Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0262500.2

Overview

Field Value
Gene ID LotjaGi2g1v0262500
Transcript ID LotjaGi2g1v0262500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Hus1-like protein; TAIR: AT1G52530.1 Hus1-like protein; Swiss-Prot: sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog; TrEMBL-Plants: tr|I3SJI1|I3SJI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:73139752..73146284) extracted from Lotus japonicus Gifu genome v1.2.

CCAAATTGAAGAACTACCATCACCAAGGAAAACTCACTATGAATGTTATATTAATTAATTTTTGAAAACATGTGTAATAT AATTTTAGGTCCTAACTCGTGATTTCGCCACGAAACAGAGTGCGGGAGGGAAGATTGGGGTTTCGGAGGGAAAATTTTGA GTTTCCCTCCCTCGTTCTTCTCTTCCCTCTTCAATCCCCCATCCAATCACTACTATTCCATTTCCATTTGCTCTCACATC AACAATGAAGTTCAAGGCGTTTCTTACAGAAAACGGAGTGATCCTACTAGAACGTCGATTCATCCCCGCACTCGAAAAAA TGGGAAAAACCTGCCACCTCTACCTCACCAAAGACCACGCAATCTTCCTCCACAACCTCCTCAACGGCGACGGAATCCAA TCCATCGCACAATTCCGCAAAGAAGCCCTCTTCGACGACTACCGCATCTCCAGTCAAAACGACGACCGCATCGCCTTCTC CATCGACCTCTCCCTCCTCCTCCGCGCCCTCCGCAGCAGCGTCGCCGTCTCGTCACAATACTCCGCCGCCTCCGCTGCTA ACCCTAACCGTCTTCAGATCAAGCTTGTTAAGAAGCTTCCGCCTAATTCGACTAATCCCACGCCGTTCCTCACGTTTGAG ACAAGTGGATTTAAATCTGCTGTGATTCAGGATATTCCGATCTCGAAGCCGTTGTCTAGAGCTCAGGTTGTTGAGCTTCA GAATGCTCTTGATTTGGCTCAGGATCTTCCTCAGACACTGCTTCAGGTATATTAGGGTGTGTTGTTCTTGTGAAAAGGTT AATTGATTATTCGTTCTTTCGAAGTAGGTTCTAATCGTTTATGCTATAAGATAAACTCATATATAAGTTCTTGCAAACGC AACGTTACTACTATCTACCGATTTCCTTTGTTGCGCTTAGTTCGTTCGATAATCGACTAGTTCTCTAAGCAAACAAGTAG TTATTATTTAATTAGTTTGTTTATTGAGTCGACGAACACAGTTTTGGGTTCGGCGAAGAGAGGTAGAGGGAGACCAAAAA AAACTTGGGAAGATATTGTCAAGGATGATTTCATATCCCTCATAATTTAGTTTTTTATCGAGCTCAGTGGCGTAGAGTGA TCCATATAGCTGACTTCACTTAGTTGGATAAGACTTTTGTTGTTGTTGTTTGCTGGGTTGGCGTTTAGTTACTAGTCTGT TCAGGTCGTATGGTTAGTTTTTAACCGCAGCTCGTCAAGCAGGCTATGTTTGGATACTCGTTGGTCTCACTGCAAACAGA TGTTAGCATGTCTTAAAGGGAAAAGGTGAGCGTAACTCTTTTTACATATTGAGATGAAAGTTCGTTTACCTTGCGCTCAA TTGTTAACAAAACATACACGTAGTTGTTAGTTAGTTTGTTTGCTGGGCCTGCATTTAGTTACTAGTTTGTTCATGTTGTT CTGGTTAGTTAGTCACAGCACGTCAGTCAGTTGTTTGTGACTTAATTTCAGTTATTCTTGCTCTTTGTTTGTTCATTGAG TTCTCACTTGGAATGCAGGTGCCTGATTTGATTCAGATGCTTAATTTTGTGGACCGGATGAAGCATGTGGGAGATGTGGT GAATGTGTTCATAAGCAAGTATGGGGATTTGAGGGTGCAGGTTTCGACCACGTTGATCAGCCTCGGTGCCGAGTTTCGAA ACCTGTTGGTGATCGGAGAGCAGGCCAATGCTCCTGCTGAGGATCAAAACCTCACCGCTCAGACGCGCTCAGCGAGGTCA ATTCTGAGAGGAGATGCTCAGTCTGTGCAGGTGAGTGTGAAGCATTTCGCCAAGAGTCTGCAGTGTCACCTGGCCAAGCC GGATTGCGCTTTCTATGGGGTTGCTCCTCAGGGAAGTTGTTTGACGGTGATATTCCAGTTCTTTGTCCCTGGTACTCGCC ACACTGATAAGTCAATCAGCTTACATTGCAGGCTTCCTGTCCTTGACCCTGGTACTGGTTAAACTCCCTACACCCTCATG GTTGTGTGTAAATCCTTTCTTGTTAAGCTTAGAAATTCTGTTGGCAAAATAGTAAGAGTAACTGATGTGCCAAGCTCTTA ACTAGATATCAAGTTGATTTTTTGTATTCAATGCCAAGTTTACATTATGTGTATGATAGTTATATGGTTAGAGTAACATG AAGGATATAGGACTGAGAAGTTGTTTTAGCAGTATTGTTCACTTCTAGCAGTGTCATCTGGTTAACAGGCAAATAATAAC TTGGCAACATTCCTATCATTCACAAAAAGTACAAACTAGAGTCAGAGGGACCAAAAGTATGGTTCCTTACCAAGGTGAAC ATGATAGAAACTAGAGAAAGTTGTTCTGTGATCATTCTCAATCTCATTGAGTGAAAAGTGAGTCAATATCCTTTTGTAAG TTCAACCAGTTCCCTTATACATTTCATGGTGCTTCAACTAATTTAATCCAGAGTAGTTTCAACTGTCAACTAAGAAATAC TCCCTCCGTCCTGCATTTTAAGACCCCTTATTATAATGGGGGGTAGAGGAAGTAACTATTTTAACAATCATTAACTAACT AAATTGTTGTTTTGTGATGCTCCCTCTCTAGCCAGGAGATAATTGAGTATCCCTAACTGGGGCATAAATATTCGGGAGTG GTCTAGTTAGTGGATCAACTAGTTGATATGATTATATCATTATATGAATGACCAGGGACTAGCTTAGGAACTTAGATTGG ATATGCTTGTAGATGAAATGACTACCAATGTCCACATGTTTGAACCTCTCGTCAGATGATGTATTGCTAGCAAGGTGTAT CACGGATTTGTTTTTGCAAAAGACCATGGCTGAGGAAGATGGAATCTCAAATGATCTTAGGATTTGATTTTAAAACCATA ATTTATCACTGGGAAGAGCTATTAATGTCCGATATAGGTTCTGCTGAAGATTTTGAGACTGTCTTGTTTCTTTTCCTTCA AAGTAATCAGAAGCTTAATAAGACAAACTAAGCCTTTACTTTGTCAAATTAGATTGGATTGAAATTTCTCATTAGAGCCT TAAGCCACTTATATCAAAAATATTACTAGACCCAAAAGAGAATAACAAAATCCACCCTCAAATTCGCATCAGATTACAAG TCACGTTCACTCTAATGAAGAAAACATATTACATTCTAAGTTTAAGTCCGTCTAATATGGCTGGTAATTGTATTCAAAAA TAAATGTGACGCCCATTTAAAACGTAAGTCCTGTCTAATATGGCTTTTATAAGACAATGCCAAGCTTGGACATGTTTGTA TTGTTATTATTGTTGTATCATATACGAGGGTGGAGCTAAAATTTGTGAGGCAGACAGGCTATATTGGTTTTCTCGATAAA TAATTTACAACTCCGTTTTTTCATCAATTATTGGCATAAATTAGTAATATACAACACATGTCATATGTGTTCTTTTGGTT GGTAAGAACATGACACTTCTCATAATTTTATATTCGATTCTCGCTATCCTGCAAGTACCTTCTATAAGCGACCTATAATC TCAGATGCATACACTAATCTGTATTCTATTCTCGCTGTCCTGCAAATACCTTCTATAAGCGACCTAAAGTCTCAGATGTA TACTCTAATCTGTGGTCCTGACCGGAGCCGAACCCACCCAAACCATCCTAAGATTATTGATGTGATGCTCGAAAATCTGG TGACAATTGCAGGTAAGCTCTTTTTTATTAATTACACACCCCACCCCAACCTCATCTTTTTATTTTTCAATTTAAAACAT GTATAAATAGCCAAAAATGAGTTTGAAAAAGCAACCCCTTTTTCGTTGACATCAATTTTGGACCCAGAAACAGTGGAAAG TAAAATACAGTGATGCTACATGCACATGGACAAGGCCCTACCTACTAGTTGAAAAGCATAGATTACTACATTCCCGCAGT TTCCGCATTTGAATTCTCCAATAAATTAAACTAAACAGGTTGGTGACATAATTTCTTATCAAACAGCAATACATTTTGAA AATCAAACACCAAGCACTACCTAACTTGAAACATCACCCTTTGACCTATTTGAAGTCAACAACATCCAATATCACCACCA TCCAAACAACAATTACCTTCAGCAAAATAAAAGAAGGAGAAAAAAAATGTGAAACACAACATGAACATCACCCATTTGGG ATTATTTCAGGATGTGAATTGTGGTCTGAATATCATGGAATAACACTGCCAATTACCGTGAATAAATGAATGCATCCCAT GCTGCTCCAATGGCAAAAACAACAGGCATGAGAAGAATGGCCCCTCTAGAGGAAAGGCTTGGTGCCCCAGCTTTTTCAGG GGCAGCTTTGGGTGGAGGTGGTAGCTTTTCAACACGAACGGCTAACTTCATGCCGCCATAGCAGAACCCATTGCCGCTGA TAAAGTAGTAATGACGGGTCACATTCAAAGGAACCACATCTCTTCCAGCTCCTGTGGTCCAATTGTGGATTGGATGCTCA GCAATGCAATTTTCATAATTCGTCTTGTTCACTTCTAGCACATTCATCTGGTTCCTATCATACACAAAAACTGGTAAACT AACCACAGTTAGTATCAGGTTAAGCAGAAATTAATGACTTGGCAACATTCCATCATTAGGTTGGAACTAGAAATTAAGAG AGACACAAGTTTGTTCATTGCAGTTGCAAACAACTGTTAGTGTGCTTCCATTAGATATATTATAAAAAACCAAGACCCTT ATGAAGCTATAACTGGTATTTTGCTTTTCGTTTGCAAATTAAGCCATAAATTGAGGAGGAAAGTTCTTAATATTCTACTT TTTATTTTTCCTGAAATATGGATGTGACACTCCGTTTAACACTTTTTTGTGTGTTTAAACCACAACTATCCTCAATAGAG ACAATCGTATTCGAGCCGCATATGACATCTATGGATGGCAAAGCTCTTTCTAGCAAGTATTTAATGCAGCTGAATTAAGC CATAAATTGAGGAGGAAAGTTCTTATTATTCTACTTTTTTTTTTGCTGAGATATGGATGTGACCCTCCGTTCAACACTTT TGTGTGTGTTTAAACCACAACTATCCTCAATGGAGACAATCCTATTCGAGAGTCGAGACGCATATGACCTCTATGGGCGG CCAAACTCTTTCTACCAAGTATTTAATGCAGCTGCATTCACAGAGACTAGAACCCAAAAACTTTGCTTAAGTTCACTTTA ACTTGTTACCTAAGGGTCAATTAGTCAGTTAGAAACTTGAGCACTAATTCATGATATTCAGCAGCATAACAAAGCATACT AAAATACCTAAAATTGTTTACAAGTTGAAAAATATCTGCAACTTCCTATATATGCTTCACATTGCAAATGCTTGATTGAT AGAATATGCCTGACTTTTGTGTCCCATTGATTGTGCCATGTTTTCTGACCTTATCTACAGTATTATTGGTAACAAAGACC CAGAACTTAGATCACTAGGGAAAGAAAGTGCAAGAAGAAAAGTAGTGACAAACACAAATTAAGTTACAGACTTATTACAG TCATAAATTTATTAATTAAAACAAGCTCAACAAAGAGAAAATAAGGGCTTTTTGGTTTTACTGAAACATGATAGGCATGA ATAAGCACCAAAATATAGAAGCCATCAATAGAAGCAGCCAAAAGCTATGGATCTGAGAATGCAGAAAAACAAAATAACAG GATAAAAAAAAGGATCCAAACACACTGATTTTCTAATATACAGTCTCTCTTGACAGAAAACAGTAAATAAACAATGAAAA AAAATAGGGAGGGAGAAGAGAATTCCAGATGGCATTGCCCTCAAAATCTCAACTTTTTTCACTGTTAATTTCCAATTTTA ACAAAACTTAAATTCAGATGAACTGACAAACAGTAACACATCAAAATTCTTCAAATCTAGCACAACATGACAATTTTCTT CTCTTTTCTTTCCACAAATTAAGTACAGGCAGCATAGATTTAGACCCTCTTGGTTCACAAAACAACAAATTAAGTAGCAA AAACAAAAAAAATCTGAAAACTTTAGCATATATCATACTCAAACATGTTCAGATCCAATCCAGAACCCAGATAGAGGAAG CAGAAACAACAAATTATGAAAGCAAAGATTGAAACTTTAAGTCAAATCATCGAGAGAGAGAGAGAGAGAGAGAGAGCTTA CAGAGCCAGTCATCAATGTAGAAATGCTTGTCCCTGGCCCATACAGTGTAGTTAACATTGGGGTTCCAGAATTTGCCATC ACCGACCAGCCACCGTTTAGCTGAGACCTCTGGGACCATGAGAAGCACAGCAAAACCAAGGAAGAGAAGCACCATGGCTG GTGACCCCAGCATCTTCTTCTTCACCCTCTCCATGAATGAATGTTCTGTTCTGTTCTGGAGCTACCTTTGTTCAAAACTC TGGAACACTCTTGTCTGTTGTCTCTGTTCTAATATGTGCTGTTTTTTTTGCCTTTTAAGGAACATTTTGGGTTCTTTTGA GGTTTTTTAAATAATATATTATTTTCATTATTTTGAGAGTTGTCTGTCCAAGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0262500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGTTCAAGGCGTTTCTTACAGAAAACGGAGTGATCCTACTAGAACGTCGATTCATCCCCGCACTCGAAAAAATGGG AAAAACCTGCCACCTCTACCTCACCAAAGACCACGCAATCTTCCTCCACAACCTCCTCAACGGCGACGGAATCCAATCCA TCGCACAATTCCGCAAAGAAGCCCTCTTCGACGACTACCGCATCTCCAGTCAAAACGACGACCGCATCGCCTTCTCCATC GACCTCTCCCTCCTCCTCCGCGCCCTCCGCAGCAGCGTCGCCGTCTCGTCACAATACTCCGCCGCCTCCGCTGCTAACCC TAACCGTCTTCAGATCAAGCTTGTTAAGAAGCTTCCGCCTAATTCGACTAATCCCACGCCGTTCCTCACGTTTGAGACAA GTGGATTTAAATCTGCTGTGATTCAGGATATTCCGATCTCGAAGCCGTTGTCTAGAGCTCAGGTTGTTGAGCTTCAGAAT GCTCTTGATTTGGCTCAGGATCTTCCTCAGACACTGCTTCAGGTGCCTGATTTGATTCAGATGCTTAATTTTGTGGACCG GATGAAGCATGTGGGAGATGTGGTGAATGTGTTCATAAGCAAGTATGGGGATTTGAGGGTGCAGGTTTCGACCACGTTGA TCAGCCTCGGTGCCGAGTTTCGAAACCTGTTGGTGATCGGAGAGCAGGCCAATGCTCCTGCTGAGGATCAAAACCTCACC GCTCAGACGCGCTCAGCGAGGTCAATTCTGAGAGGAGATGCTCAGTCTGTGCAGGTGAGTGTGAAGCATTTCGCCAAGAG TCTGCAGTGTCACCTGGCCAAGCCGGATTGCGCTTTCTATGGGGTTGCTCCTCAGGGAAGTTGTTTGACGGTGATATTCC AGTTCTTTGTCCCTGGTACTCGCCACACTGATAAGTCAATCAGCTTACATTGCAGGCTTCCTGTCCTTGACCCTGGTACT GGTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0262500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKFKAFLTENGVILLERRFIPALEKMGKTCHLYLTKDHAIFLHNLLNGDGIQSIAQFRKEALFDDYRISSQNDDRIAFSI DLSLLLRALRSSVAVSSQYSAASAANPNRLQIKLVKKLPPNSTNPTPFLTFETSGFKSAVIQDIPISKPLSRAQVVELQN ALDLAQDLPQTLLQVPDLIQMLNFVDRMKHVGDVVNVFISKYGDLRVQVSTTLISLGAEFRNLLVIGEQANAPAEDQNLT AQTRSARSILRGDAQSVQVSVKHFAKSLQCHLAKPDCAFYGVAPQGSCLTVIFQFFVPGTRHTDKSISLHCRLPVLDPGT G
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12900
1 315 315 3.7E-86 –
Gene3D
G3DSA:3.70.10.10
1 315 315 4.1E-56 –
PANTHER
PTHR12900:SF0
1 315 315 3.7E-86 –
Pfam
PF04005
1 300 300 1.2E-68
IPR007150
PIRSF
PIRSF011312
1 301 301 7.6E-25
IPR016580

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000077
Biological process DNA damage checkpoint A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
Subterm of
GO:0005730
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of
Part of
GO:0030896
Cellular component Checkpoint clamp complex Conserved heterotrimeric complex of PCNA-like proteins that is loaded onto DNA at sites of DNA damage.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0262500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…