173 | 163 | 6.28E-46 | ||
| PANTHER | 13 | 188 | 176 | 8.5E-114 | – | |
| PANTHER | 13 | 188 | 176 | 8.5E-114 | – | |
| ProSitePatterns | 31 | 40 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0261500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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