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GO:0005730

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description Nucleolus
Full defintion A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of

Relationships

The relationship of GO:0005730 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0198506732

, · pages

Associated Lotus transcripts 54

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0063949.1
– PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1|
GO terms
2
Lj0g3v0098889.1
– PREDICTED: ribosomal RNA-processing protein 8-like [Cicer arietinum] gi|502109246|ref|XP_004493600.1|
GO terms
2
Lj0g3v0120989.1
– PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1|
GO terms
2
Lj0g3v0181479.1
– PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max] gi|356549741|ref|XP_003543249.1|
GO terms
1
Lj0g3v0300999.1
– PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1|
GO terms
2
Lj0g3v0300999.2
– PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1|
GO terms
2
Lj1g3v0672680.1
– PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1|
GO terms
2
Lj1g3v1932550.1
– PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502154817|ref|XP_004509849.1|
GO terms
2
Lj1g3v3658810.1
– PREDICTED: ribosomal RNA-processing protein 8-like [Cicer arietinum] gi|502109246|ref|XP_004493600.1|
GO terms
2
Lj2g3v1068970.1
– F6D8.25 [Theobroma cacao] gi|508778644|gb|EOY25900.1|
GO terms
3
Lj2g3v1645560.1
– PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356538952|ref|XP_003537964.1|
GO terms
1
Lj2g3v3188360.1
– PREDICTED: pescadillo homolog [Glycine max] gi|356572972|ref|XP_003554639.1|
GO terms
2
Lj2g3v3188360.4
– PREDICTED: pescadillo homolog isoform X2 [Cicer arietinum] gi|502166463|ref|XP_004513900.1|
GO terms
2
Lj4g3v1748320.1
– PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 2-like protein-like [Glycine max] gi|356511577|ref|XP_003524501.1|
GO terms
2
Lj4g3v1893160.1
– PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max] gi|356544026|ref|XP_003540457.1|
GO terms
1
Lj5g3v0391500.1
– PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max] gi|356544026|ref|XP_003540457.1|
GO terms
1
Lj5g3v1681420.1
– PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cicer arietinum] gi|502117906|ref|XP_004496004.1|
GO terms
2
Lj6g3v2192080.1
– PREDICTED: DNA polymerase V-like isoform 1 [Glycine max] gi|356549489|ref|XP_003543126.1|
GO terms
4
LotjaGi1g1v0026600.1
– Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0026600
GO terms
2
LotjaGi1g1v0200100.1
– Ribosomal protein l7ae; TAIR: AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3SXG0|I3SXG0_MEDTR Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Found in the gene: LotjaGi1g1v0200100
GO terms
2
LotjaGi1g1v0390500.1
– Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0390500
GO terms
2
LotjaGi1g1v0611800.1
– Ribosomal RNA-processing protein 8; TAIR: AT5G40530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8; TrEMBL-Plants: tr|I3T493|I3T493_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0611800
GO terms
2
LotjaGi1g1v0611800.2
– Ribosomal RNA-processing protein 8; TAIR: AT5G40530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8; TrEMBL-Plants: tr|I3T493|I3T493_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0611800
GO terms
2
LotjaGi1g1v0611800.3
– Ribosomal RNA-processing protein 8; TAIR: AT5G40530.4 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8; TrEMBL-Plants: tr|I3T493|I3T493_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0611800
GO terms
2
LotjaGi2g1v0126600.1
– RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600
GO terms
2
LotjaGi2g1v0126600.2
– RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600
GO terms
2
LotjaGi2g1v0126600.3
– RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600
GO terms
2
LotjaGi2g1v0126600.4
– RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0126600
GO terms
2
LotjaGi2g1v0193200.1
– RNA 3-terminal phosphate cyclase-like protein, putative; TAIR: AT5G22100.1 RNA cyclase family protein; Swiss-Prot: sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein; TrEMBL-Plants: tr|A0A151S8V9|A0A151S8V9_CAJCA Putative RNA 3'-terminal phosphate cyclase-like protein; Found in the gene: LotjaGi2g1v0193200
GO terms
2
LotjaGi2g1v0262500.1
– Hus1-like protein; TAIR: AT1G52530.1 Hus1-like protein; Swiss-Prot: sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog; TrEMBL-Plants: tr|I3SJI1|I3SJI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262500
GO terms
3
LotjaGi2g1v0262500.2
– Hus1-like protein; TAIR: AT1G52530.1 Hus1-like protein; Swiss-Prot: sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog; TrEMBL-Plants: tr|I3SJI1|I3SJI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262500
GO terms
3
LotjaGi2g1v0262500.3
– Hus1-like protein; TAIR: AT1G52530.1 Hus1-like protein; Swiss-Prot: sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog; TrEMBL-Plants: tr|I3SJI1|I3SJI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262500
GO terms
3
LotjaGi2g1v0356500.1
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi2g1v0356500
GO terms
1
LotjaGi2g1v0356500.2
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi2g1v0356500
GO terms
1
LotjaGi2g1v0356500.3
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi2g1v0356500
GO terms
1
LotjaGi3g1v0004900.1
– Chaperone protein TorD; TAIR: AT2G01640.1 ribosome biogenesis protein; Swiss-Prot: sp|A9MJV6|TORD_SALAR Chaperone protein TorD; TrEMBL-Plants: tr|I3SP06|I3SP06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0004900
GO terms
4
LotjaGi3g1v0330800_LC.1
– GTP-binding family protein; TAIR: AT1G52980.1 GTP-binding family protein; Swiss-Prot: sp|Q9C923|NUG2_ARATH Nuclear/nucleolar GTPase 2; TrEMBL-Plants: tr|A0A151RE97|A0A151RE97_CAJCA Nucleolar GTP-binding protein 2; Found in the gene: LotjaGi3g1v0330800_LC
GO terms
1
LotjaGi3g1v0330900_LC.1
– GTP-binding family protein; TAIR: AT1G52980.1 GTP-binding family protein; Swiss-Prot: sp|A2XGQ1|NUG2_ORYSI Nuclear/nucleolar GTPase 2; TrEMBL-Plants: tr|A0A072V9N1|A0A072V9N1_MEDTR Nucleolar GTP-binding-like protein; Found in the gene: LotjaGi3g1v0330900_LC
GO terms
1
LotjaGi3g1v0526700.1
– Anamorsin homolog; TAIR: AT5G18400.2 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesi; Swiss-Prot: sp|B7FNA9|DRE2_MEDTR Anamorsin homolog; TrEMBL-Plants: tr|I3S951|I3S951_LOTJA Anamorsin homolog; Found in the gene: LotjaGi3g1v0526700
GO terms
2
LotjaGi4g1v0218400.1
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi4g1v0218400
GO terms
1
LotjaGi4g1v0218400.2
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi4g1v0218400
GO terms
1
LotjaGi4g1v0218400.3
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi4g1v0218400
GO terms
1
LotjaGi4g1v0218400.4
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi4g1v0218400
GO terms
1
LotjaGi4g1v0259200.1
– H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200
GO terms
2
LotjaGi4g1v0259200.2
– H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200
GO terms
2
LotjaGi4g1v0306900.1
– Nucleolar and coiled-body phosphoprotein 1; TAIR: AT5G57120.1 nucleolar/coiled-body phosphoprotein; Swiss-Prot: sp|Q14978|NOLC1_HUMAN Nucleolar and coiled-body phosphoprotein 1; TrEMBL-Plants: tr|A0A151SCL3|A0A151SCL3_CAJCA Nucleolar phosphoprotein p130 family; Found in the gene: LotjaGi4g1v0306900
GO terms
1
LotjaGi4g1v0306900.2
– Nucleolar and coiled-body phosphoprotein 1; TAIR: AT5G57120.1 nucleolar/coiled-body phosphoprotein; Swiss-Prot: sp|Q14978|NOLC1_HUMAN Nucleolar and coiled-body phosphoprotein 1; TrEMBL-Plants: tr|A0A151SCL3|A0A151SCL3_CAJCA Nucleolar phosphoprotein p130 family; Found in the gene: LotjaGi4g1v0306900
GO terms
1
LotjaGi5g1v0041600.1
– Nucleolar GTP-binding protein 2; TAIR: AT1G52980.1 GTP-binding family protein; Swiss-Prot: sp|A2XGQ1|NUG2_ORYSI Nuclear/nucleolar GTPase 2; TrEMBL-Plants: tr|I1M3A3|I1M3A3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0041600
GO terms
1
LotjaGi5g1v0261100.1
– Transducin/WD-like repeat-protein; TAIR: AT2G47990.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O82266|SWA1_ARATH Protein SLOW WALKER 1; TrEMBL-Plants: tr|A0A151TWT8|A0A151TWT8_CAJCA U3 small nucleolar RNA-associated protein 15 isogeny; Found in the gene: LotjaGi5g1v0261100
GO terms
2
LotjaGi5g1v0274500.1
– Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|I1LJW2|I1LJW2_SOYBN Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi5g1v0274500
GO terms
1
LotjaGi5g1v0328000.1
– Chaperone protein TorD; TAIR: AT2G01640.1 ribosome biogenesis protein; Swiss-Prot: sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic; TrEMBL-Plants: tr|I3SP06|I3SP06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0328000
GO terms
4
LotjaGi6g1v0162200.1
– Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200
GO terms
2
LotjaGi6g1v0162200.2
– Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200
GO terms
2
LotjaGi6g1v0347500.1
– DNA polymerase V; TAIR: AT5G64420.1 DNA polymerase V family; Swiss-Prot: sp|Q7TPV4|MBB1A_MOUSE Myb-binding protein 1A; TrEMBL-Plants: tr|I1M2K6|I1M2K6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0347500
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0008134
Molecular function Transcription factor binding 1 1.85